Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 16:86641229-88801413

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145 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm49572 16 86758899 to 86759376 477 + pseudogene predicted gene, 49572
Gm32461 16 86770227 to 86806513 36286 - lincRNA gene predicted gene, 32461
Tssr141926 16 86805521 to 86805538 17 - TSS region transcription start site region 141926
Tssr141927 16 86806358 to 86806368 10 - TSS region transcription start site region 141927
Tssr141928 16 86806507 to 86806520 13 - TSS region transcription start site region 141928
Tssr141929 16 86808802 to 86808825 23 - TSS region transcription start site region 141929
Tssr139214 16 86816885 to 86816902 17 + TSS region transcription start site region 139214
Tssr139215 16 86816904 to 86816920 16 + TSS region transcription start site region 139215
Gm32624 16 86816914 to 86877360 60446 + lincRNA gene predicted gene, 32624
Gm25715 16 86845470 to 86845594 124 + snoRNA gene predicted gene, 25715
Gm38477 16 87000938 to 87049283 48345 - lincRNA gene predicted gene, 38477
Tssr141930 16 87049255 to 87049264 9 - TSS region transcription start site region 141930
Gm32865 16 87125036 to 87128439 3403 - lincRNA gene predicted gene, 32865
Tssr141931 16 87128417 to 87128467 50 - TSS region transcription start site region 141931
Gm41484 16 87240837 to 87246693 5856 - lncRNA gene predicted gene, 41484
Cpgi8393 16 87246289 to 87246597 308 CpG island CpG island 8393
D16Mit69 16 87285438 to 87285514 76 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 69
Tssr139216 16 87304050 to 87304058 8 + TSS region transcription start site region 139216
Cpgi8394 16 87354037 to 87354595 558 CpG island CpG island 8394
Tssr141932 16 87354176 to 87354184 8 - TSS region transcription start site region 141932
N6amt1 16 87354185 to 87368649 14464 + protein coding gene N-6 adenine-specific DNA methyltransferase 1 (putative)
Tssr139217 16 87354204 to 87354249 45 + TSS region transcription start site region 139217
Ltn1 16 87376651 to 87432612 55961 - protein coding gene listerin E3 ubiquitin protein ligase 1
Gm25896 16 87418909 to 87419044 135 - snoRNA gene predicted gene, 25896
Cpgi8395 16 87431953 to 87432785 832 CpG island CpG island 8395
Tssr141933 16 87432484 to 87432548 64 - TSS region transcription start site region 141933
Tssr141934 16 87432597 to 87432613 16 - TSS region transcription start site region 141934
Rwdd2b 16 87433407 to 87440573 7166 - protein coding gene RWD domain containing 2B
Cpgi8396 16 87437106 to 87437368 262 CpG island CpG island 8396
Cpgi8397 16 87440136 to 87440761 625 CpG island CpG island 8397
Tssr141935 16 87440498 to 87440542 44 - TSS region transcription start site region 141935
Tssr141936 16 87440551 to 87440612 61 - TSS region transcription start site region 141936
Tssr139218 16 87440602 to 87440637 35 + TSS region transcription start site region 139218
Tssr141937 16 87443216 to 87443220 4 - TSS region transcription start site region 141937
Usp16 16 87454708 to 87483515 28807 + protein coding gene ubiquitin specific peptidase 16
Cpgi8398 16 87454750 to 87455689 939 CpG island CpG island 8398
Tssr139219 16 87454976 to 87454987 11 + TSS region transcription start site region 139219
Tssr139220 16 87454992 to 87455057 65 + TSS region transcription start site region 139220
Cct8 16 87483325 to 87495869 12544 - protein coding gene chaperonin containing Tcp1, subunit 8 (theta)
Tssr141938 16 87490546 to 87490576 30 - TSS region transcription start site region 141938
Tssr141939 16 87491343 to 87491365 22 - TSS region transcription start site region 141939
Cpgi8399 16 87495225 to 87496340 1115 CpG island CpG island 8399
Tssr141940 16 87495807 to 87495820 13 - TSS region transcription start site region 141940
Tssr141941 16 87495823 to 87495877 54 - TSS region transcription start site region 141941
Tssr139221 16 87495983 to 87496062 79 + TSS region transcription start site region 139221
B130034C11Rik 16 87496073 to 87504038 7965 + lncRNA gene RIKEN cDNA B130034C11 gene
Gm24891 16 87528030 to 87528165 135 - snoRNA gene predicted gene, 24891
Rpl31-ps4 16 87549062 to 87549451 389 - pseudogene ribosomal protein L31, pseudogene 4
Tssr139222 16 87553313 to 87553342 29 + TSS region transcription start site region 139222
Map3k7cl 16 87553330 to 87595336 42006 + protein coding gene Map3k7 C-terminal like
Tssr139223 16 87553402 to 87553413 11 + TSS region transcription start site region 139223
Tssr139224 16 87553415 to 87553472 57 + TSS region transcription start site region 139224
Tssr139225 16 87553517 to 87553530 13 + TSS region transcription start site region 139225
Tssr141942 16 87554234 to 87554246 12 - TSS region transcription start site region 141942
D16Mit153 16 87583364 to 87583632 268 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 153
Renf2 16 87583364 to 87583632 268 QTL renal failure 2
Gm41485 16 87602429 to 87616283 13854 - lncRNA gene predicted gene, 41485
Tssr141943 16 87612339 to 87612350 11 - TSS region transcription start site region 141943
Tssr141944 16 87612559 to 87612564 5 - TSS region transcription start site region 141944
Gm22808 16 87621014 to 87621120 106 - snRNA gene predicted gene, 22808
Tssr141945 16 87634947 to 87634952 5 - TSS region transcription start site region 141945
Tssr141946 16 87654291 to 87654298 7 - TSS region transcription start site region 141946
Tssr139226 16 87661410 to 87661442 32 + TSS region transcription start site region 139226
D16Ium41 16 87665620 to 87665833 213 DNA segment DNA segment, Chr 16, Indiana University Medical 41
Tssr139227 16 87692462 to 87692463 1 + TSS region transcription start site region 139227
Cpgi8400 16 87698496 to 87699583 1087 CpG island CpG island 8400
Tssr139228 16 87698904 to 87698959 55 + TSS region transcription start site region 139228
Bach1 16 87698954 to 87733346 34392 + protein coding gene BTB and CNC homology 1, basic leucine zipper transcription factor 1
Tssr139229 16 87698961 to 87698984 23 + TSS region transcription start site region 139229
Tssr139230 16 87698992 to 87699034 42 + TSS region transcription start site region 139230
Tssr139231 16 87699054 to 87699058 4 + TSS region transcription start site region 139231
Tssr141947 16 87700056 to 87700066 10 - TSS region transcription start site region 141947
Tssr139232 16 87700155 to 87700168 13 + TSS region transcription start site region 139232
Tssr139233 16 87700200 to 87700213 13 + TSS region transcription start site region 139233
Tssr139234 16 87719115 to 87719164 49 + TSS region transcription start site region 139234
Tssr139235 16 87720900 to 87720905 5 + TSS region transcription start site region 139235
Cpgi8401 16 87721229 to 87721413 184 CpG island CpG island 8401
Cpgi8402 16 87725898 to 87726206 308 CpG island CpG island 8402
Tssr139236 16 87729071 to 87729084 13 + TSS region transcription start site region 139236
Tssr139237 16 87729737 to 87729759 22 + TSS region transcription start site region 139237
Tssr139238 16 87731521 to 87731525 4 + TSS region transcription start site region 139238
Tssr139239 16 87732652 to 87732658 6 + TSS region transcription start site region 139239
Cpgi8403 16 87736060 to 87736288 228 CpG island CpG island 8403
Tssr141948 16 87736900 to 87736926 26 - TSS region transcription start site region 141948
Gm32925 16 87737943 to 87799641 61698 + lncRNA gene predicted gene, 32925
D16Mit191 16 87755787 to 87755907 120 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 191
Gm23994 16 87761556 to 87761643 87 - snoRNA gene predicted gene, 23994
Tssr139240 16 87787540 to 87787551 11 + TSS region transcription start site region 139240
Tssr139241 16 87823756 to 87823761 5 + TSS region transcription start site region 139241
2810407A14Rik 16 87823950 to 87872183 48233 + lincRNA gene RIKEN cDNA 2810407A14 gene
Grik1 16 87895900 to 88290265 394365 - protein coding gene glutamate receptor, ionotropic, kainate 1
Tssr141949 16 87902275 to 87902280 5 - TSS region transcription start site region 141949
4930590A17Rik 16 87933354 to 88012206 78852 + lncRNA gene RIKEN cDNA 4930590A17 gene
D16Ium72 16 87965542 to 87965723 181 DNA segment DNA segment, Chr 16, Indiana University Medical 72
Gm33207 16 88012366 to 88016443 4077 + lncRNA gene predicted gene, 33207
Gm46553 16 88134754 to 88142516 7762 - lncRNA gene predicted gene, 46553
Tssr141950 16 88167438 to 88167439 1 - TSS region transcription start site region 141950
Gm41486 16 88224657 to 88226200 1543 + lncRNA gene predicted gene, 41486
Tssr141951 16 88225432 to 88225446 14 - TSS region transcription start site region 141951
Tssr139242 16 88225518 to 88225544 26 + TSS region transcription start site region 139242
Cpgi8404 16 88289377 to 88290583 1206 CpG island CpG island 8404
Tssr141952 16 88290186 to 88290197 11 - TSS region transcription start site region 141952
Tssr141953 16 88290199 to 88290226 27 - TSS region transcription start site region 141953
Gm33255 16 88367902 to 88381696 13794 - lincRNA gene predicted gene, 33255
4930420G21Rik 16 88376609 to 88443450 66841 + lincRNA gene RIKEN cDNA 4930420G21 gene
Gm46546 16 88459945 to 88460193 248 + pseudogene predicted gene, 46546
Cldn17 16 88505807 to 88506978 1171 - protein coding gene claudin 17
Tssr141954 16 88506956 to 88506965 9 - TSS region transcription start site region 141954
Tssr141955 16 88506971 to 88506994 23 - TSS region transcription start site region 141955
Cldn8 16 88560828 to 88563183 2355 - protein coding gene claudin 8
Cpgi8405 16 88562388 to 88562732 344 CpG island CpG island 8405
Tssr141956 16 88563019 to 88563026 7 - TSS region transcription start site region 141956
Tssr141957 16 88563058 to 88563070 12 - TSS region transcription start site region 141957
Tssr141958 16 88563107 to 88563118 11 - TSS region transcription start site region 141958
Tssr141959 16 88563130 to 88563141 11 - TSS region transcription start site region 141959
Tssr141960 16 88563144 to 88563147 3 - TSS region transcription start site region 141960
Tssr141961 16 88563149 to 88563164 15 - TSS region transcription start site region 141961
Tssr141962 16 88563166 to 88563200 34 - TSS region transcription start site region 141962
Tssr141963 16 88563201 to 88563214 13 - TSS region transcription start site region 141963
D16Ium45 16 88581459 to 88581618 159 DNA segment DNA segment, Chr 16, Indiana University Medical 45
Gm33372 16 88592288 to 88596750 4462 - lncRNA gene predicted gene, 33372
Gm49688 16 88608670 to 88638214 29544 + lincRNA gene predicted gene, 49688
Tssr139243 16 88608716 to 88608724 8 + TSS region transcription start site region 139243
Krtap24-1 16 88610709 to 88612279 1570 - protein coding gene keratin associated protein 24-1
Tssr141964 16 88612273 to 88612279 6 - TSS region transcription start site region 141964
Gm23587 16 88614527 to 88614610 83 - snRNA gene predicted gene, 23587
2310079G19Rik 16 88626788 to 88627666 878 - protein coding gene RIKEN cDNA 2310079G19 gene
Tssr141965 16 88627658 to 88627667 9 - TSS region transcription start site region 141965
Krtap26-1 16 88646824 to 88647796 972 - protein coding gene keratin associated protein 26-1
Tssr141966 16 88647786 to 88647799 13 - TSS region transcription start site region 141966
Krtap27-1 16 88671046 to 88671654 608 - protein coding gene keratin associated protein 27-1
Tssr141967 16 88671721 to 88671726 5 - TSS region transcription start site region 141967
Gm7667 16 88682104 to 88682728 624 - pseudogene predicted gene 7667
2310061N02Rik 16 88707171 to 88707962 791 - protein coding gene RIKEN cDNA 2310061N02 gene
Tssr141968 16 88707961 to 88707965 4 - TSS region transcription start site region 141968
Tssr139244 16 88728828 to 88728845 17 + TSS region transcription start site region 139244
Krtap13-1 16 88728862 to 88729611 749 + protein coding gene keratin associated protein 13-1
Cpgi8406 16 88750235 to 88750481 246 CpG island CpG island 8406
Krtap13 16 88750744 to 88751628 884 - protein coding gene keratin associated protein 13
Tssr4949 16 88758844 to 88758851 7 + TSS region transcription start site region 4949
2310034C09Rik 16 88758847 to 88759789 942 + protein coding gene RIKEN cDNA 2310034C09 gene
2310057N15Rik 16 88773181 to 88774206 1025 - protein coding gene RIKEN cDNA 2310057N15 gene
Tssr141969 16 88774201 to 88774206 5 - TSS region transcription start site region 141969
Tssr139245 16 88777829 to 88777835 6 + TSS region transcription start site region 139245
Gm5965 16 88777896 to 88778528 632 + protein coding gene predicted gene 5965