Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 16:75897743-77032909

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73 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Samsn1 16 75858794 to 75909266 50472 - protein coding gene SAM domain, SH3 domain and nuclear localization signals, 1
Tssr141803 16 75905513 to 75905516 3 - TSS region transcription start site region 141803
Tssr141804 16 75906845 to 75906860 15 - TSS region transcription start site region 141804
Tssr139010 16 75907021 to 75907030 9 + TSS region transcription start site region 139010
Tssr139011 16 75907042 to 75907074 32 + TSS region transcription start site region 139011
Tssr139012 16 75907106 to 75907139 33 + TSS region transcription start site region 139012
Tssr4940 16 75909147 to 75909151 4 - TSS region transcription start site region 4940
Tssr4941 16 75909172 to 75909182 10 - TSS region transcription start site region 4941
Tssr4942 16 75909188 to 75909203 15 - TSS region transcription start site region 4942
Tssr141805 16 75909230 to 75909247 17 - TSS region transcription start site region 141805
Tssr141806 16 75909249 to 75909254 5 - TSS region transcription start site region 141806
Tssr141807 16 75909272 to 75909301 29 - TSS region transcription start site region 141807
Tssr4943 16 75909323 to 75909335 12 - TSS region transcription start site region 4943
Gm15555 16 76000784 to 76034602 33818 + antisense lncRNA gene predicted gene 15555
Tssr141808 16 76022266 to 76022287 21 - TSS region transcription start site region 141808
Tssr141809 16 76022299 to 76022315 16 - TSS region transcription start site region 141809
Tssr141810 16 76093982 to 76093996 14 - TSS region transcription start site region 141810
Tssr139013 16 76122607 to 76122629 22 + TSS region transcription start site region 139013
4930578N18Rik 16 76122613 to 76156086 33473 + lincRNA gene RIKEN cDNA 4930578N18 gene
Tssr4944 16 76132460 to 76132463 3 + TSS region transcription start site region 4944
Gm22268 16 76132541 to 76132671 130 - snoRNA gene predicted gene, 22268
Gm41476 16 76136826 to 76139734 2908 - protein coding gene predicted gene, 41476
Gm26915 16 76144985 to 76145732 747 + pseudogene predicted gene, 26915
Gm30507 16 76186962 to 76249591 62629 - lncRNA gene predicted gene, 30507
Tssr141811 16 76226594 to 76226607 13 - TSS region transcription start site region 141811
Tssr141812 16 76249458 to 76249467 9 - TSS region transcription start site region 141812
Nrip1 16 76287400 to 76373827 86427 - protein coding gene nuclear receptor interacting protein 1
Cpgi8371 16 76292860 to 76293740 880 CpG island CpG island 8371
Tssr139014 16 76294100 to 76294108 8 + TSS region transcription start site region 139014
Gm30569 16 76295151 to 76312385 17234 + lncRNA gene predicted gene, 30569
Tssr141813 16 76318609 to 76318618 9 - TSS region transcription start site region 141813
Tssr141814 16 76324786 to 76324792 6 - TSS region transcription start site region 141814
Tssr141815 16 76337040 to 76337077 37 - TSS region transcription start site region 141815
Tssr139015 16 76337248 to 76337259 11 + TSS region transcription start site region 139015
Tssr141816 16 76339285 to 76339312 27 - TSS region transcription start site region 141816
Tssr139016 16 76342011 to 76342015 4 + TSS region transcription start site region 139016
Tssr141817 16 76347950 to 76347954 4 - TSS region transcription start site region 141817
Tssr141818 16 76359720 to 76359723 3 - TSS region transcription start site region 141818
Tssr141819 16 76365118 to 76365122 4 - TSS region transcription start site region 141819
Cpgi8372 16 76372005 to 76373814 1809 CpG island CpG island 8372
Tssr141820 16 76373014 to 76373103 89 - TSS region transcription start site region 141820
Tssr139017 16 76373097 to 76373107 10 + TSS region transcription start site region 139017
Tssr139018 16 76373193 to 76373213 20 + TSS region transcription start site region 139018
Tssr141821 16 76373839 to 76373852 13 - TSS region transcription start site region 141821
Tssr141822 16 76373854 to 76373871 17 - TSS region transcription start site region 141822
Tssr141823 16 76373872 to 76373886 14 - TSS region transcription start site region 141823
Gm49587 16 76383107 to 76398126 15019 + lincRNA gene predicted gene, 49587
Gm9843 16 76403251 to 76403652 401 - pseudogene predicted gene 9843
Tssr139019 16 76403325 to 76403378 53 + TSS region transcription start site region 139019
Tssr139020 16 76403415 to 76403431 16 + TSS region transcription start site region 139020
Tssr141824 16 76403673 to 76403717 44 - TSS region transcription start site region 141824
Gm45030 16 76427743 to 76502909 75166 - lincRNA gene predicted gene 45030
Gm30615 16 76454625 to 76471287 16662 - lncRNA gene predicted gene, 30615
Tssr139021 16 76500250 to 76500263 13 + TSS region transcription start site region 139021
Tssr139022 16 76548743 to 76548785 42 + TSS region transcription start site region 139022
Gm30726 16 76548798 to 76550857 2059 + lincRNA gene predicted gene, 30726
D16Mit176 16 76576433 to 76576550 117 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 176
Gm45029 16 76680513 to 76741443 60930 + lincRNA gene predicted gene 45029
Gm30790 16 76751793 to 76779092 27299 - lincRNA gene predicted gene, 30790
Tssr139023 16 76814520 to 76814524 4 + TSS region transcription start site region 139023
D16Mit188 16 76817593 to 76817716 123 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 188
1700063K16Rik 16 76821293 to 76821741 448 - pseudogene RIKEN cDNA 1700063K16 gene
Tssr139024 16 76824770 to 76824772 2 + TSS region transcription start site region 139024
Tssr139025 16 76926207 to 76926216 9 + TSS region transcription start site region 139025
Gm7501 16 76941616 to 76942183 567 + pseudogene predicted gene 7501
1700041M19Rik 16 77004228 to 77010881 6653 - lincRNA gene RIKEN cDNA 1700041M19 gene
Tssr141825 16 77010869 to 77010888 19 - TSS region transcription start site region 141825
Cpgi8373 16 77013310 to 77014442 1132 CpG island CpG island 8373
Tssr139026 16 77013700 to 77013775 75 + TSS region transcription start site region 139026
Usp25 16 77013706 to 77116780 103074 + protein coding gene ubiquitin specific peptidase 25
Tssr139027 16 77013777 to 77013788 11 + TSS region transcription start site region 139027
Tssr139028 16 77013810 to 77013817 7 + TSS region transcription start site region 139028
Tssr139029 16 77026597 to 77026628 31 + TSS region transcription start site region 139029