Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 16:84338899-89179376

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418 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Bwtn1 16 20200579 to 85803938 65603359 QTL body weight at necropsy 1
Pod 16 73747957 to 84553438 10805481 QTL plasticity of ocular dominance
Dp(16Hspa13-App)2Yah 16 75755190 to 85173952 9418762 chromosomal duplication duplication, Chr 16, Yann Herault 2
Del(16Hspa13-App)3Yah 16 75755190 to 85173952 9418762 cytogenetic marker deletion, Chr 16, Yann Herault 3
Tssr139144 16 84371130 to 84371151 21 + TSS region transcription start site region 139144
4930553E22Rik 16 84371143 to 84375505 4362 + lincRNA gene RIKEN cDNA 4930553E22 gene
Gm6032 16 84513051 to 84514188 1137 - pseudogene predicted gene 6032
A730009L09Rik 16 84515121 to 84523888 8767 + protein coding gene RIKEN cDNA A730009L09 gene
Tssr139145 16 84557149 to 84557168 19 + TSS region transcription start site region 139145
Gm32073 16 84558301 to 84559361 1060 + lncRNA gene predicted gene, 32073
Tssr141854 16 84583518 to 84583534 16 - TSS region transcription start site region 141854
Cpgi8381 16 84583725 to 84584090 365 CpG island CpG island 8381
Tssr141855 16 84585057 to 84585067 10 - TSS region transcription start site region 141855
Tssr139146 16 84585477 to 84585480 3 + TSS region transcription start site region 139146
Gm2477 16 84598878 to 84601206 2328 - pseudogene predicted gene 2477
Tssr139147 16 84605556 to 84605574 18 + TSS region transcription start site region 139147
Tssr139148 16 84606490 to 84606502 12 + TSS region transcription start site region 139148
Gm25292 16 84619807 to 84620128 321 - unclassified non-coding RNA gene predicted gene, 25292
Tssr141856 16 84621564 to 84621570 6 - TSS region transcription start site region 141856
Tssr139149 16 84640169 to 84640174 5 + TSS region transcription start site region 139149
Gm2349 16 84647373 to 84647992 619 + pseudogene predicted gene 2349
Tssr139150 16 84677599 to 84677604 5 + TSS region transcription start site region 139150
4930529L06Rik 16 84679789 to 84685147 5358 + lncRNA gene RIKEN cDNA 4930529L06 gene
4930551I23Rik 16 84686476 to 84695706 9230 + lincRNA gene RIKEN cDNA 4930551I23 gene
Tssr139151 16 84698920 to 84698964 44 + TSS region transcription start site region 139151
Tssr139152 16 84702046 to 84702052 6 + TSS region transcription start site region 139152
Tssr139153 16 84702163 to 84702182 19 + TSS region transcription start site region 139153
Cpgi8382 16 84702787 to 84703758 971 CpG island CpG island 8382
Tssr139154 16 84703000 to 84703017 17 + TSS region transcription start site region 139154
Tssr139155 16 84703324 to 84703341 17 + TSS region transcription start site region 139155
Tssr139156 16 84703567 to 84703578 11 + TSS region transcription start site region 139156
Tssr139157 16 84703616 to 84703663 47 + TSS region transcription start site region 139157
Tssr139158 16 84703848 to 84703869 21 + TSS region transcription start site region 139158
Tssr141857 16 84704898 to 84704912 14 - TSS region transcription start site region 141857
Tssr139159 16 84705566 to 84705580 14 + TSS region transcription start site region 139159
Tssr139160 16 84705644 to 84705648 4 + TSS region transcription start site region 139160
Tssr139161 16 84705876 to 84705885 9 + TSS region transcription start site region 139161
Tssr139162 16 84708874 to 84708889 15 + TSS region transcription start site region 139162
Tssr139163 16 84709050 to 84709058 8 + TSS region transcription start site region 139163
Tssr139164 16 84709320 to 84709332 12 + TSS region transcription start site region 139164
Tssr139165 16 84709349 to 84709370 21 + TSS region transcription start site region 139165
Tssr139166 16 84709382 to 84709394 12 + TSS region transcription start site region 139166
Tssr139167 16 84709905 to 84709910 5 + TSS region transcription start site region 139167
Tssr139168 16 84710444 to 84710456 12 + TSS region transcription start site region 139168
Tssr139169 16 84710467 to 84710478 11 + TSS region transcription start site region 139169
Tssr139170 16 84710484 to 84710495 11 + TSS region transcription start site region 139170
Tssr139171 16 84710556 to 84710570 14 + TSS region transcription start site region 139171
Tssr139172 16 84711849 to 84711860 11 + TSS region transcription start site region 139172
Mir155hg 16 84713023 to 84715245 2222 + lincRNA gene Mir155 host gene (non-protein coding)
Mir155 16 84714140 to 84714204 64 + miRNA gene microRNA 155
Tssr139173 16 84714202 to 84714206 4 + TSS region transcription start site region 139173
Tssr139174 16 84714985 to 84714988 3 + TSS region transcription start site region 139174
Tssr139175 16 84715073 to 84715087 14 + TSS region transcription start site region 139175
Tssr139176 16 84715609 to 84715620 11 + TSS region transcription start site region 139176
Mrpl39 16 84717576 to 84735742 18166 - protein coding gene mitochondrial ribosomal protein L39
Tssr141858 16 84725160 to 84725173 13 - TSS region transcription start site region 141858
Tssr141859 16 84734507 to 84734529 22 - TSS region transcription start site region 141859
Cpgi8383 16 84734896 to 84735908 1012 CpG island CpG island 8383
Tssr141860 16 84735216 to 84735266 50 - TSS region transcription start site region 141860
Tssr141861 16 84735307 to 84735318 11 - TSS region transcription start site region 141861
Tssr141862 16 84735755 to 84735795 40 - TSS region transcription start site region 141862
Tssr141863 16 84735807 to 84735818 11 - TSS region transcription start site region 141863
Tssr141864 16 84735926 to 84735937 11 - TSS region transcription start site region 141864
Gm26153 16 84737350 to 84737476 126 + snoRNA gene predicted gene, 26153
Gm32202 16 84738550 to 84746022 7472 - lncRNA gene predicted gene, 32202
Tssr141865 16 84745894 to 84745926 32 - TSS region transcription start site region 141865
Tssr141866 16 84772585 to 84772614 29 - TSS region transcription start site region 141866
Tssr139177 16 84773003 to 84773008 5 + TSS region transcription start site region 139177
Tssr139178 16 84773652 to 84773655 3 + TSS region transcription start site region 139178
Tssr139179 16 84773855 to 84773875 20 + TSS region transcription start site region 139179
Tssr139180 16 84773890 to 84773904 14 + TSS region transcription start site region 139180
Cpgi8384 16 84773926 to 84775232 1306 CpG island CpG island 8384
Tssr139181 16 84774086 to 84774093 7 + TSS region transcription start site region 139181
Jam2 16 84774123 to 84825928 51805 + protein coding gene junction adhesion molecule 2
Tssr139182 16 84774136 to 84774145 9 + TSS region transcription start site region 139182
Tssr139183 16 84774163 to 84774174 11 + TSS region transcription start site region 139183
Tssr139184 16 84774175 to 84774197 22 + TSS region transcription start site region 139184
Tssr139185 16 84774229 to 84774238 9 + TSS region transcription start site region 139185
Tssr139186 16 84774263 to 84774294 31 + TSS region transcription start site region 139186
Tssr139187 16 84774301 to 84774314 13 + TSS region transcription start site region 139187
Tssr139188 16 84774321 to 84774332 11 + TSS region transcription start site region 139188
Tssr139189 16 84774361 to 84774423 62 + TSS region transcription start site region 139189
Tssr139190 16 84774428 to 84774439 11 + TSS region transcription start site region 139190
Tssr141867 16 84783490 to 84783492 2 - TSS region transcription start site region 141867
Tssr139191 16 84783718 to 84783723 5 + TSS region transcription start site region 139191
Tssr139192 16 84793546 to 84793556 10 + TSS region transcription start site region 139192
Tssr139193 16 84793560 to 84793574 14 + TSS region transcription start site region 139193
Gm46557 16 84817278 to 84821253 3975 - lncRNA gene predicted gene, 46557
Gm25908 16 84818097 to 84818194 97 + rRNA gene predicted gene, 25908
Atp5j 16 84827871 to 84835625 7754 - protein coding gene ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F
Tssr141868 16 84831786 to 84831799 13 - TSS region transcription start site region 141868
Cpgi8385 16 84834434 to 84836243 1809 CpG island CpG island 8385
Tssr141869 16 84834848 to 84834874 26 - TSS region transcription start site region 141869
Tssr141870 16 84834876 to 84834885 9 - TSS region transcription start site region 141870
Tssr139194 16 84834880 to 84834887 7 + TSS region transcription start site region 139194
Tssr139195 16 84834901 to 84834941 40 + TSS region transcription start site region 139195
Gabpa 16 84834925 to 84863779 28854 + protein coding gene GA repeat binding protein, alpha
Tssr139196 16 84834943 to 84834955 12 + TSS region transcription start site region 139196
Tssr141871 16 84834964 to 84834976 12 - TSS region transcription start site region 141871
Tssr141872 16 84834979 to 84835015 36 - TSS region transcription start site region 141872
Tssr139197 16 84835043 to 84835056 13 + TSS region transcription start site region 139197
Tssr139198 16 84835070 to 84835097 27 + TSS region transcription start site region 139198
Tssr141873 16 84835269 to 84835294 25 - TSS region transcription start site region 141873
Tssr141874 16 84835295 to 84835311 16 - TSS region transcription start site region 141874
Tssr139199 16 84835325 to 84835339 14 + TSS region transcription start site region 139199
Tssr141875 16 84835326 to 84835336 10 - TSS region transcription start site region 141875
Tssr139200 16 84835340 to 84835351 11 + TSS region transcription start site region 139200
Tssr139201 16 84835360 to 84835421 61 + TSS region transcription start site region 139201
Tssr141876 16 84835463 to 84835481 18 - TSS region transcription start site region 141876
Tssr141877 16 84835484 to 84835534 50 - TSS region transcription start site region 141877
Tssr141878 16 84835557 to 84835617 60 - TSS region transcription start site region 141878
Tssr141879 16 84835626 to 84835635 9 - TSS region transcription start site region 141879
Tssr141880 16 84835655 to 84835669 14 - TSS region transcription start site region 141880
Tssr139202 16 84852610 to 84852619 9 + TSS region transcription start site region 139202
Tssr139203 16 84852891 to 84852897 6 + TSS region transcription start site region 139203
Cpgi8386 16 84875147 to 84875326 179 CpG island CpG island 8386
Gm49568 16 84892662 to 84893832 1170 - pseudogene predicted gene, 49568
D16Mit190 16 84911227 to 84911330 103 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 190
App 16 84952666 to 85173952 221286 - protein coding gene amyloid beta (A4) precursor protein
Del(16App-Runx1)5Yah 16 84952666 to 92826074 7873408 chromosomal deletion deletion, Chr 16, Yann Herault 5
Tssr141881 16 84955312 to 84955349 37 - TSS region transcription start site region 141881
Tssr141882 16 84955415 to 84955438 23 - TSS region transcription start site region 141882
Gm10791 16 84972214 to 84979451 7237 + antisense lncRNA gene predicted gene 10791
Tssr141883 16 84977944 to 84977957 13 - TSS region transcription start site region 141883
Tssr141884 16 84977970 to 84977985 15 - TSS region transcription start site region 141884
Gm49228 16 85021622 to 85022017 395 + pseudogene predicted gene, 49228
Tssr141885 16 85024887 to 85024931 44 - TSS region transcription start site region 141885
Tssr141886 16 85034398 to 85034401 3 - TSS region transcription start site region 141886
Tssr141887 16 85044106 to 85044110 4 - TSS region transcription start site region 141887
Tssr139204 16 85056371 to 85056391 20 + TSS region transcription start site region 139204
Tssr139205 16 85056398 to 85056448 50 + TSS region transcription start site region 139205
Tssr141888 16 85056409 to 85056426 17 - TSS region transcription start site region 141888
Tssr139206 16 85072069 to 85072101 32 + TSS region transcription start site region 139206
Cpgi8387 16 85079826 to 85080296 470 CpG island CpG island 8387
Tssr141889 16 85079861 to 85079876 15 - TSS region transcription start site region 141889
Tssr141890 16 85079883 to 85079898 15 - TSS region transcription start site region 141890
Tssr141891 16 85079927 to 85079942 15 - TSS region transcription start site region 141891
Tssr141892 16 85079945 to 85079965 20 - TSS region transcription start site region 141892
Gm49227 16 85080111 to 85083392 3281 + antisense lncRNA gene predicted gene, 49227
Tssr141893 16 85082865 to 85082887 22 - TSS region transcription start site region 141893
Tssr141894 16 85103325 to 85103341 16 - TSS region transcription start site region 141894
Tssr141895 16 85120572 to 85120602 30 - TSS region transcription start site region 141895
Tssr141896 16 85123834 to 85123839 5 - TSS region transcription start site region 141896
Tssr139207 16 85132407 to 85132453 46 + TSS region transcription start site region 139207
Tssr4946 16 85139362 to 85139369 7 - TSS region transcription start site region 4946
Tssr141897 16 85141232 to 85141269 37 - TSS region transcription start site region 141897
Gm49226 16 85148829 to 85155274 6445 + antisense lncRNA gene predicted gene, 49226
Tssr139208 16 85152776 to 85152794 18 + TSS region transcription start site region 139208
Tssr141898 16 85163037 to 85163041 4 - TSS region transcription start site region 141898
Tssr141899 16 85163695 to 85163718 23 - TSS region transcription start site region 141899
Gm27295 16 85168849 to 85169001 152 + snoRNA gene predicted gene, 27295
Cpgi8388 16 85172400 to 85174139 1739 CpG island CpG island 8388
Tssr141900 16 85173692 to 85173718 26 - TSS region transcription start site region 141900
Tssr141901 16 85173729 to 85173747 18 - TSS region transcription start site region 141901
Gm41482 16 85215379 to 85217530 2151 + lncRNA gene predicted gene, 41482
Gm41483 16 85323353 to 85377668 54315 + lncRNA gene predicted gene, 41483
D16Mit179 16 85367403 to 85367541 138 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 179
Cyyr1 16 85452858 to 85550905 98047 - protein coding gene cysteine and tyrosine-rich protein 1
Tssr141902 16 85455123 to 85455127 4 - TSS region transcription start site region 141902
Tssr141903 16 85456775 to 85456786 11 - TSS region transcription start site region 141903
Tssr141904 16 85494348 to 85494350 2 - TSS region transcription start site region 141904
Tssr141905 16 85497270 to 85497274 4 - TSS region transcription start site region 141905
Tssr141906 16 85542582 to 85542590 8 - TSS region transcription start site region 141906
Tssr139209 16 85546997 to 85547007 10 + TSS region transcription start site region 139209
Cpgi8389 16 85550051 to 85550337 286 CpG island CpG island 8389
Tssr141907 16 85550153 to 85550177 24 - TSS region transcription start site region 141907
Tssr4947 16 85550314 to 85550317 3 - TSS region transcription start site region 4947
Tssr141908 16 85550386 to 85550402 16 - TSS region transcription start site region 141908
Tssr141909 16 85550424 to 85550432 8 - TSS region transcription start site region 141909
Gm2541 16 85553236 to 85553943 707 - pseudogene predicted pseudogene 2541
Gm6278 16 85644252 to 85645023 771 + pseudogene predicted gene 6278
Adamts1 16 85793827 to 85803113 9286 - protein coding gene a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 1
Cpgi8390 16 85801239 to 85803474 2235 CpG island CpG island 8390
Tssr141910 16 85801280 to 85801284 4 - TSS region transcription start site region 141910
Tssr141911 16 85803106 to 85803121 15 - TSS region transcription start site region 141911
D16Mit152 16 85803834 to 85803938 104 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 152
Pgia10 16 85803834 to 85803938 104 QTL proteoglycan induced arthritis 10
Tssr141912 16 85803955 to 85803961 6 - TSS region transcription start site region 141912
4930556C24Rik 16 85819211 to 85826769 7558 + lincRNA gene RIKEN cDNA 4930556C24 gene
Tssr139210 16 85819239 to 85819244 5 + TSS region transcription start site region 139210
Tssr139211 16 85819246 to 85819257 11 + TSS region transcription start site region 139211
Adamts5 16 85858157 to 85901125 42968 - protein coding gene a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 5 (aggrecanase-2)
Cpgi8391 16 85899231 to 85900472 1241 CpG island CpG island 8391
Tssr141913 16 85899334 to 85899356 22 - TSS region transcription start site region 141913
Gm46558 16 85899909 to 85905197 5288 + lncRNA gene predicted gene, 46558
Tssr141914 16 85900230 to 85900252 22 - TSS region transcription start site region 141914
Tssr141915 16 85900265 to 85900280 15 - TSS region transcription start site region 141915
Tssr141916 16 85900294 to 85900309 15 - TSS region transcription start site region 141916
Tssr141917 16 85900603 to 85900633 30 - TSS region transcription start site region 141917
Cpgi8392 16 85900631 to 85901310 679 CpG island CpG island 8392
Tssr141918 16 85900681 to 85900691 10 - TSS region transcription start site region 141918
Tssr141919 16 85900719 to 85900745 26 - TSS region transcription start site region 141919
Tssr141920 16 85901056 to 85901071 15 - TSS region transcription start site region 141920
Tssr141921 16 85901118 to 85901133 15 - TSS region transcription start site region 141921
Tssr141922 16 85901347 to 85901362 15 - TSS region transcription start site region 141922
Tssr141923 16 85901792 to 85901828 36 - TSS region transcription start site region 141923
Gm49570 16 86015455 to 86015857 402 + pseudogene predicted gene, 49570
Tssr139212 16 86044973 to 86044984 11 + TSS region transcription start site region 139212
1700007H22Rik 16 86139304 to 86150676 11372 - lincRNA gene RIKEN cDNA 1700007H22 gene
D16Mit70 16 86209075 to 86209261 186 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 70