Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 16:87453330-87695336

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31 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Usp16 16 87454708 to 87483515 28807 + protein coding gene ubiquitin specific peptidase 16
Cpgi8398 16 87454750 to 87455689 939 CpG island CpG island 8398
Tssr139219 16 87454976 to 87454987 11 + TSS region transcription start site region 139219
Tssr139220 16 87454992 to 87455057 65 + TSS region transcription start site region 139220
Cct8 16 87483325 to 87495869 12544 - protein coding gene chaperonin containing Tcp1, subunit 8 (theta)
Tssr141938 16 87490546 to 87490576 30 - TSS region transcription start site region 141938
Tssr141939 16 87491343 to 87491365 22 - TSS region transcription start site region 141939
Cpgi8399 16 87495225 to 87496340 1115 CpG island CpG island 8399
Tssr141940 16 87495807 to 87495820 13 - TSS region transcription start site region 141940
Tssr141941 16 87495823 to 87495877 54 - TSS region transcription start site region 141941
Tssr139221 16 87495983 to 87496062 79 + TSS region transcription start site region 139221
B130034C11Rik 16 87496073 to 87504038 7965 + lncRNA gene RIKEN cDNA B130034C11 gene
Gm24891 16 87528030 to 87528165 135 - snoRNA gene predicted gene, 24891
Rpl31-ps4 16 87549062 to 87549451 389 - pseudogene ribosomal protein L31, pseudogene 4
Tssr139222 16 87553313 to 87553342 29 + TSS region transcription start site region 139222
Map3k7cl 16 87553330 to 87595336 42006 + protein coding gene Map3k7 C-terminal like
Tssr139223 16 87553402 to 87553413 11 + TSS region transcription start site region 139223
Tssr139224 16 87553415 to 87553472 57 + TSS region transcription start site region 139224
Tssr139225 16 87553517 to 87553530 13 + TSS region transcription start site region 139225
Tssr141942 16 87554234 to 87554246 12 - TSS region transcription start site region 141942
D16Mit153 16 87583364 to 87583632 268 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 153
Renf2 16 87583364 to 87583632 268 QTL renal failure 2
Gm41485 16 87602429 to 87616283 13854 - lncRNA gene predicted gene, 41485
Tssr141943 16 87612339 to 87612350 11 - TSS region transcription start site region 141943
Tssr141944 16 87612559 to 87612564 5 - TSS region transcription start site region 141944
Gm22808 16 87621014 to 87621120 106 - snRNA gene predicted gene, 22808
Tssr141945 16 87634947 to 87634952 5 - TSS region transcription start site region 141945
Tssr141946 16 87654291 to 87654298 7 - TSS region transcription start site region 141946
Tssr139226 16 87661410 to 87661442 32 + TSS region transcription start site region 139226
D16Ium41 16 87665620 to 87665833 213 DNA segment DNA segment, Chr 16, Indiana University Medical 41
Tssr139227 16 87692462 to 87692463 1 + TSS region transcription start site region 139227