Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 16:84085467-85335478

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159 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Pod 16 73747957 to 84553438 10805481 QTL plasticity of ocular dominance
Dp(16Hspa13-App)2Yah 16 75755190 to 85173952 9418762 chromosomal duplication duplication, Chr 16, Yann Herault 2
Del(16Hspa13-App)3Yah 16 75755190 to 85173952 9418762 cytogenetic marker deletion, Chr 16, Yann Herault 3
Gm49562 16 84219285 to 84219687 402 - pseudogene predicted gene, 49562
Gm7295 16 84246311 to 84247696 1385 + pseudogene predicted gene 7295
Gm24508 16 84294535 to 84294641 106 + snRNA gene predicted gene, 24508
Tssr139143 16 84301745 to 84301766 21 + TSS region transcription start site region 139143
Tssr139144 16 84371130 to 84371151 21 + TSS region transcription start site region 139144
4930553E22Rik 16 84371143 to 84375505 4362 + lincRNA gene RIKEN cDNA 4930553E22 gene
Gm6032 16 84513051 to 84514188 1137 - pseudogene predicted gene 6032
A730009L09Rik 16 84515121 to 84523888 8767 + protein coding gene RIKEN cDNA A730009L09 gene
Tssr139145 16 84557149 to 84557168 19 + TSS region transcription start site region 139145
Gm32073 16 84558301 to 84559361 1060 + lncRNA gene predicted gene, 32073
Tssr141854 16 84583518 to 84583534 16 - TSS region transcription start site region 141854
Cpgi8381 16 84583725 to 84584090 365 CpG island CpG island 8381
Tssr141855 16 84585057 to 84585067 10 - TSS region transcription start site region 141855
Tssr139146 16 84585477 to 84585480 3 + TSS region transcription start site region 139146
Gm2477 16 84598878 to 84601206 2328 - pseudogene predicted gene 2477
Tssr139147 16 84605556 to 84605574 18 + TSS region transcription start site region 139147
Tssr139148 16 84606490 to 84606502 12 + TSS region transcription start site region 139148
Gm25292 16 84619807 to 84620128 321 - unclassified non-coding RNA gene predicted gene, 25292
Tssr141856 16 84621564 to 84621570 6 - TSS region transcription start site region 141856
Tssr139149 16 84640169 to 84640174 5 + TSS region transcription start site region 139149
Gm2349 16 84647373 to 84647992 619 + pseudogene predicted gene 2349
Tssr139150 16 84677599 to 84677604 5 + TSS region transcription start site region 139150
4930529L06Rik 16 84679789 to 84685147 5358 + lncRNA gene RIKEN cDNA 4930529L06 gene
4930551I23Rik 16 84686476 to 84695706 9230 + lincRNA gene RIKEN cDNA 4930551I23 gene
Tssr139151 16 84698920 to 84698964 44 + TSS region transcription start site region 139151
Tssr139152 16 84702046 to 84702052 6 + TSS region transcription start site region 139152
Tssr139153 16 84702163 to 84702182 19 + TSS region transcription start site region 139153
Cpgi8382 16 84702787 to 84703758 971 CpG island CpG island 8382
Tssr139154 16 84703000 to 84703017 17 + TSS region transcription start site region 139154
Tssr139155 16 84703324 to 84703341 17 + TSS region transcription start site region 139155
Tssr139156 16 84703567 to 84703578 11 + TSS region transcription start site region 139156
Tssr139157 16 84703616 to 84703663 47 + TSS region transcription start site region 139157
Tssr139158 16 84703848 to 84703869 21 + TSS region transcription start site region 139158
Tssr141857 16 84704898 to 84704912 14 - TSS region transcription start site region 141857
Tssr139159 16 84705566 to 84705580 14 + TSS region transcription start site region 139159
Tssr139160 16 84705644 to 84705648 4 + TSS region transcription start site region 139160
Tssr139161 16 84705876 to 84705885 9 + TSS region transcription start site region 139161
Tssr139162 16 84708874 to 84708889 15 + TSS region transcription start site region 139162
Tssr139163 16 84709050 to 84709058 8 + TSS region transcription start site region 139163
Tssr139164 16 84709320 to 84709332 12 + TSS region transcription start site region 139164
Tssr139165 16 84709349 to 84709370 21 + TSS region transcription start site region 139165
Tssr139166 16 84709382 to 84709394 12 + TSS region transcription start site region 139166
Tssr139167 16 84709905 to 84709910 5 + TSS region transcription start site region 139167
Tssr139168 16 84710444 to 84710456 12 + TSS region transcription start site region 139168
Tssr139169 16 84710467 to 84710478 11 + TSS region transcription start site region 139169
Tssr139170 16 84710484 to 84710495 11 + TSS region transcription start site region 139170
Tssr139171 16 84710556 to 84710570 14 + TSS region transcription start site region 139171
Tssr139172 16 84711849 to 84711860 11 + TSS region transcription start site region 139172
Mir155hg 16 84713023 to 84715245 2222 + lincRNA gene Mir155 host gene (non-protein coding)
Mir155 16 84714140 to 84714204 64 + miRNA gene microRNA 155
Tssr139173 16 84714202 to 84714206 4 + TSS region transcription start site region 139173
Tssr139174 16 84714985 to 84714988 3 + TSS region transcription start site region 139174
Tssr139175 16 84715073 to 84715087 14 + TSS region transcription start site region 139175
Tssr139176 16 84715609 to 84715620 11 + TSS region transcription start site region 139176
Mrpl39 16 84717576 to 84735742 18166 - protein coding gene mitochondrial ribosomal protein L39
Tssr141858 16 84725160 to 84725173 13 - TSS region transcription start site region 141858
Tssr141859 16 84734507 to 84734529 22 - TSS region transcription start site region 141859
Cpgi8383 16 84734896 to 84735908 1012 CpG island CpG island 8383
Tssr141860 16 84735216 to 84735266 50 - TSS region transcription start site region 141860
Tssr141861 16 84735307 to 84735318 11 - TSS region transcription start site region 141861
Tssr141862 16 84735755 to 84735795 40 - TSS region transcription start site region 141862
Tssr141863 16 84735807 to 84735818 11 - TSS region transcription start site region 141863
Tssr141864 16 84735926 to 84735937 11 - TSS region transcription start site region 141864
Gm26153 16 84737350 to 84737476 126 + snoRNA gene predicted gene, 26153
Gm32202 16 84738550 to 84746022 7472 - lncRNA gene predicted gene, 32202
Tssr141865 16 84745894 to 84745926 32 - TSS region transcription start site region 141865
Tssr141866 16 84772585 to 84772614 29 - TSS region transcription start site region 141866
Tssr139177 16 84773003 to 84773008 5 + TSS region transcription start site region 139177
Tssr139178 16 84773652 to 84773655 3 + TSS region transcription start site region 139178
Tssr139179 16 84773855 to 84773875 20 + TSS region transcription start site region 139179
Tssr139180 16 84773890 to 84773904 14 + TSS region transcription start site region 139180
Cpgi8384 16 84773926 to 84775232 1306 CpG island CpG island 8384
Tssr139181 16 84774086 to 84774093 7 + TSS region transcription start site region 139181
Jam2 16 84774123 to 84825928 51805 + protein coding gene junction adhesion molecule 2
Tssr139182 16 84774136 to 84774145 9 + TSS region transcription start site region 139182
Tssr139183 16 84774163 to 84774174 11 + TSS region transcription start site region 139183
Tssr139184 16 84774175 to 84774197 22 + TSS region transcription start site region 139184
Tssr139185 16 84774229 to 84774238 9 + TSS region transcription start site region 139185
Tssr139186 16 84774263 to 84774294 31 + TSS region transcription start site region 139186
Tssr139187 16 84774301 to 84774314 13 + TSS region transcription start site region 139187
Tssr139188 16 84774321 to 84774332 11 + TSS region transcription start site region 139188
Tssr139189 16 84774361 to 84774423 62 + TSS region transcription start site region 139189
Tssr139190 16 84774428 to 84774439 11 + TSS region transcription start site region 139190
Tssr141867 16 84783490 to 84783492 2 - TSS region transcription start site region 141867
Tssr139191 16 84783718 to 84783723 5 + TSS region transcription start site region 139191
Tssr139192 16 84793546 to 84793556 10 + TSS region transcription start site region 139192
Tssr139193 16 84793560 to 84793574 14 + TSS region transcription start site region 139193
Gm46557 16 84817278 to 84821253 3975 - lncRNA gene predicted gene, 46557
Gm25908 16 84818097 to 84818194 97 + rRNA gene predicted gene, 25908
Atp5j 16 84827871 to 84835625 7754 - protein coding gene ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F
Tssr141868 16 84831786 to 84831799 13 - TSS region transcription start site region 141868
Cpgi8385 16 84834434 to 84836243 1809 CpG island CpG island 8385
Tssr141869 16 84834848 to 84834874 26 - TSS region transcription start site region 141869
Tssr141870 16 84834876 to 84834885 9 - TSS region transcription start site region 141870
Tssr139194 16 84834880 to 84834887 7 + TSS region transcription start site region 139194
Tssr139195 16 84834901 to 84834941 40 + TSS region transcription start site region 139195
Gabpa 16 84834925 to 84863779 28854 + protein coding gene GA repeat binding protein, alpha
Tssr139196 16 84834943 to 84834955 12 + TSS region transcription start site region 139196
Tssr141871 16 84834964 to 84834976 12 - TSS region transcription start site region 141871
Tssr141872 16 84834979 to 84835015 36 - TSS region transcription start site region 141872
Tssr139197 16 84835043 to 84835056 13 + TSS region transcription start site region 139197
Tssr139198 16 84835070 to 84835097 27 + TSS region transcription start site region 139198
Tssr141873 16 84835269 to 84835294 25 - TSS region transcription start site region 141873
Tssr141874 16 84835295 to 84835311 16 - TSS region transcription start site region 141874
Tssr139199 16 84835325 to 84835339 14 + TSS region transcription start site region 139199
Tssr141875 16 84835326 to 84835336 10 - TSS region transcription start site region 141875
Tssr139200 16 84835340 to 84835351 11 + TSS region transcription start site region 139200
Tssr139201 16 84835360 to 84835421 61 + TSS region transcription start site region 139201
Tssr141876 16 84835463 to 84835481 18 - TSS region transcription start site region 141876
Tssr141877 16 84835484 to 84835534 50 - TSS region transcription start site region 141877
Tssr141878 16 84835557 to 84835617 60 - TSS region transcription start site region 141878
Tssr141879 16 84835626 to 84835635 9 - TSS region transcription start site region 141879
Tssr141880 16 84835655 to 84835669 14 - TSS region transcription start site region 141880
Tssr139202 16 84852610 to 84852619 9 + TSS region transcription start site region 139202
Tssr139203 16 84852891 to 84852897 6 + TSS region transcription start site region 139203
Cpgi8386 16 84875147 to 84875326 179 CpG island CpG island 8386
Gm49568 16 84892662 to 84893832 1170 - pseudogene predicted gene, 49568
D16Mit190 16 84911227 to 84911330 103 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 190
Del(16App-Runx1)5Yah 16 84952666 to 92826074 7873408 chromosomal deletion deletion, Chr 16, Yann Herault 5
App 16 84952666 to 85173952 221286 - protein coding gene amyloid beta (A4) precursor protein
Tssr141881 16 84955312 to 84955349 37 - TSS region transcription start site region 141881
Tssr141882 16 84955415 to 84955438 23 - TSS region transcription start site region 141882
Gm10791 16 84972214 to 84979451 7237 + antisense lncRNA gene predicted gene 10791
Tssr141883 16 84977944 to 84977957 13 - TSS region transcription start site region 141883
Tssr141884 16 84977970 to 84977985 15 - TSS region transcription start site region 141884
Gm49228 16 85021622 to 85022017 395 + pseudogene predicted gene, 49228
Tssr141885 16 85024887 to 85024931 44 - TSS region transcription start site region 141885
Tssr141886 16 85034398 to 85034401 3 - TSS region transcription start site region 141886
Tssr141887 16 85044106 to 85044110 4 - TSS region transcription start site region 141887
Tssr139204 16 85056371 to 85056391 20 + TSS region transcription start site region 139204
Tssr139205 16 85056398 to 85056448 50 + TSS region transcription start site region 139205
Tssr141888 16 85056409 to 85056426 17 - TSS region transcription start site region 141888
Tssr139206 16 85072069 to 85072101 32 + TSS region transcription start site region 139206
Cpgi8387 16 85079826 to 85080296 470 CpG island CpG island 8387
Tssr141889 16 85079861 to 85079876 15 - TSS region transcription start site region 141889
Tssr141890 16 85079883 to 85079898 15 - TSS region transcription start site region 141890
Tssr141891 16 85079927 to 85079942 15 - TSS region transcription start site region 141891
Tssr141892 16 85079945 to 85079965 20 - TSS region transcription start site region 141892
Gm49227 16 85080111 to 85083392 3281 + antisense lncRNA gene predicted gene, 49227
Tssr141893 16 85082865 to 85082887 22 - TSS region transcription start site region 141893
Tssr141894 16 85103325 to 85103341 16 - TSS region transcription start site region 141894
Tssr141895 16 85120572 to 85120602 30 - TSS region transcription start site region 141895
Tssr141896 16 85123834 to 85123839 5 - TSS region transcription start site region 141896
Tssr139207 16 85132407 to 85132453 46 + TSS region transcription start site region 139207
Tssr4946 16 85139362 to 85139369 7 - TSS region transcription start site region 4946
Tssr141897 16 85141232 to 85141269 37 - TSS region transcription start site region 141897
Gm49226 16 85148829 to 85155274 6445 + antisense lncRNA gene predicted gene, 49226
Tssr139208 16 85152776 to 85152794 18 + TSS region transcription start site region 139208
Tssr141898 16 85163037 to 85163041 4 - TSS region transcription start site region 141898
Tssr141899 16 85163695 to 85163718 23 - TSS region transcription start site region 141899
Gm27295 16 85168849 to 85169001 152 + snoRNA gene predicted gene, 27295
Cpgi8388 16 85172400 to 85174139 1739 CpG island CpG island 8388
Tssr141900 16 85173692 to 85173718 26 - TSS region transcription start site region 141900
Tssr141901 16 85173729 to 85173747 18 - TSS region transcription start site region 141901
Gm41482 16 85215379 to 85217530 2151 + lncRNA gene predicted gene, 41482
Gm41483 16 85323353 to 85377668 54315 + lncRNA gene predicted gene, 41483