Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 16:86688417-87568467

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54 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm49572 16 86758899 to 86759376 477 + pseudogene predicted gene, 49572
Gm32461 16 86770227 to 86806513 36286 - lincRNA gene predicted gene, 32461
Tssr141926 16 86805521 to 86805538 17 - TSS region transcription start site region 141926
Tssr141927 16 86806358 to 86806368 10 - TSS region transcription start site region 141927
Tssr141928 16 86806507 to 86806520 13 - TSS region transcription start site region 141928
Tssr141929 16 86808802 to 86808825 23 - TSS region transcription start site region 141929
Tssr139214 16 86816885 to 86816902 17 + TSS region transcription start site region 139214
Tssr139215 16 86816904 to 86816920 16 + TSS region transcription start site region 139215
Gm32624 16 86816914 to 86877360 60446 + lincRNA gene predicted gene, 32624
Gm25715 16 86845470 to 86845594 124 + snoRNA gene predicted gene, 25715
Gm38477 16 87000938 to 87049283 48345 - lincRNA gene predicted gene, 38477
Tssr141930 16 87049255 to 87049264 9 - TSS region transcription start site region 141930
Gm32865 16 87125036 to 87128439 3403 - lincRNA gene predicted gene, 32865
Tssr141931 16 87128417 to 87128467 50 - TSS region transcription start site region 141931
Gm41484 16 87240837 to 87246693 5856 - lncRNA gene predicted gene, 41484
Cpgi8393 16 87246289 to 87246597 308 CpG island CpG island 8393
D16Mit69 16 87285438 to 87285514 76 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 69
Tssr139216 16 87304050 to 87304058 8 + TSS region transcription start site region 139216
Cpgi8394 16 87354037 to 87354595 558 CpG island CpG island 8394
Tssr141932 16 87354176 to 87354184 8 - TSS region transcription start site region 141932
N6amt1 16 87354185 to 87368649 14464 + protein coding gene N-6 adenine-specific DNA methyltransferase 1 (putative)
Tssr139217 16 87354204 to 87354249 45 + TSS region transcription start site region 139217
Ltn1 16 87376651 to 87432612 55961 - protein coding gene listerin E3 ubiquitin protein ligase 1
Gm25896 16 87418909 to 87419044 135 - snoRNA gene predicted gene, 25896
Cpgi8395 16 87431953 to 87432785 832 CpG island CpG island 8395
Tssr141933 16 87432484 to 87432548 64 - TSS region transcription start site region 141933
Tssr141934 16 87432597 to 87432613 16 - TSS region transcription start site region 141934
Rwdd2b 16 87433407 to 87440573 7166 - protein coding gene RWD domain containing 2B
Cpgi8396 16 87437106 to 87437368 262 CpG island CpG island 8396
Cpgi8397 16 87440136 to 87440761 625 CpG island CpG island 8397
Tssr141935 16 87440498 to 87440542 44 - TSS region transcription start site region 141935
Tssr141936 16 87440551 to 87440612 61 - TSS region transcription start site region 141936
Tssr139218 16 87440602 to 87440637 35 + TSS region transcription start site region 139218
Tssr141937 16 87443216 to 87443220 4 - TSS region transcription start site region 141937
Usp16 16 87454708 to 87483515 28807 + protein coding gene ubiquitin specific peptidase 16
Cpgi8398 16 87454750 to 87455689 939 CpG island CpG island 8398
Tssr139219 16 87454976 to 87454987 11 + TSS region transcription start site region 139219
Tssr139220 16 87454992 to 87455057 65 + TSS region transcription start site region 139220
Cct8 16 87483325 to 87495869 12544 - protein coding gene chaperonin containing Tcp1, subunit 8 (theta)
Tssr141938 16 87490546 to 87490576 30 - TSS region transcription start site region 141938
Tssr141939 16 87491343 to 87491365 22 - TSS region transcription start site region 141939
Cpgi8399 16 87495225 to 87496340 1115 CpG island CpG island 8399
Tssr141940 16 87495807 to 87495820 13 - TSS region transcription start site region 141940
Tssr141941 16 87495823 to 87495877 54 - TSS region transcription start site region 141941
Tssr139221 16 87495983 to 87496062 79 + TSS region transcription start site region 139221
B130034C11Rik 16 87496073 to 87504038 7965 + lncRNA gene RIKEN cDNA B130034C11 gene
Gm24891 16 87528030 to 87528165 135 - snoRNA gene predicted gene, 24891
Rpl31-ps4 16 87549062 to 87549451 389 - pseudogene ribosomal protein L31, pseudogene 4
Tssr139222 16 87553313 to 87553342 29 + TSS region transcription start site region 139222
Map3k7cl 16 87553330 to 87595336 42006 + protein coding gene Map3k7 C-terminal like
Tssr139223 16 87553402 to 87553413 11 + TSS region transcription start site region 139223
Tssr139224 16 87553415 to 87553472 57 + TSS region transcription start site region 139224
Tssr139225 16 87553517 to 87553530 13 + TSS region transcription start site region 139225
Tssr141942 16 87554234 to 87554246 12 - TSS region transcription start site region 141942