Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 16:84238051-84789188

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85 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Pod 16 73747957 to 84553438 10805481 QTL plasticity of ocular dominance
Gm7295 16 84246311 to 84247696 1385 + pseudogene predicted gene 7295
Gm24508 16 84294535 to 84294641 106 + snRNA gene predicted gene, 24508
Tssr139143 16 84301745 to 84301766 21 + TSS region transcription start site region 139143
Tssr139144 16 84371130 to 84371151 21 + TSS region transcription start site region 139144
4930553E22Rik 16 84371143 to 84375505 4362 + lincRNA gene RIKEN cDNA 4930553E22 gene
Gm6032 16 84513051 to 84514188 1137 - pseudogene predicted gene 6032
A730009L09Rik 16 84515121 to 84523888 8767 + protein coding gene RIKEN cDNA A730009L09 gene
Tssr139145 16 84557149 to 84557168 19 + TSS region transcription start site region 139145
Gm32073 16 84558301 to 84559361 1060 + lncRNA gene predicted gene, 32073
Tssr141854 16 84583518 to 84583534 16 - TSS region transcription start site region 141854
Cpgi8381 16 84583725 to 84584090 365 CpG island CpG island 8381
Tssr141855 16 84585057 to 84585067 10 - TSS region transcription start site region 141855
Tssr139146 16 84585477 to 84585480 3 + TSS region transcription start site region 139146
Gm2477 16 84598878 to 84601206 2328 - pseudogene predicted gene 2477
Tssr139147 16 84605556 to 84605574 18 + TSS region transcription start site region 139147
Tssr139148 16 84606490 to 84606502 12 + TSS region transcription start site region 139148
Gm25292 16 84619807 to 84620128 321 - unclassified non-coding RNA gene predicted gene, 25292
Tssr141856 16 84621564 to 84621570 6 - TSS region transcription start site region 141856
Tssr139149 16 84640169 to 84640174 5 + TSS region transcription start site region 139149
Gm2349 16 84647373 to 84647992 619 + pseudogene predicted gene 2349
Tssr139150 16 84677599 to 84677604 5 + TSS region transcription start site region 139150
4930529L06Rik 16 84679789 to 84685147 5358 + lncRNA gene RIKEN cDNA 4930529L06 gene
4930551I23Rik 16 84686476 to 84695706 9230 + lincRNA gene RIKEN cDNA 4930551I23 gene
Tssr139151 16 84698920 to 84698964 44 + TSS region transcription start site region 139151
Tssr139152 16 84702046 to 84702052 6 + TSS region transcription start site region 139152
Tssr139153 16 84702163 to 84702182 19 + TSS region transcription start site region 139153
Cpgi8382 16 84702787 to 84703758 971 CpG island CpG island 8382
Tssr139154 16 84703000 to 84703017 17 + TSS region transcription start site region 139154
Tssr139155 16 84703324 to 84703341 17 + TSS region transcription start site region 139155
Tssr139156 16 84703567 to 84703578 11 + TSS region transcription start site region 139156
Tssr139157 16 84703616 to 84703663 47 + TSS region transcription start site region 139157
Tssr139158 16 84703848 to 84703869 21 + TSS region transcription start site region 139158
Tssr141857 16 84704898 to 84704912 14 - TSS region transcription start site region 141857
Tssr139159 16 84705566 to 84705580 14 + TSS region transcription start site region 139159
Tssr139160 16 84705644 to 84705648 4 + TSS region transcription start site region 139160
Tssr139161 16 84705876 to 84705885 9 + TSS region transcription start site region 139161
Tssr139162 16 84708874 to 84708889 15 + TSS region transcription start site region 139162
Tssr139163 16 84709050 to 84709058 8 + TSS region transcription start site region 139163
Tssr139164 16 84709320 to 84709332 12 + TSS region transcription start site region 139164
Tssr139165 16 84709349 to 84709370 21 + TSS region transcription start site region 139165
Tssr139166 16 84709382 to 84709394 12 + TSS region transcription start site region 139166
Tssr139167 16 84709905 to 84709910 5 + TSS region transcription start site region 139167
Tssr139168 16 84710444 to 84710456 12 + TSS region transcription start site region 139168
Tssr139169 16 84710467 to 84710478 11 + TSS region transcription start site region 139169
Tssr139170 16 84710484 to 84710495 11 + TSS region transcription start site region 139170
Tssr139171 16 84710556 to 84710570 14 + TSS region transcription start site region 139171
Tssr139172 16 84711849 to 84711860 11 + TSS region transcription start site region 139172
Mir155hg 16 84713023 to 84715245 2222 + lincRNA gene Mir155 host gene (non-protein coding)
Mir155 16 84714140 to 84714204 64 + miRNA gene microRNA 155
Tssr139173 16 84714202 to 84714206 4 + TSS region transcription start site region 139173
Tssr139174 16 84714985 to 84714988 3 + TSS region transcription start site region 139174
Tssr139175 16 84715073 to 84715087 14 + TSS region transcription start site region 139175
Tssr139176 16 84715609 to 84715620 11 + TSS region transcription start site region 139176
Mrpl39 16 84717576 to 84735742 18166 - protein coding gene mitochondrial ribosomal protein L39
Tssr141858 16 84725160 to 84725173 13 - TSS region transcription start site region 141858
Tssr141859 16 84734507 to 84734529 22 - TSS region transcription start site region 141859
Cpgi8383 16 84734896 to 84735908 1012 CpG island CpG island 8383
Tssr141860 16 84735216 to 84735266 50 - TSS region transcription start site region 141860
Tssr141861 16 84735307 to 84735318 11 - TSS region transcription start site region 141861
Tssr141862 16 84735755 to 84735795 40 - TSS region transcription start site region 141862
Tssr141863 16 84735807 to 84735818 11 - TSS region transcription start site region 141863
Tssr141864 16 84735926 to 84735937 11 - TSS region transcription start site region 141864
Gm26153 16 84737350 to 84737476 126 + snoRNA gene predicted gene, 26153
Gm32202 16 84738550 to 84746022 7472 - lncRNA gene predicted gene, 32202
Tssr141865 16 84745894 to 84745926 32 - TSS region transcription start site region 141865
Tssr141866 16 84772585 to 84772614 29 - TSS region transcription start site region 141866
Tssr139177 16 84773003 to 84773008 5 + TSS region transcription start site region 139177
Tssr139178 16 84773652 to 84773655 3 + TSS region transcription start site region 139178
Tssr139179 16 84773855 to 84773875 20 + TSS region transcription start site region 139179
Tssr139180 16 84773890 to 84773904 14 + TSS region transcription start site region 139180
Cpgi8384 16 84773926 to 84775232 1306 CpG island CpG island 8384
Tssr139181 16 84774086 to 84774093 7 + TSS region transcription start site region 139181
Jam2 16 84774123 to 84825928 51805 + protein coding gene junction adhesion molecule 2
Tssr139182 16 84774136 to 84774145 9 + TSS region transcription start site region 139182
Tssr139183 16 84774163 to 84774174 11 + TSS region transcription start site region 139183
Tssr139184 16 84774175 to 84774197 22 + TSS region transcription start site region 139184
Tssr139185 16 84774229 to 84774238 9 + TSS region transcription start site region 139185
Tssr139186 16 84774263 to 84774294 31 + TSS region transcription start site region 139186
Tssr139187 16 84774301 to 84774314 13 + TSS region transcription start site region 139187
Tssr139188 16 84774321 to 84774332 11 + TSS region transcription start site region 139188
Tssr139189 16 84774361 to 84774423 62 + TSS region transcription start site region 139189
Tssr139190 16 84774428 to 84774439 11 + TSS region transcription start site region 139190
Tssr141867 16 84783490 to 84783492 2 - TSS region transcription start site region 141867
Tssr139191 16 84783718 to 84783723 5 + TSS region transcription start site region 139191