Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 16:76466647-78376658

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178 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Eae41 16 40578772 to 78218584 37639812 QTL experimental allergic encephalomyelitis susceptibility 41
Del(16Lipi-Usp25)1Dja 16 75540514 to 77116779 1576265 chromosomal deletion deletion, Chr 16, David J Adams 1
Gm45030 16 76427743 to 76502909 75166 - lincRNA gene predicted gene 45030
Gm30615 16 76454625 to 76471287 16662 - lncRNA gene predicted gene, 30615
Tssr139021 16 76500250 to 76500263 13 + TSS region transcription start site region 139021
Tssr139022 16 76548743 to 76548785 42 + TSS region transcription start site region 139022
Gm30726 16 76548798 to 76550857 2059 + lincRNA gene predicted gene, 30726
D16Mit176 16 76576433 to 76576550 117 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 176
Gm45029 16 76680513 to 76741443 60930 + lincRNA gene predicted gene 45029
Gm30790 16 76751793 to 76779092 27299 - lincRNA gene predicted gene, 30790
Tssr139023 16 76814520 to 76814524 4 + TSS region transcription start site region 139023
D16Mit188 16 76817593 to 76817716 123 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 188
1700063K16Rik 16 76821293 to 76821741 448 - pseudogene RIKEN cDNA 1700063K16 gene
Tssr139024 16 76824770 to 76824772 2 + TSS region transcription start site region 139024
Tssr139025 16 76926207 to 76926216 9 + TSS region transcription start site region 139025
Gm7501 16 76941616 to 76942183 567 + pseudogene predicted gene 7501
1700041M19Rik 16 77004228 to 77010881 6653 - lincRNA gene RIKEN cDNA 1700041M19 gene
Tssr141825 16 77010869 to 77010888 19 - TSS region transcription start site region 141825
Cpgi8373 16 77013310 to 77014442 1132 CpG island CpG island 8373
Tssr139026 16 77013700 to 77013775 75 + TSS region transcription start site region 139026
Usp25 16 77013706 to 77116780 103074 + protein coding gene ubiquitin specific peptidase 25
Tssr139027 16 77013777 to 77013788 11 + TSS region transcription start site region 139027
Tssr139028 16 77013810 to 77013817 7 + TSS region transcription start site region 139028
Tssr139029 16 77026597 to 77026628 31 + TSS region transcription start site region 139029
Tssr139030 16 77037396 to 77037414 18 + TSS region transcription start site region 139030
Tssr139031 16 77071688 to 77071708 20 + TSS region transcription start site region 139031
Tssr139032 16 77071739 to 77071756 17 + TSS region transcription start site region 139032
Tssr139033 16 77074851 to 77074873 22 + TSS region transcription start site region 139033
Tssr139034 16 77077121 to 77077132 11 + TSS region transcription start site region 139034
Tssr139035 16 77077179 to 77077197 18 + TSS region transcription start site region 139035
Tssr139036 16 77085475 to 77085479 4 + TSS region transcription start site region 139036
Tssr139037 16 77093614 to 77093628 14 + TSS region transcription start site region 139037
Tssr139038 16 77111622 to 77111636 14 + TSS region transcription start site region 139038
Tssr139039 16 77115618 to 77115631 13 + TSS region transcription start site region 139039
Tssr139040 16 77115885 to 77115899 14 + TSS region transcription start site region 139040
Tssr139041 16 77124255 to 77124260 5 + TSS region transcription start site region 139041
Tssr139042 16 77236313 to 77236326 13 + TSS region transcription start site region 139042
Tssr139043 16 77247222 to 77247228 6 + TSS region transcription start site region 139043
Tssr139044 16 77261778 to 77261782 4 + TSS region transcription start site region 139044
Tssr139045 16 77301984 to 77301992 8 + TSS region transcription start site region 139045
Tssr139046 16 77302011 to 77302051 40 + TSS region transcription start site region 139046
Gm31258 16 77302264 to 77305560 3296 - lncRNA gene predicted gene, 31258
Tssr139047 16 77329195 to 77329245 50 + TSS region transcription start site region 139047
Tssr139048 16 77329246 to 77329353 107 + TSS region transcription start site region 139048
Mir99ahg 16 77329328 to 77558428 229100 + lncRNA gene Mir99a and Mirlet7c-1 host gene (non-protein coding)
Tssr139049 16 77329357 to 77329377 20 + TSS region transcription start site region 139049
Tssr139050 16 77329498 to 77329509 11 + TSS region transcription start site region 139050
Tssr139051 16 77329511 to 77329525 14 + TSS region transcription start site region 139051
Tssr141826 16 77329525 to 77329551 26 - TSS region transcription start site region 141826
Tssr139052 16 77329542 to 77329553 11 + TSS region transcription start site region 139052
Tssr139053 16 77329571 to 77329619 48 + TSS region transcription start site region 139053
Tssr139054 16 77329629 to 77329656 27 + TSS region transcription start site region 139054
Tssr139055 16 77338298 to 77338314 16 + TSS region transcription start site region 139055
Tssr139056 16 77340571 to 77340604 33 + TSS region transcription start site region 139056
Tssr139057 16 77340653 to 77340669 16 + TSS region transcription start site region 139057
Tssr139058 16 77351695 to 77351706 11 + TSS region transcription start site region 139058
Tssr139059 16 77351750 to 77351752 2 + TSS region transcription start site region 139059
D16Mit217 16 77361208 to 77361426 218 DNA segment DNA Segment, Chr 16 Massachusetts Institute of Technology 217
Tssr139060 16 77361518 to 77361526 8 + TSS region transcription start site region 139060
Tssr139061 16 77362441 to 77362459 18 + TSS region transcription start site region 139061
Tssr139062 16 77368376 to 77368397 21 + TSS region transcription start site region 139062
Tssr139063 16 77368876 to 77368902 26 + TSS region transcription start site region 139063
Tssr139064 16 77371582 to 77371612 30 + TSS region transcription start site region 139064
Tssr139065 16 77374705 to 77374730 25 + TSS region transcription start site region 139065
Tssr139066 16 77375327 to 77375365 38 + TSS region transcription start site region 139066
D16Ium70 16 77380766 to 77380954 188 DNA segment DNA segment, Chr 16, Indiana University Medical 70
Gm37466 16 77381950 to 77382601 651 + unclassified gene predicted gene, 37466
Tssr139067 16 77387915 to 77387932 17 + TSS region transcription start site region 139067
Tssr139068 16 77389922 to 77389938 16 + TSS region transcription start site region 139068
Tssr139069 16 77389972 to 77389984 12 + TSS region transcription start site region 139069
Tssr139070 16 77399951 to 77399964 13 + TSS region transcription start site region 139070
Gm21816 16 77400030 to 77403135 3105 + pseudogene predicted gene, 21816
9430092D12Rik 16 77413643 to 77414916 1273 + unclassified gene RIKEN cDNA 9430092D12 gene
Gm38071 16 77416624 to 77420001 3377 + unclassified gene predicted gene, 38071
Tssr139071 16 77417606 to 77417645 39 + TSS region transcription start site region 139071
9430053O09Rik 16 77419251 to 77421820 2569 - lncRNA gene RIKEN cDNA 9430053O09 gene
Tssr139072 16 77419745 to 77419759 14 + TSS region transcription start site region 139072
Tssr139073 16 77419845 to 77419849 4 + TSS region transcription start site region 139073
Tssr141827 16 77420279 to 77420308 29 - TSS region transcription start site region 141827
Tssr141828 16 77421590 to 77421606 16 - TSS region transcription start site region 141828
Tssr139074 16 77421623 to 77421637 14 + TSS region transcription start site region 139074
Tssr139075 16 77421647 to 77421658 11 + TSS region transcription start site region 139075
Tssr141829 16 77421669 to 77421684 15 - TSS region transcription start site region 141829
Tssr139076 16 77421722 to 77421737 15 + TSS region transcription start site region 139076
Tssr141830 16 77421731 to 77421743 12 - TSS region transcription start site region 141830
Tssr141831 16 77421786 to 77421797 11 - TSS region transcription start site region 141831
Tssr141832 16 77421887 to 77421911 24 - TSS region transcription start site region 141832
Tssr141833 16 77421968 to 77422015 47 - TSS region transcription start site region 141833
Tssr139077 16 77422915 to 77422948 33 + TSS region transcription start site region 139077
D16Mit78a 16 77426759 to 77426974 215 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 78a
D16Mit78b 16 77426829 to 77426974 145 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 78b
Tssr139078 16 77432837 to 77432841 4 + TSS region transcription start site region 139078
Tssr139079 16 77448478 to 77448505 27 + TSS region transcription start site region 139079
Tssr139080 16 77466038 to 77466058 20 + TSS region transcription start site region 139080
Tssr139081 16 77466075 to 77466101 26 + TSS region transcription start site region 139081
Tssr139082 16 77466125 to 77466150 25 + TSS region transcription start site region 139082
D130020G16Rik 16 77468112 to 77470814 2702 unclassified gene RIKEN cDNA D130020G16 gene
Gm37063 16 77476934 to 77480453 3519 + unclassified gene predicted gene, 37063
Tssr139083 16 77483568 to 77483591 23 + TSS region transcription start site region 139083
Tssr139084 16 77484944 to 77484983 39 + TSS region transcription start site region 139084
Gm37241 16 77486046 to 77486568 522 + unclassified gene predicted gene, 37241
Tssr139085 16 77487807 to 77487815 8 + TSS region transcription start site region 139085
Tssr139086 16 77497519 to 77497548 29 + TSS region transcription start site region 139086
Tssr139087 16 77497651 to 77497680 29 + TSS region transcription start site region 139087
Tssr139088 16 77500006 to 77500035 29 + TSS region transcription start site region 139088
Tssr139089 16 77500168 to 77500199 31 + TSS region transcription start site region 139089
Tssr139090 16 77500210 to 77500232 22 + TSS region transcription start site region 139090
Tssr139091 16 77500542 to 77500563 21 + TSS region transcription start site region 139091
Tssr139092 16 77501274 to 77501295 21 + TSS region transcription start site region 139092
Tssr139093 16 77530741 to 77530772 31 + TSS region transcription start site region 139093
Gm36963 16 77539882 to 77542205 2323 + unclassified gene predicted gene, 36963
Tssr139094 16 77545838 to 77545841 3 + TSS region transcription start site region 139094
Gm37606 16 77561650 to 77564765 3115 + unclassified gene predicted gene, 37606
Gm11146 16 77588578 to 77602094 13516 - protein coding gene predicted gene 11146
Tssr139095 16 77594062 to 77594076 14 + TSS region transcription start site region 139095
Tssr139096 16 77594191 to 77594213 22 + TSS region transcription start site region 139096
Tssr139097 16 77594784 to 77594797 13 + TSS region transcription start site region 139097
Tssr139098 16 77598027 to 77598038 11 + TSS region transcription start site region 139098
Tssr139099 16 77598108 to 77598130 22 + TSS region transcription start site region 139099
Tssr139100 16 77598161 to 77598179 18 + TSS region transcription start site region 139100
Tssr139101 16 77598323 to 77598344 21 + TSS region transcription start site region 139101
Mir99a 16 77598936 to 77599000 64 + miRNA gene microRNA 99a
Mirlet7c-1 16 77599657 to 77599750 93 + miRNA gene microRNA let7c-1
Tssr139102 16 77599739 to 77599744 5 + TSS region transcription start site region 139102
Tssr139103 16 77601599 to 77601617 18 + TSS region transcription start site region 139103
Gm37311 16 77616311 to 77618334 2023 + unclassified gene predicted gene, 37311
Tssr139104 16 77625482 to 77625487 5 + TSS region transcription start site region 139104
Tssr139105 16 77626359 to 77626377 18 + TSS region transcription start site region 139105
8030498J20Rik 16 77633875 to 77637848 3973 unclassified gene RIKEN cDNA 8030498J20 gene
Tssr139106 16 77637062 to 77637077 15 + TSS region transcription start site region 139106
Tssr139107 16 77642906 to 77642915 9 + TSS region transcription start site region 139107
Tssr139108 16 77643008 to 77643022 14 + TSS region transcription start site region 139108
Cpgi8374 16 77644383 to 77644752 369 CpG island CpG island 8374
Mir125b-2 16 77646273 to 77646343 70 + miRNA gene microRNA 125b-2
Tssr139109 16 77646338 to 77646342 4 + TSS region transcription start site region 139109
C130023A14Rik 16 77646340 to 77649426 3086 + unclassified gene RIKEN cDNA C130023A14 gene
Tssr139110 16 77651957 to 77651981 24 + TSS region transcription start site region 139110
Tssr139111 16 77653708 to 77653714 6 + TSS region transcription start site region 139111
9530003O04Rik 16 77654531 to 77655438 907 + unclassified gene RIKEN cDNA 9530003O04 gene
Tssr139112 16 77658428 to 77658444 16 + TSS region transcription start site region 139112
Tssr139113 16 77670245 to 77670248 3 + TSS region transcription start site region 139113
Tssr139114 16 77674602 to 77674628 26 + TSS region transcription start site region 139114
Gm37694 16 77685277 to 77687409 2132 + unclassified gene predicted gene, 37694
Tssr139115 16 77838143 to 77838147 4 + TSS region transcription start site region 139115
Gm17333 16 77846604 to 77853084 6480 + lincRNA gene predicted gene, 17333
D16Ium71 16 77981015 to 77981159 144 DNA segment DNA segment, Chr 16, Indiana University Medical 71
Gm49589 16 77993014 to 77993155 141 + pseudogene predicted gene, 49589
Gm31431 16 78035491 to 78089711 54220 - lncRNA gene predicted gene, 31431
Gm25025 16 78050717 to 78050827 110 + miRNA gene predicted gene, 25025
Gm5675 16 78117100 to 78118125 1025 + pseudogene predicted gene 5675
Gm31495 16 78120239 to 78154940 34701 - lncRNA gene predicted gene, 31495
D16Dcr7 16 78127786 to 78127881 95 DNA segment DNA Segment, Chr 16, Derry C. Roopenian 7
D16Dcr8 16 78183052 to 78183149 97 DNA segment DNA Segment, Chr 16, Derry C. Roopenian 8
Cpgi8375 16 78198782 to 78199028 246 CpG island CpG island 8375
Tssr139116 16 78217157 to 78217188 31 + TSS region transcription start site region 139116
D16Mit49 16 78218438 to 78218584 146 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 49
Tssr139117 16 78222602 to 78222634 32 + TSS region transcription start site region 139117
Gm31613 16 78222624 to 78238942 16318 + lncRNA gene predicted gene, 31613
Gm41477 16 78229686 to 78236481 6795 - lncRNA gene predicted gene, 41477
Gm25916 16 78240258 to 78240388 130 + snoRNA gene predicted gene, 25916
E330011O21Rik 16 78250861 to 78255454 4593 - lncRNA gene RIKEN cDNA E330011O21 gene
Gm49591 16 78251053 to 78251577 524 + pseudogene predicted gene, 49591
Tssr141834 16 78265949 to 78265980 31 - TSS region transcription start site region 141834
Tssr141835 16 78267831 to 78267838 7 - TSS region transcription start site region 141835
Cpgi8376 16 78301248 to 78302434 1186 CpG island CpG island 8376
Tssr139118 16 78301458 to 78301481 23 + TSS region transcription start site region 139118
Cxadr 16 78301489 to 78359774 58285 + protein coding gene coxsackie virus and adenovirus receptor
Tssr139119 16 78301673 to 78301760 87 + TSS region transcription start site region 139119
Tssr139120 16 78301775 to 78301804 29 + TSS region transcription start site region 139120
Tssr139121 16 78302544 to 78302548 4 + TSS region transcription start site region 139121
Tssr139122 16 78309540 to 78309551 11 + TSS region transcription start site region 139122
Tssr139123 16 78309552 to 78309564 12 + TSS region transcription start site region 139123
Gm49590 16 78340756 to 78343468 2712 - unclassified gene predicted gene, 49590
Tssr141836 16 78357307 to 78357325 18 - TSS region transcription start site region 141836
Btg3 16 78359860 to 78377181 17321 - protein coding gene B cell translocation gene 3
Tssr141837 16 78375019 to 78375029 10 - TSS region transcription start site region 141837
Cpgi8377 16 78375866 to 78377389 1523 CpG island CpG island 8377
Tssr139124 16 78376117 to 78376122 5 + TSS region transcription start site region 139124