Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 16:84787594-88127594

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227 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Bwtn1 16 20200579 to 85803938 65603359 QTL body weight at necropsy 1
Del(16Hspa13-App)3Yah 16 75755190 to 85173952 9418762 cytogenetic marker deletion, Chr 16, Yann Herault 3
Dp(16Hspa13-App)2Yah 16 75755190 to 85173952 9418762 chromosomal duplication duplication, Chr 16, Yann Herault 2
Jam2 16 84774123 to 84825928 51805 + protein coding gene junction adhesion molecule 2
Tssr139192 16 84793546 to 84793556 10 + TSS region transcription start site region 139192
Tssr139193 16 84793560 to 84793574 14 + TSS region transcription start site region 139193
Gm46557 16 84817278 to 84821253 3975 - lncRNA gene predicted gene, 46557
Gm25908 16 84818097 to 84818194 97 + rRNA gene predicted gene, 25908
Atp5j 16 84827871 to 84835625 7754 - protein coding gene ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F
Tssr141868 16 84831786 to 84831799 13 - TSS region transcription start site region 141868
Cpgi8385 16 84834434 to 84836243 1809 CpG island CpG island 8385
Tssr141869 16 84834848 to 84834874 26 - TSS region transcription start site region 141869
Tssr141870 16 84834876 to 84834885 9 - TSS region transcription start site region 141870
Tssr139194 16 84834880 to 84834887 7 + TSS region transcription start site region 139194
Tssr139195 16 84834901 to 84834941 40 + TSS region transcription start site region 139195
Gabpa 16 84834925 to 84863779 28854 + protein coding gene GA repeat binding protein, alpha
Tssr139196 16 84834943 to 84834955 12 + TSS region transcription start site region 139196
Tssr141871 16 84834964 to 84834976 12 - TSS region transcription start site region 141871
Tssr141872 16 84834979 to 84835015 36 - TSS region transcription start site region 141872
Tssr139197 16 84835043 to 84835056 13 + TSS region transcription start site region 139197
Tssr139198 16 84835070 to 84835097 27 + TSS region transcription start site region 139198
Tssr141873 16 84835269 to 84835294 25 - TSS region transcription start site region 141873
Tssr141874 16 84835295 to 84835311 16 - TSS region transcription start site region 141874
Tssr139199 16 84835325 to 84835339 14 + TSS region transcription start site region 139199
Tssr141875 16 84835326 to 84835336 10 - TSS region transcription start site region 141875
Tssr139200 16 84835340 to 84835351 11 + TSS region transcription start site region 139200
Tssr139201 16 84835360 to 84835421 61 + TSS region transcription start site region 139201
Tssr141876 16 84835463 to 84835481 18 - TSS region transcription start site region 141876
Tssr141877 16 84835484 to 84835534 50 - TSS region transcription start site region 141877
Tssr141878 16 84835557 to 84835617 60 - TSS region transcription start site region 141878
Tssr141879 16 84835626 to 84835635 9 - TSS region transcription start site region 141879
Tssr141880 16 84835655 to 84835669 14 - TSS region transcription start site region 141880
Tssr139202 16 84852610 to 84852619 9 + TSS region transcription start site region 139202
Tssr139203 16 84852891 to 84852897 6 + TSS region transcription start site region 139203
Cpgi8386 16 84875147 to 84875326 179 CpG island CpG island 8386
Gm49568 16 84892662 to 84893832 1170 - pseudogene predicted gene, 49568
D16Mit190 16 84911227 to 84911330 103 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 190
App 16 84952666 to 85173952 221286 - protein coding gene amyloid beta (A4) precursor protein
Del(16App-Runx1)5Yah 16 84952666 to 92826074 7873408 chromosomal deletion deletion, Chr 16, Yann Herault 5
Tssr141881 16 84955312 to 84955349 37 - TSS region transcription start site region 141881
Tssr141882 16 84955415 to 84955438 23 - TSS region transcription start site region 141882
Gm10791 16 84972214 to 84979451 7237 + antisense lncRNA gene predicted gene 10791
Tssr141883 16 84977944 to 84977957 13 - TSS region transcription start site region 141883
Tssr141884 16 84977970 to 84977985 15 - TSS region transcription start site region 141884
Gm49228 16 85021622 to 85022017 395 + pseudogene predicted gene, 49228
Tssr141885 16 85024887 to 85024931 44 - TSS region transcription start site region 141885
Tssr141886 16 85034398 to 85034401 3 - TSS region transcription start site region 141886
Tssr141887 16 85044106 to 85044110 4 - TSS region transcription start site region 141887
Tssr139204 16 85056371 to 85056391 20 + TSS region transcription start site region 139204
Tssr139205 16 85056398 to 85056448 50 + TSS region transcription start site region 139205
Tssr141888 16 85056409 to 85056426 17 - TSS region transcription start site region 141888
Tssr139206 16 85072069 to 85072101 32 + TSS region transcription start site region 139206
Cpgi8387 16 85079826 to 85080296 470 CpG island CpG island 8387
Tssr141889 16 85079861 to 85079876 15 - TSS region transcription start site region 141889
Tssr141890 16 85079883 to 85079898 15 - TSS region transcription start site region 141890
Tssr141891 16 85079927 to 85079942 15 - TSS region transcription start site region 141891
Tssr141892 16 85079945 to 85079965 20 - TSS region transcription start site region 141892
Gm49227 16 85080111 to 85083392 3281 + antisense lncRNA gene predicted gene, 49227
Tssr141893 16 85082865 to 85082887 22 - TSS region transcription start site region 141893
Tssr141894 16 85103325 to 85103341 16 - TSS region transcription start site region 141894
Tssr141895 16 85120572 to 85120602 30 - TSS region transcription start site region 141895
Tssr141896 16 85123834 to 85123839 5 - TSS region transcription start site region 141896
Tssr139207 16 85132407 to 85132453 46 + TSS region transcription start site region 139207
Tssr4946 16 85139362 to 85139369 7 - TSS region transcription start site region 4946
Tssr141897 16 85141232 to 85141269 37 - TSS region transcription start site region 141897
Gm49226 16 85148829 to 85155274 6445 + antisense lncRNA gene predicted gene, 49226
Tssr139208 16 85152776 to 85152794 18 + TSS region transcription start site region 139208
Tssr141898 16 85163037 to 85163041 4 - TSS region transcription start site region 141898
Tssr141899 16 85163695 to 85163718 23 - TSS region transcription start site region 141899
Gm27295 16 85168849 to 85169001 152 + snoRNA gene predicted gene, 27295
Cpgi8388 16 85172400 to 85174139 1739 CpG island CpG island 8388
Tssr141900 16 85173692 to 85173718 26 - TSS region transcription start site region 141900
Tssr141901 16 85173729 to 85173747 18 - TSS region transcription start site region 141901
Gm41482 16 85215379 to 85217530 2151 + lncRNA gene predicted gene, 41482
Gm41483 16 85323353 to 85377668 54315 + lncRNA gene predicted gene, 41483
D16Mit179 16 85367403 to 85367541 138 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 179
Cyyr1 16 85452858 to 85550905 98047 - protein coding gene cysteine and tyrosine-rich protein 1
Tssr141902 16 85455123 to 85455127 4 - TSS region transcription start site region 141902
Tssr141903 16 85456775 to 85456786 11 - TSS region transcription start site region 141903
Tssr141904 16 85494348 to 85494350 2 - TSS region transcription start site region 141904
Tssr141905 16 85497270 to 85497274 4 - TSS region transcription start site region 141905
Tssr141906 16 85542582 to 85542590 8 - TSS region transcription start site region 141906
Tssr139209 16 85546997 to 85547007 10 + TSS region transcription start site region 139209
Cpgi8389 16 85550051 to 85550337 286 CpG island CpG island 8389
Tssr141907 16 85550153 to 85550177 24 - TSS region transcription start site region 141907
Tssr4947 16 85550314 to 85550317 3 - TSS region transcription start site region 4947
Tssr141908 16 85550386 to 85550402 16 - TSS region transcription start site region 141908
Tssr141909 16 85550424 to 85550432 8 - TSS region transcription start site region 141909
Gm2541 16 85553236 to 85553943 707 - pseudogene predicted pseudogene 2541
Gm6278 16 85644252 to 85645023 771 + pseudogene predicted gene 6278
Adamts1 16 85793827 to 85803113 9286 - protein coding gene a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 1
Cpgi8390 16 85801239 to 85803474 2235 CpG island CpG island 8390
Tssr141910 16 85801280 to 85801284 4 - TSS region transcription start site region 141910
Tssr141911 16 85803106 to 85803121 15 - TSS region transcription start site region 141911
D16Mit152 16 85803834 to 85803938 104 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 152
Pgia10 16 85803834 to 85803938 104 QTL proteoglycan induced arthritis 10
Tssr141912 16 85803955 to 85803961 6 - TSS region transcription start site region 141912
4930556C24Rik 16 85819211 to 85826769 7558 + lincRNA gene RIKEN cDNA 4930556C24 gene
Tssr139210 16 85819239 to 85819244 5 + TSS region transcription start site region 139210
Tssr139211 16 85819246 to 85819257 11 + TSS region transcription start site region 139211
Adamts5 16 85858157 to 85901125 42968 - protein coding gene a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 5 (aggrecanase-2)
Cpgi8391 16 85899231 to 85900472 1241 CpG island CpG island 8391
Tssr141913 16 85899334 to 85899356 22 - TSS region transcription start site region 141913
Gm46558 16 85899909 to 85905197 5288 + lncRNA gene predicted gene, 46558
Tssr141914 16 85900230 to 85900252 22 - TSS region transcription start site region 141914
Tssr141915 16 85900265 to 85900280 15 - TSS region transcription start site region 141915
Tssr141916 16 85900294 to 85900309 15 - TSS region transcription start site region 141916
Tssr141917 16 85900603 to 85900633 30 - TSS region transcription start site region 141917
Cpgi8392 16 85900631 to 85901310 679 CpG island CpG island 8392
Tssr141918 16 85900681 to 85900691 10 - TSS region transcription start site region 141918
Tssr141919 16 85900719 to 85900745 26 - TSS region transcription start site region 141919
Tssr141920 16 85901056 to 85901071 15 - TSS region transcription start site region 141920
Tssr141921 16 85901118 to 85901133 15 - TSS region transcription start site region 141921
Tssr141922 16 85901347 to 85901362 15 - TSS region transcription start site region 141922
Tssr141923 16 85901792 to 85901828 36 - TSS region transcription start site region 141923
Gm49570 16 86015455 to 86015857 402 + pseudogene predicted gene, 49570
Tssr139212 16 86044973 to 86044984 11 + TSS region transcription start site region 139212
1700007H22Rik 16 86139304 to 86150676 11372 - lincRNA gene RIKEN cDNA 1700007H22 gene
D16Mit70 16 86209075 to 86209261 186 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 70
Gm32357 16 86236171 to 86269150 32979 + lincRNA gene predicted gene, 32357
D16Mit224 16 86279244 to 86279466 222 DNA segment DNA Segment, Chr 16, Massachusetts Institute of Technology 224
Tauph 16 86279244 to 86279466 222 QTL tau phosphorylation
D16Mit94 16 86289850 to 86289972 122 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 94
Tssr4948 16 86303104 to 86303105 1 + TSS region transcription start site region 4948
D16Mit7 16 86330723 to 86330883 160 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 7
Lmr18a 16 86330723 to 86330883 160 QTL leishmaniasis resistance 18a
Lmr18 16 86330723 to 86330883 160 QTL leishmaniasis resistance 18
Lmr18b 16 86330723 to 86330883 160 QTL leishmaniasis resistance 18b
Tssr139213 16 86343069 to 86343073 4 + TSS region transcription start site region 139213
Tssr141924 16 86358191 to 86358197 6 - TSS region transcription start site region 141924
Cocia19 16 86457594 to 86457594 0 QTL cocaine-induced activity, QTL 19
Tssr141925 16 86472908 to 86472915 7 - TSS region transcription start site region 141925
Gm49572 16 86758899 to 86759376 477 + pseudogene predicted gene, 49572
Gm32461 16 86770227 to 86806513 36286 - lincRNA gene predicted gene, 32461
Tssr141926 16 86805521 to 86805538 17 - TSS region transcription start site region 141926
Tssr141927 16 86806358 to 86806368 10 - TSS region transcription start site region 141927
Tssr141928 16 86806507 to 86806520 13 - TSS region transcription start site region 141928
Tssr141929 16 86808802 to 86808825 23 - TSS region transcription start site region 141929
Tssr139214 16 86816885 to 86816902 17 + TSS region transcription start site region 139214
Tssr139215 16 86816904 to 86816920 16 + TSS region transcription start site region 139215
Gm32624 16 86816914 to 86877360 60446 + lincRNA gene predicted gene, 32624
Gm25715 16 86845470 to 86845594 124 + snoRNA gene predicted gene, 25715
Gm38477 16 87000938 to 87049283 48345 - lincRNA gene predicted gene, 38477
Tssr141930 16 87049255 to 87049264 9 - TSS region transcription start site region 141930
Gm32865 16 87125036 to 87128439 3403 - lincRNA gene predicted gene, 32865
Tssr141931 16 87128417 to 87128467 50 - TSS region transcription start site region 141931
Gm41484 16 87240837 to 87246693 5856 - lncRNA gene predicted gene, 41484
Cpgi8393 16 87246289 to 87246597 308 CpG island CpG island 8393
D16Mit69 16 87285438 to 87285514 76 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 69
Tssr139216 16 87304050 to 87304058 8 + TSS region transcription start site region 139216
Cpgi8394 16 87354037 to 87354595 558 CpG island CpG island 8394
Tssr141932 16 87354176 to 87354184 8 - TSS region transcription start site region 141932
N6amt1 16 87354185 to 87368649 14464 + protein coding gene N-6 adenine-specific DNA methyltransferase 1 (putative)
Tssr139217 16 87354204 to 87354249 45 + TSS region transcription start site region 139217
Ltn1 16 87376651 to 87432612 55961 - protein coding gene listerin E3 ubiquitin protein ligase 1
Gm25896 16 87418909 to 87419044 135 - snoRNA gene predicted gene, 25896
Cpgi8395 16 87431953 to 87432785 832 CpG island CpG island 8395
Tssr141933 16 87432484 to 87432548 64 - TSS region transcription start site region 141933
Tssr141934 16 87432597 to 87432613 16 - TSS region transcription start site region 141934
Rwdd2b 16 87433407 to 87440573 7166 - protein coding gene RWD domain containing 2B
Cpgi8396 16 87437106 to 87437368 262 CpG island CpG island 8396
Cpgi8397 16 87440136 to 87440761 625 CpG island CpG island 8397
Tssr141935 16 87440498 to 87440542 44 - TSS region transcription start site region 141935
Tssr141936 16 87440551 to 87440612 61 - TSS region transcription start site region 141936
Tssr139218 16 87440602 to 87440637 35 + TSS region transcription start site region 139218
Tssr141937 16 87443216 to 87443220 4 - TSS region transcription start site region 141937
Usp16 16 87454708 to 87483515 28807 + protein coding gene ubiquitin specific peptidase 16
Cpgi8398 16 87454750 to 87455689 939 CpG island CpG island 8398
Tssr139219 16 87454976 to 87454987 11 + TSS region transcription start site region 139219
Tssr139220 16 87454992 to 87455057 65 + TSS region transcription start site region 139220
Cct8 16 87483325 to 87495869 12544 - protein coding gene chaperonin containing Tcp1, subunit 8 (theta)
Tssr141938 16 87490546 to 87490576 30 - TSS region transcription start site region 141938
Tssr141939 16 87491343 to 87491365 22 - TSS region transcription start site region 141939
Cpgi8399 16 87495225 to 87496340 1115 CpG island CpG island 8399
Tssr141940 16 87495807 to 87495820 13 - TSS region transcription start site region 141940
Tssr141941 16 87495823 to 87495877 54 - TSS region transcription start site region 141941
Tssr139221 16 87495983 to 87496062 79 + TSS region transcription start site region 139221
B130034C11Rik 16 87496073 to 87504038 7965 + lncRNA gene RIKEN cDNA B130034C11 gene
Gm24891 16 87528030 to 87528165 135 - snoRNA gene predicted gene, 24891
Rpl31-ps4 16 87549062 to 87549451 389 - pseudogene ribosomal protein L31, pseudogene 4
Tssr139222 16 87553313 to 87553342 29 + TSS region transcription start site region 139222
Map3k7cl 16 87553330 to 87595336 42006 + protein coding gene Map3k7 C-terminal like
Tssr139223 16 87553402 to 87553413 11 + TSS region transcription start site region 139223
Tssr139224 16 87553415 to 87553472 57 + TSS region transcription start site region 139224
Tssr139225 16 87553517 to 87553530 13 + TSS region transcription start site region 139225
Tssr141942 16 87554234 to 87554246 12 - TSS region transcription start site region 141942
D16Mit153 16 87583364 to 87583632 268 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 153
Renf2 16 87583364 to 87583632 268 QTL renal failure 2
Gm41485 16 87602429 to 87616283 13854 - lncRNA gene predicted gene, 41485
Tssr141943 16 87612339 to 87612350 11 - TSS region transcription start site region 141943
Tssr141944 16 87612559 to 87612564 5 - TSS region transcription start site region 141944
Gm22808 16 87621014 to 87621120 106 - snRNA gene predicted gene, 22808
Tssr141945 16 87634947 to 87634952 5 - TSS region transcription start site region 141945
Tssr141946 16 87654291 to 87654298 7 - TSS region transcription start site region 141946
Tssr139226 16 87661410 to 87661442 32 + TSS region transcription start site region 139226
D16Ium41 16 87665620 to 87665833 213 DNA segment DNA segment, Chr 16, Indiana University Medical 41
Tssr139227 16 87692462 to 87692463 1 + TSS region transcription start site region 139227
Cpgi8400 16 87698496 to 87699583 1087 CpG island CpG island 8400
Tssr139228 16 87698904 to 87698959 55 + TSS region transcription start site region 139228
Bach1 16 87698954 to 87733346 34392 + protein coding gene BTB and CNC homology 1, basic leucine zipper transcription factor 1