Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 16:87458364-87708632

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37 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Usp16 16 87454708 to 87483515 28807 + protein coding gene ubiquitin specific peptidase 16
Cct8 16 87483325 to 87495869 12544 - protein coding gene chaperonin containing Tcp1, subunit 8 (theta)
Tssr141938 16 87490546 to 87490576 30 - TSS region transcription start site region 141938
Tssr141939 16 87491343 to 87491365 22 - TSS region transcription start site region 141939
Cpgi8399 16 87495225 to 87496340 1115 CpG island CpG island 8399
Tssr141940 16 87495807 to 87495820 13 - TSS region transcription start site region 141940
Tssr141941 16 87495823 to 87495877 54 - TSS region transcription start site region 141941
Tssr139221 16 87495983 to 87496062 79 + TSS region transcription start site region 139221
B130034C11Rik 16 87496073 to 87504038 7965 + lncRNA gene RIKEN cDNA B130034C11 gene
Gm24891 16 87528030 to 87528165 135 - snoRNA gene predicted gene, 24891
Rpl31-ps4 16 87549062 to 87549451 389 - pseudogene ribosomal protein L31, pseudogene 4
Tssr139222 16 87553313 to 87553342 29 + TSS region transcription start site region 139222
Map3k7cl 16 87553330 to 87595336 42006 + protein coding gene Map3k7 C-terminal like
Tssr139223 16 87553402 to 87553413 11 + TSS region transcription start site region 139223
Tssr139224 16 87553415 to 87553472 57 + TSS region transcription start site region 139224
Tssr139225 16 87553517 to 87553530 13 + TSS region transcription start site region 139225
Tssr141942 16 87554234 to 87554246 12 - TSS region transcription start site region 141942
Renf2 16 87583364 to 87583632 268 QTL renal failure 2
D16Mit153 16 87583364 to 87583632 268 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 153
Gm41485 16 87602429 to 87616283 13854 - lncRNA gene predicted gene, 41485
Tssr141943 16 87612339 to 87612350 11 - TSS region transcription start site region 141943
Tssr141944 16 87612559 to 87612564 5 - TSS region transcription start site region 141944
Gm22808 16 87621014 to 87621120 106 - snRNA gene predicted gene, 22808
Tssr141945 16 87634947 to 87634952 5 - TSS region transcription start site region 141945
Tssr141946 16 87654291 to 87654298 7 - TSS region transcription start site region 141946
Tssr139226 16 87661410 to 87661442 32 + TSS region transcription start site region 139226
D16Ium41 16 87665620 to 87665833 213 DNA segment DNA segment, Chr 16, Indiana University Medical 41
Tssr139227 16 87692462 to 87692463 1 + TSS region transcription start site region 139227
Cpgi8400 16 87698496 to 87699583 1087 CpG island CpG island 8400
Tssr139228 16 87698904 to 87698959 55 + TSS region transcription start site region 139228
Bach1 16 87698954 to 87733346 34392 + protein coding gene BTB and CNC homology 1, basic leucine zipper transcription factor 1
Tssr139229 16 87698961 to 87698984 23 + TSS region transcription start site region 139229
Tssr139230 16 87698992 to 87699034 42 + TSS region transcription start site region 139230
Tssr139231 16 87699054 to 87699058 4 + TSS region transcription start site region 139231
Tssr141947 16 87700056 to 87700066 10 - TSS region transcription start site region 141947
Tssr139232 16 87700155 to 87700168 13 + TSS region transcription start site region 139232
Tssr139233 16 87700200 to 87700213 13 + TSS region transcription start site region 139233