Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 16:87283756-88363761

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87 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
D16Mit69 16 87285438 to 87285514 76 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 69
Tssr139216 16 87304050 to 87304058 8 + TSS region transcription start site region 139216
Cpgi8394 16 87354037 to 87354595 558 CpG island CpG island 8394
Tssr141932 16 87354176 to 87354184 8 - TSS region transcription start site region 141932
N6amt1 16 87354185 to 87368649 14464 + protein coding gene N-6 adenine-specific DNA methyltransferase 1 (putative)
Tssr139217 16 87354204 to 87354249 45 + TSS region transcription start site region 139217
Ltn1 16 87376651 to 87432612 55961 - protein coding gene listerin E3 ubiquitin protein ligase 1
Gm25896 16 87418909 to 87419044 135 - snoRNA gene predicted gene, 25896
Cpgi8395 16 87431953 to 87432785 832 CpG island CpG island 8395
Tssr141933 16 87432484 to 87432548 64 - TSS region transcription start site region 141933
Tssr141934 16 87432597 to 87432613 16 - TSS region transcription start site region 141934
Rwdd2b 16 87433407 to 87440573 7166 - protein coding gene RWD domain containing 2B
Cpgi8396 16 87437106 to 87437368 262 CpG island CpG island 8396
Cpgi8397 16 87440136 to 87440761 625 CpG island CpG island 8397
Tssr141935 16 87440498 to 87440542 44 - TSS region transcription start site region 141935
Tssr141936 16 87440551 to 87440612 61 - TSS region transcription start site region 141936
Tssr139218 16 87440602 to 87440637 35 + TSS region transcription start site region 139218
Tssr141937 16 87443216 to 87443220 4 - TSS region transcription start site region 141937
Usp16 16 87454708 to 87483515 28807 + protein coding gene ubiquitin specific peptidase 16
Cpgi8398 16 87454750 to 87455689 939 CpG island CpG island 8398
Tssr139219 16 87454976 to 87454987 11 + TSS region transcription start site region 139219
Tssr139220 16 87454992 to 87455057 65 + TSS region transcription start site region 139220
Cct8 16 87483325 to 87495869 12544 - protein coding gene chaperonin containing Tcp1, subunit 8 (theta)
Tssr141938 16 87490546 to 87490576 30 - TSS region transcription start site region 141938
Tssr141939 16 87491343 to 87491365 22 - TSS region transcription start site region 141939
Cpgi8399 16 87495225 to 87496340 1115 CpG island CpG island 8399
Tssr141940 16 87495807 to 87495820 13 - TSS region transcription start site region 141940
Tssr141941 16 87495823 to 87495877 54 - TSS region transcription start site region 141941
Tssr139221 16 87495983 to 87496062 79 + TSS region transcription start site region 139221
B130034C11Rik 16 87496073 to 87504038 7965 + lncRNA gene RIKEN cDNA B130034C11 gene
Gm24891 16 87528030 to 87528165 135 - snoRNA gene predicted gene, 24891
Rpl31-ps4 16 87549062 to 87549451 389 - pseudogene ribosomal protein L31, pseudogene 4
Tssr139222 16 87553313 to 87553342 29 + TSS region transcription start site region 139222
Map3k7cl 16 87553330 to 87595336 42006 + protein coding gene Map3k7 C-terminal like
Tssr139223 16 87553402 to 87553413 11 + TSS region transcription start site region 139223
Tssr139224 16 87553415 to 87553472 57 + TSS region transcription start site region 139224
Tssr139225 16 87553517 to 87553530 13 + TSS region transcription start site region 139225
Tssr141942 16 87554234 to 87554246 12 - TSS region transcription start site region 141942
Renf2 16 87583364 to 87583632 268 QTL renal failure 2
D16Mit153 16 87583364 to 87583632 268 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 153
Gm41485 16 87602429 to 87616283 13854 - lncRNA gene predicted gene, 41485
Tssr141943 16 87612339 to 87612350 11 - TSS region transcription start site region 141943
Tssr141944 16 87612559 to 87612564 5 - TSS region transcription start site region 141944
Gm22808 16 87621014 to 87621120 106 - snRNA gene predicted gene, 22808
Tssr141945 16 87634947 to 87634952 5 - TSS region transcription start site region 141945
Tssr141946 16 87654291 to 87654298 7 - TSS region transcription start site region 141946
Tssr139226 16 87661410 to 87661442 32 + TSS region transcription start site region 139226
D16Ium41 16 87665620 to 87665833 213 DNA segment DNA segment, Chr 16, Indiana University Medical 41
Tssr139227 16 87692462 to 87692463 1 + TSS region transcription start site region 139227
Cpgi8400 16 87698496 to 87699583 1087 CpG island CpG island 8400
Tssr139228 16 87698904 to 87698959 55 + TSS region transcription start site region 139228
Bach1 16 87698954 to 87733346 34392 + protein coding gene BTB and CNC homology 1, basic leucine zipper transcription factor 1
Tssr139229 16 87698961 to 87698984 23 + TSS region transcription start site region 139229
Tssr139230 16 87698992 to 87699034 42 + TSS region transcription start site region 139230
Tssr139231 16 87699054 to 87699058 4 + TSS region transcription start site region 139231
Tssr141947 16 87700056 to 87700066 10 - TSS region transcription start site region 141947
Tssr139232 16 87700155 to 87700168 13 + TSS region transcription start site region 139232
Tssr139233 16 87700200 to 87700213 13 + TSS region transcription start site region 139233
Tssr139234 16 87719115 to 87719164 49 + TSS region transcription start site region 139234
Tssr139235 16 87720900 to 87720905 5 + TSS region transcription start site region 139235
Cpgi8401 16 87721229 to 87721413 184 CpG island CpG island 8401
Cpgi8402 16 87725898 to 87726206 308 CpG island CpG island 8402
Tssr139236 16 87729071 to 87729084 13 + TSS region transcription start site region 139236
Tssr139237 16 87729737 to 87729759 22 + TSS region transcription start site region 139237
Tssr139238 16 87731521 to 87731525 4 + TSS region transcription start site region 139238
Tssr139239 16 87732652 to 87732658 6 + TSS region transcription start site region 139239
Cpgi8403 16 87736060 to 87736288 228 CpG island CpG island 8403
Tssr141948 16 87736900 to 87736926 26 - TSS region transcription start site region 141948
Gm32925 16 87737943 to 87799641 61698 + lncRNA gene predicted gene, 32925
D16Mit191 16 87755787 to 87755907 120 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 191
Gm23994 16 87761556 to 87761643 87 - snoRNA gene predicted gene, 23994
Tssr139240 16 87787540 to 87787551 11 + TSS region transcription start site region 139240
Tssr139241 16 87823756 to 87823761 5 + TSS region transcription start site region 139241
2810407A14Rik 16 87823950 to 87872183 48233 + lincRNA gene RIKEN cDNA 2810407A14 gene
Grik1 16 87895900 to 88290265 394365 - protein coding gene glutamate receptor, ionotropic, kainate 1
Tssr141949 16 87902275 to 87902280 5 - TSS region transcription start site region 141949
4930590A17Rik 16 87933354 to 88012206 78852 + lncRNA gene RIKEN cDNA 4930590A17 gene
D16Ium72 16 87965542 to 87965723 181 DNA segment DNA segment, Chr 16, Indiana University Medical 72
Gm33207 16 88012366 to 88016443 4077 + lncRNA gene predicted gene, 33207
Gm46553 16 88134754 to 88142516 7762 - lncRNA gene predicted gene, 46553
Tssr141950 16 88167438 to 88167439 1 - TSS region transcription start site region 141950
Gm41486 16 88224657 to 88226200 1543 + lncRNA gene predicted gene, 41486
Tssr141951 16 88225432 to 88225446 14 - TSS region transcription start site region 141951
Tssr139242 16 88225518 to 88225544 26 + TSS region transcription start site region 139242
Cpgi8404 16 88289377 to 88290583 1206 CpG island CpG island 8404
Tssr141952 16 88290186 to 88290197 11 - TSS region transcription start site region 141952
Tssr141953 16 88290199 to 88290226 27 - TSS region transcription start site region 141953