Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 16:84783829-85520274

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80 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Dp(16Hspa13-App)2Yah 16 75755190 to 85173952 9418762 chromosomal duplication duplication, Chr 16, Yann Herault 2
Del(16Hspa13-App)3Yah 16 75755190 to 85173952 9418762 cytogenetic marker deletion, Chr 16, Yann Herault 3
Jam2 16 84774123 to 84825928 51805 + protein coding gene junction adhesion molecule 2
Tssr139192 16 84793546 to 84793556 10 + TSS region transcription start site region 139192
Tssr139193 16 84793560 to 84793574 14 + TSS region transcription start site region 139193
Gm46557 16 84817278 to 84821253 3975 - lncRNA gene predicted gene, 46557
Gm25908 16 84818097 to 84818194 97 + rRNA gene predicted gene, 25908
Atp5j 16 84827871 to 84835625 7754 - protein coding gene ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F
Tssr141868 16 84831786 to 84831799 13 - TSS region transcription start site region 141868
Cpgi8385 16 84834434 to 84836243 1809 CpG island CpG island 8385
Tssr141869 16 84834848 to 84834874 26 - TSS region transcription start site region 141869
Tssr141870 16 84834876 to 84834885 9 - TSS region transcription start site region 141870
Tssr139194 16 84834880 to 84834887 7 + TSS region transcription start site region 139194
Tssr139195 16 84834901 to 84834941 40 + TSS region transcription start site region 139195
Gabpa 16 84834925 to 84863779 28854 + protein coding gene GA repeat binding protein, alpha
Tssr139196 16 84834943 to 84834955 12 + TSS region transcription start site region 139196
Tssr141871 16 84834964 to 84834976 12 - TSS region transcription start site region 141871
Tssr141872 16 84834979 to 84835015 36 - TSS region transcription start site region 141872
Tssr139197 16 84835043 to 84835056 13 + TSS region transcription start site region 139197
Tssr139198 16 84835070 to 84835097 27 + TSS region transcription start site region 139198
Tssr141873 16 84835269 to 84835294 25 - TSS region transcription start site region 141873
Tssr141874 16 84835295 to 84835311 16 - TSS region transcription start site region 141874
Tssr139199 16 84835325 to 84835339 14 + TSS region transcription start site region 139199
Tssr141875 16 84835326 to 84835336 10 - TSS region transcription start site region 141875
Tssr139200 16 84835340 to 84835351 11 + TSS region transcription start site region 139200
Tssr139201 16 84835360 to 84835421 61 + TSS region transcription start site region 139201
Tssr141876 16 84835463 to 84835481 18 - TSS region transcription start site region 141876
Tssr141877 16 84835484 to 84835534 50 - TSS region transcription start site region 141877
Tssr141878 16 84835557 to 84835617 60 - TSS region transcription start site region 141878
Tssr141879 16 84835626 to 84835635 9 - TSS region transcription start site region 141879
Tssr141880 16 84835655 to 84835669 14 - TSS region transcription start site region 141880
Tssr139202 16 84852610 to 84852619 9 + TSS region transcription start site region 139202
Tssr139203 16 84852891 to 84852897 6 + TSS region transcription start site region 139203
Cpgi8386 16 84875147 to 84875326 179 CpG island CpG island 8386
Gm49568 16 84892662 to 84893832 1170 - pseudogene predicted gene, 49568
D16Mit190 16 84911227 to 84911330 103 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 190
App 16 84952666 to 85173952 221286 - protein coding gene amyloid beta (A4) precursor protein
Del(16App-Runx1)5Yah 16 84952666 to 92826074 7873408 chromosomal deletion deletion, Chr 16, Yann Herault 5
Tssr141881 16 84955312 to 84955349 37 - TSS region transcription start site region 141881
Tssr141882 16 84955415 to 84955438 23 - TSS region transcription start site region 141882
Gm10791 16 84972214 to 84979451 7237 + antisense lncRNA gene predicted gene 10791
Tssr141883 16 84977944 to 84977957 13 - TSS region transcription start site region 141883
Tssr141884 16 84977970 to 84977985 15 - TSS region transcription start site region 141884
Gm49228 16 85021622 to 85022017 395 + pseudogene predicted gene, 49228
Tssr141885 16 85024887 to 85024931 44 - TSS region transcription start site region 141885
Tssr141886 16 85034398 to 85034401 3 - TSS region transcription start site region 141886
Tssr141887 16 85044106 to 85044110 4 - TSS region transcription start site region 141887
Tssr139204 16 85056371 to 85056391 20 + TSS region transcription start site region 139204
Tssr139205 16 85056398 to 85056448 50 + TSS region transcription start site region 139205
Tssr141888 16 85056409 to 85056426 17 - TSS region transcription start site region 141888
Tssr139206 16 85072069 to 85072101 32 + TSS region transcription start site region 139206
Cpgi8387 16 85079826 to 85080296 470 CpG island CpG island 8387
Tssr141889 16 85079861 to 85079876 15 - TSS region transcription start site region 141889
Tssr141890 16 85079883 to 85079898 15 - TSS region transcription start site region 141890
Tssr141891 16 85079927 to 85079942 15 - TSS region transcription start site region 141891
Tssr141892 16 85079945 to 85079965 20 - TSS region transcription start site region 141892
Gm49227 16 85080111 to 85083392 3281 + antisense lncRNA gene predicted gene, 49227
Tssr141893 16 85082865 to 85082887 22 - TSS region transcription start site region 141893
Tssr141894 16 85103325 to 85103341 16 - TSS region transcription start site region 141894
Tssr141895 16 85120572 to 85120602 30 - TSS region transcription start site region 141895
Tssr141896 16 85123834 to 85123839 5 - TSS region transcription start site region 141896
Tssr139207 16 85132407 to 85132453 46 + TSS region transcription start site region 139207
Tssr4946 16 85139362 to 85139369 7 - TSS region transcription start site region 4946
Tssr141897 16 85141232 to 85141269 37 - TSS region transcription start site region 141897
Gm49226 16 85148829 to 85155274 6445 + antisense lncRNA gene predicted gene, 49226
Tssr139208 16 85152776 to 85152794 18 + TSS region transcription start site region 139208
Tssr141898 16 85163037 to 85163041 4 - TSS region transcription start site region 141898
Tssr141899 16 85163695 to 85163718 23 - TSS region transcription start site region 141899
Gm27295 16 85168849 to 85169001 152 + snoRNA gene predicted gene, 27295
Cpgi8388 16 85172400 to 85174139 1739 CpG island CpG island 8388
Tssr141900 16 85173692 to 85173718 26 - TSS region transcription start site region 141900
Tssr141901 16 85173729 to 85173747 18 - TSS region transcription start site region 141901
Gm41482 16 85215379 to 85217530 2151 + lncRNA gene predicted gene, 41482
Gm41483 16 85323353 to 85377668 54315 + lncRNA gene predicted gene, 41483
D16Mit179 16 85367403 to 85367541 138 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 179
Cyyr1 16 85452858 to 85550905 98047 - protein coding gene cysteine and tyrosine-rich protein 1
Tssr141902 16 85455123 to 85455127 4 - TSS region transcription start site region 141902
Tssr141903 16 85456775 to 85456786 11 - TSS region transcription start site region 141903
Tssr141904 16 85494348 to 85494350 2 - TSS region transcription start site region 141904
Tssr141905 16 85497270 to 85497274 4 - TSS region transcription start site region 141905