Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 16:85153069-87533073

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117 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Bwtn1 16 20200579 to 85803938 65603359 QTL body weight at necropsy 1
Dp(16Hspa13-App)2Yah 16 75755190 to 85173952 9418762 chromosomal duplication duplication, Chr 16, Yann Herault 2
Del(16Hspa13-App)3Yah 16 75755190 to 85173952 9418762 cytogenetic marker deletion, Chr 16, Yann Herault 3
App 16 84952666 to 85173952 221286 - protein coding gene amyloid beta (A4) precursor protein
Gm49226 16 85148829 to 85155274 6445 + antisense lncRNA gene predicted gene, 49226
Tssr141898 16 85163037 to 85163041 4 - TSS region transcription start site region 141898
Tssr141899 16 85163695 to 85163718 23 - TSS region transcription start site region 141899
Gm27295 16 85168849 to 85169001 152 + snoRNA gene predicted gene, 27295
Cpgi8388 16 85172400 to 85174139 1739 CpG island CpG island 8388
Tssr141900 16 85173692 to 85173718 26 - TSS region transcription start site region 141900
Tssr141901 16 85173729 to 85173747 18 - TSS region transcription start site region 141901
Gm41482 16 85215379 to 85217530 2151 + lncRNA gene predicted gene, 41482
Gm41483 16 85323353 to 85377668 54315 + lncRNA gene predicted gene, 41483
D16Mit179 16 85367403 to 85367541 138 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 179
Cyyr1 16 85452858 to 85550905 98047 - protein coding gene cysteine and tyrosine-rich protein 1
Tssr141902 16 85455123 to 85455127 4 - TSS region transcription start site region 141902
Tssr141903 16 85456775 to 85456786 11 - TSS region transcription start site region 141903
Tssr141904 16 85494348 to 85494350 2 - TSS region transcription start site region 141904
Tssr141905 16 85497270 to 85497274 4 - TSS region transcription start site region 141905
Tssr141906 16 85542582 to 85542590 8 - TSS region transcription start site region 141906
Tssr139209 16 85546997 to 85547007 10 + TSS region transcription start site region 139209
Cpgi8389 16 85550051 to 85550337 286 CpG island CpG island 8389
Tssr141907 16 85550153 to 85550177 24 - TSS region transcription start site region 141907
Tssr4947 16 85550314 to 85550317 3 - TSS region transcription start site region 4947
Tssr141908 16 85550386 to 85550402 16 - TSS region transcription start site region 141908
Tssr141909 16 85550424 to 85550432 8 - TSS region transcription start site region 141909
Gm2541 16 85553236 to 85553943 707 - pseudogene predicted pseudogene 2541
Gm6278 16 85644252 to 85645023 771 + pseudogene predicted gene 6278
Adamts1 16 85793827 to 85803113 9286 - protein coding gene a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 1
Cpgi8390 16 85801239 to 85803474 2235 CpG island CpG island 8390
Tssr141910 16 85801280 to 85801284 4 - TSS region transcription start site region 141910
Tssr141911 16 85803106 to 85803121 15 - TSS region transcription start site region 141911
Pgia10 16 85803834 to 85803938 104 QTL proteoglycan induced arthritis 10
D16Mit152 16 85803834 to 85803938 104 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 152
Tssr141912 16 85803955 to 85803961 6 - TSS region transcription start site region 141912
4930556C24Rik 16 85819211 to 85826769 7558 + lincRNA gene RIKEN cDNA 4930556C24 gene
Tssr139210 16 85819239 to 85819244 5 + TSS region transcription start site region 139210
Tssr139211 16 85819246 to 85819257 11 + TSS region transcription start site region 139211
Adamts5 16 85858157 to 85901125 42968 - protein coding gene a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 5 (aggrecanase-2)
Cpgi8391 16 85899231 to 85900472 1241 CpG island CpG island 8391
Tssr141913 16 85899334 to 85899356 22 - TSS region transcription start site region 141913
Gm46558 16 85899909 to 85905197 5288 + lncRNA gene predicted gene, 46558
Tssr141914 16 85900230 to 85900252 22 - TSS region transcription start site region 141914
Tssr141915 16 85900265 to 85900280 15 - TSS region transcription start site region 141915
Tssr141916 16 85900294 to 85900309 15 - TSS region transcription start site region 141916
Tssr141917 16 85900603 to 85900633 30 - TSS region transcription start site region 141917
Cpgi8392 16 85900631 to 85901310 679 CpG island CpG island 8392
Tssr141918 16 85900681 to 85900691 10 - TSS region transcription start site region 141918
Tssr141919 16 85900719 to 85900745 26 - TSS region transcription start site region 141919
Tssr141920 16 85901056 to 85901071 15 - TSS region transcription start site region 141920
Tssr141921 16 85901118 to 85901133 15 - TSS region transcription start site region 141921
Tssr141922 16 85901347 to 85901362 15 - TSS region transcription start site region 141922
Tssr141923 16 85901792 to 85901828 36 - TSS region transcription start site region 141923
Gm49570 16 86015455 to 86015857 402 + pseudogene predicted gene, 49570
Tssr139212 16 86044973 to 86044984 11 + TSS region transcription start site region 139212
1700007H22Rik 16 86139304 to 86150676 11372 - lincRNA gene RIKEN cDNA 1700007H22 gene
D16Mit70 16 86209075 to 86209261 186 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 70
Gm32357 16 86236171 to 86269150 32979 + lincRNA gene predicted gene, 32357
D16Mit224 16 86279244 to 86279466 222 DNA segment DNA Segment, Chr 16, Massachusetts Institute of Technology 224
Tauph 16 86279244 to 86279466 222 QTL tau phosphorylation
D16Mit94 16 86289850 to 86289972 122 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 94
Tssr4948 16 86303104 to 86303105 1 + TSS region transcription start site region 4948
D16Mit7 16 86330723 to 86330883 160 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 7
Lmr18 16 86330723 to 86330883 160 QTL leishmaniasis resistance 18
Lmr18a 16 86330723 to 86330883 160 QTL leishmaniasis resistance 18a
Lmr18b 16 86330723 to 86330883 160 QTL leishmaniasis resistance 18b
Tssr139213 16 86343069 to 86343073 4 + TSS region transcription start site region 139213
Tssr141924 16 86358191 to 86358197 6 - TSS region transcription start site region 141924
Cocia19 16 86457594 to 86457594 0 QTL cocaine-induced activity, QTL 19
Tssr141925 16 86472908 to 86472915 7 - TSS region transcription start site region 141925
Gm49572 16 86758899 to 86759376 477 + pseudogene predicted gene, 49572
Gm32461 16 86770227 to 86806513 36286 - lincRNA gene predicted gene, 32461
Tssr141926 16 86805521 to 86805538 17 - TSS region transcription start site region 141926
Tssr141927 16 86806358 to 86806368 10 - TSS region transcription start site region 141927
Tssr141928 16 86806507 to 86806520 13 - TSS region transcription start site region 141928
Tssr141929 16 86808802 to 86808825 23 - TSS region transcription start site region 141929
Tssr139214 16 86816885 to 86816902 17 + TSS region transcription start site region 139214
Tssr139215 16 86816904 to 86816920 16 + TSS region transcription start site region 139215
Gm32624 16 86816914 to 86877360 60446 + lincRNA gene predicted gene, 32624
Gm25715 16 86845470 to 86845594 124 + snoRNA gene predicted gene, 25715
Gm38477 16 87000938 to 87049283 48345 - lincRNA gene predicted gene, 38477
Tssr141930 16 87049255 to 87049264 9 - TSS region transcription start site region 141930
Gm32865 16 87125036 to 87128439 3403 - lincRNA gene predicted gene, 32865
Tssr141931 16 87128417 to 87128467 50 - TSS region transcription start site region 141931
Gm41484 16 87240837 to 87246693 5856 - lncRNA gene predicted gene, 41484
Cpgi8393 16 87246289 to 87246597 308 CpG island CpG island 8393
D16Mit69 16 87285438 to 87285514 76 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 69
Tssr139216 16 87304050 to 87304058 8 + TSS region transcription start site region 139216
Cpgi8394 16 87354037 to 87354595 558 CpG island CpG island 8394
Tssr141932 16 87354176 to 87354184 8 - TSS region transcription start site region 141932
N6amt1 16 87354185 to 87368649 14464 + protein coding gene N-6 adenine-specific DNA methyltransferase 1 (putative)
Tssr139217 16 87354204 to 87354249 45 + TSS region transcription start site region 139217
Ltn1 16 87376651 to 87432612 55961 - protein coding gene listerin E3 ubiquitin protein ligase 1
Gm25896 16 87418909 to 87419044 135 - snoRNA gene predicted gene, 25896
Cpgi8395 16 87431953 to 87432785 832 CpG island CpG island 8395
Tssr141933 16 87432484 to 87432548 64 - TSS region transcription start site region 141933
Tssr141934 16 87432597 to 87432613 16 - TSS region transcription start site region 141934
Rwdd2b 16 87433407 to 87440573 7166 - protein coding gene RWD domain containing 2B
Cpgi8396 16 87437106 to 87437368 262 CpG island CpG island 8396
Cpgi8397 16 87440136 to 87440761 625 CpG island CpG island 8397
Tssr141935 16 87440498 to 87440542 44 - TSS region transcription start site region 141935
Tssr141936 16 87440551 to 87440612 61 - TSS region transcription start site region 141936
Tssr139218 16 87440602 to 87440637 35 + TSS region transcription start site region 139218
Tssr141937 16 87443216 to 87443220 4 - TSS region transcription start site region 141937
Usp16 16 87454708 to 87483515 28807 + protein coding gene ubiquitin specific peptidase 16
Cpgi8398 16 87454750 to 87455689 939 CpG island CpG island 8398
Tssr139219 16 87454976 to 87454987 11 + TSS region transcription start site region 139219
Tssr139220 16 87454992 to 87455057 65 + TSS region transcription start site region 139220
Cct8 16 87483325 to 87495869 12544 - protein coding gene chaperonin containing Tcp1, subunit 8 (theta)
Tssr141938 16 87490546 to 87490576 30 - TSS region transcription start site region 141938
Tssr141939 16 87491343 to 87491365 22 - TSS region transcription start site region 141939
Cpgi8399 16 87495225 to 87496340 1115 CpG island CpG island 8399
Tssr141940 16 87495807 to 87495820 13 - TSS region transcription start site region 141940
Tssr141941 16 87495823 to 87495877 54 - TSS region transcription start site region 141941
Tssr139221 16 87495983 to 87496062 79 + TSS region transcription start site region 139221
B130034C11Rik 16 87496073 to 87504038 7965 + lncRNA gene RIKEN cDNA B130034C11 gene
Gm24891 16 87528030 to 87528165 135 - snoRNA gene predicted gene, 24891