Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 16:77422786-78832881

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125 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Eae41 16 40578772 to 78218584 37639812 QTL experimental allergic encephalomyelitis susceptibility 41
Mir99ahg 16 77329328 to 77558428 229100 + lncRNA gene Mir99a and Mirlet7c-1 host gene (non-protein coding)
Tssr139077 16 77422915 to 77422948 33 + TSS region transcription start site region 139077
D16Mit78a 16 77426759 to 77426974 215 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 78a
D16Mit78b 16 77426829 to 77426974 145 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 78b
Tssr139078 16 77432837 to 77432841 4 + TSS region transcription start site region 139078
Tssr139079 16 77448478 to 77448505 27 + TSS region transcription start site region 139079
Tssr139080 16 77466038 to 77466058 20 + TSS region transcription start site region 139080
Tssr139081 16 77466075 to 77466101 26 + TSS region transcription start site region 139081
Tssr139082 16 77466125 to 77466150 25 + TSS region transcription start site region 139082
D130020G16Rik 16 77468112 to 77470814 2702 unclassified gene RIKEN cDNA D130020G16 gene
Gm37063 16 77476934 to 77480453 3519 + unclassified gene predicted gene, 37063
Tssr139083 16 77483568 to 77483591 23 + TSS region transcription start site region 139083
Tssr139084 16 77484944 to 77484983 39 + TSS region transcription start site region 139084
Gm37241 16 77486046 to 77486568 522 + unclassified gene predicted gene, 37241
Tssr139085 16 77487807 to 77487815 8 + TSS region transcription start site region 139085
Tssr139086 16 77497519 to 77497548 29 + TSS region transcription start site region 139086
Tssr139087 16 77497651 to 77497680 29 + TSS region transcription start site region 139087
Tssr139088 16 77500006 to 77500035 29 + TSS region transcription start site region 139088
Tssr139089 16 77500168 to 77500199 31 + TSS region transcription start site region 139089
Tssr139090 16 77500210 to 77500232 22 + TSS region transcription start site region 139090
Tssr139091 16 77500542 to 77500563 21 + TSS region transcription start site region 139091
Tssr139092 16 77501274 to 77501295 21 + TSS region transcription start site region 139092
Tssr139093 16 77530741 to 77530772 31 + TSS region transcription start site region 139093
Gm36963 16 77539882 to 77542205 2323 + unclassified gene predicted gene, 36963
Tssr139094 16 77545838 to 77545841 3 + TSS region transcription start site region 139094
Gm37606 16 77561650 to 77564765 3115 + unclassified gene predicted gene, 37606
Gm11146 16 77588578 to 77602094 13516 - protein coding gene predicted gene 11146
Tssr139095 16 77594062 to 77594076 14 + TSS region transcription start site region 139095
Tssr139096 16 77594191 to 77594213 22 + TSS region transcription start site region 139096
Tssr139097 16 77594784 to 77594797 13 + TSS region transcription start site region 139097
Tssr139098 16 77598027 to 77598038 11 + TSS region transcription start site region 139098
Tssr139099 16 77598108 to 77598130 22 + TSS region transcription start site region 139099
Tssr139100 16 77598161 to 77598179 18 + TSS region transcription start site region 139100
Tssr139101 16 77598323 to 77598344 21 + TSS region transcription start site region 139101
Mir99a 16 77598936 to 77599000 64 + miRNA gene microRNA 99a
Mirlet7c-1 16 77599657 to 77599750 93 + miRNA gene microRNA let7c-1
Tssr139102 16 77599739 to 77599744 5 + TSS region transcription start site region 139102
Tssr139103 16 77601599 to 77601617 18 + TSS region transcription start site region 139103
Gm37311 16 77616311 to 77618334 2023 + unclassified gene predicted gene, 37311
Tssr139104 16 77625482 to 77625487 5 + TSS region transcription start site region 139104
Tssr139105 16 77626359 to 77626377 18 + TSS region transcription start site region 139105
8030498J20Rik 16 77633875 to 77637848 3973 unclassified gene RIKEN cDNA 8030498J20 gene
Tssr139106 16 77637062 to 77637077 15 + TSS region transcription start site region 139106
Tssr139107 16 77642906 to 77642915 9 + TSS region transcription start site region 139107
Tssr139108 16 77643008 to 77643022 14 + TSS region transcription start site region 139108
Cpgi8374 16 77644383 to 77644752 369 CpG island CpG island 8374
Mir125b-2 16 77646273 to 77646343 70 + miRNA gene microRNA 125b-2
Tssr139109 16 77646338 to 77646342 4 + TSS region transcription start site region 139109
C130023A14Rik 16 77646340 to 77649426 3086 + unclassified gene RIKEN cDNA C130023A14 gene
Tssr139110 16 77651957 to 77651981 24 + TSS region transcription start site region 139110
Tssr139111 16 77653708 to 77653714 6 + TSS region transcription start site region 139111
9530003O04Rik 16 77654531 to 77655438 907 + unclassified gene RIKEN cDNA 9530003O04 gene
Tssr139112 16 77658428 to 77658444 16 + TSS region transcription start site region 139112
Tssr139113 16 77670245 to 77670248 3 + TSS region transcription start site region 139113
Tssr139114 16 77674602 to 77674628 26 + TSS region transcription start site region 139114
Gm37694 16 77685277 to 77687409 2132 + unclassified gene predicted gene, 37694
Tssr139115 16 77838143 to 77838147 4 + TSS region transcription start site region 139115
Gm17333 16 77846604 to 77853084 6480 + lincRNA gene predicted gene, 17333
D16Ium71 16 77981015 to 77981159 144 DNA segment DNA segment, Chr 16, Indiana University Medical 71
Gm49589 16 77993014 to 77993155 141 + pseudogene predicted gene, 49589
Gm31431 16 78035491 to 78089711 54220 - lncRNA gene predicted gene, 31431
Gm25025 16 78050717 to 78050827 110 + miRNA gene predicted gene, 25025
Gm5675 16 78117100 to 78118125 1025 + pseudogene predicted gene 5675
Gm31495 16 78120239 to 78154940 34701 - lncRNA gene predicted gene, 31495
D16Dcr7 16 78127786 to 78127881 95 DNA segment DNA Segment, Chr 16, Derry C. Roopenian 7
D16Dcr8 16 78183052 to 78183149 97 DNA segment DNA Segment, Chr 16, Derry C. Roopenian 8
Cpgi8375 16 78198782 to 78199028 246 CpG island CpG island 8375
Tssr139116 16 78217157 to 78217188 31 + TSS region transcription start site region 139116
D16Mit49 16 78218438 to 78218584 146 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 49
Tssr139117 16 78222602 to 78222634 32 + TSS region transcription start site region 139117
Gm31613 16 78222624 to 78238942 16318 + lncRNA gene predicted gene, 31613
Gm41477 16 78229686 to 78236481 6795 - lncRNA gene predicted gene, 41477
Gm25916 16 78240258 to 78240388 130 + snoRNA gene predicted gene, 25916
E330011O21Rik 16 78250861 to 78255454 4593 - lncRNA gene RIKEN cDNA E330011O21 gene
Gm49591 16 78251053 to 78251577 524 + pseudogene predicted gene, 49591
Tssr141834 16 78265949 to 78265980 31 - TSS region transcription start site region 141834
Tssr141835 16 78267831 to 78267838 7 - TSS region transcription start site region 141835
Cpgi8376 16 78301248 to 78302434 1186 CpG island CpG island 8376
Tssr139118 16 78301458 to 78301481 23 + TSS region transcription start site region 139118
Cxadr 16 78301489 to 78359774 58285 + protein coding gene coxsackie virus and adenovirus receptor
Tssr139119 16 78301673 to 78301760 87 + TSS region transcription start site region 139119
Tssr139120 16 78301775 to 78301804 29 + TSS region transcription start site region 139120
Tssr139121 16 78302544 to 78302548 4 + TSS region transcription start site region 139121
Tssr139122 16 78309540 to 78309551 11 + TSS region transcription start site region 139122
Tssr139123 16 78309552 to 78309564 12 + TSS region transcription start site region 139123
Gm49590 16 78340756 to 78343468 2712 - unclassified gene predicted gene, 49590
Tssr141836 16 78357307 to 78357325 18 - TSS region transcription start site region 141836
Btg3 16 78359860 to 78377181 17321 - protein coding gene B cell translocation gene 3
Tssr141837 16 78375019 to 78375029 10 - TSS region transcription start site region 141837
Cpgi8377 16 78375866 to 78377389 1523 CpG island CpG island 8377
Tssr139124 16 78376117 to 78376122 5 + TSS region transcription start site region 139124
Tssr141838 16 78376758 to 78376818 60 - TSS region transcription start site region 141838
Tssr141839 16 78410174 to 78410190 16 - TSS region transcription start site region 141839
Gm25038 16 78423730 to 78423859 129 - snoRNA gene predicted gene, 25038
D16Ertd534e 16 78432118 to 78432355 237 DNA segment DNA segment, Chr 16, ERATO Doi 534, expressed
Tssr139125 16 78440169 to 78440177 8 + TSS region transcription start site region 139125
1700015P03Rik 16 78449309 to 78450122 813 unclassified gene RIKEN cDNA 1700015P03 gene
4930572P05Rik 16 78454710 to 78455328 618 unclassified gene RIKEN cDNA 4930572P05 gene
Gm49603 16 78477742 to 78480539 2797 - unclassified gene predicted gene, 49603
Gm49604 16 78489680 to 78492955 3275 + unclassified gene predicted gene, 49604
D16Ertd472e 16 78540336 to 78576688 36352 - protein coding gene DNA segment, Chr 16, ERATO Doi 472, expressed
Tssr141840 16 78546642 to 78546667 25 - TSS region transcription start site region 141840
Tssr141841 16 78559549 to 78559552 3 - TSS region transcription start site region 141841
4930478L05Rik 16 78560316 to 78564869 4553 + antisense lncRNA gene RIKEN cDNA 4930478L05 gene
Cpgi8378 16 78575892 to 78577061 1169 CpG island CpG island 8378
Tssr141842 16 78576347 to 78576397 50 - TSS region transcription start site region 141842
Tssr141843 16 78576595 to 78576618 23 - TSS region transcription start site region 141843
Tssr141844 16 78576622 to 78576645 23 - TSS region transcription start site region 141844
Tssr141845 16 78576649 to 78576666 17 - TSS region transcription start site region 141845
Tssr141846 16 78576682 to 78576696 14 - TSS region transcription start site region 141846
Tssr141847 16 78576799 to 78576806 7 - TSS region transcription start site region 141847
Tssr141848 16 78577023 to 78577035 12 - TSS region transcription start site region 141848
Tssr141849 16 78577178 to 78577193 15 - TSS region transcription start site region 141849
Tssr141850 16 78577203 to 78577219 16 - TSS region transcription start site region 141850
Gm24861 16 78624747 to 78624853 106 + snRNA gene predicted gene, 24861
Tssr139126 16 78694985 to 78694991 6 + TSS region transcription start site region 139126
Tssr139127 16 78695006 to 78695017 11 + TSS region transcription start site region 139127
Tssr139128 16 78695022 to 78695036 14 + TSS region transcription start site region 139128
4930570E03Rik 16 78695034 to 78709083 14049 + lincRNA gene RIKEN cDNA 4930570E03 gene
D16Ium49 16 78696272 to 78696518 246 DNA segment DNA segment, Chr 16, Indiana University Medical 49
Tssr139129 16 78707271 to 78707274 3 + TSS region transcription start site region 139129
4930403O18Rik 16 78757733 to 78758984 1251 + unclassified gene RIKEN cDNA 4930403O18 gene
Sluc27 16 78811756 to 78811876 120 QTL susceptibility to lung cancer 27
D16Mit19 16 78811756 to 78811876 120 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 19