Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 16:73738982-78448996

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362 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Eae41 16 40578772 to 78218584 37639812 QTL experimental allergic encephalomyelitis susceptibility 41
Pod 16 73747957 to 84553438 10805481 QTL plasticity of ocular dominance
Tssr4938 16 73794140 to 73794141 1 - TSS region transcription start site region 4938
D16Mit175 16 73881878 to 73881980 102 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 175
Robo2 16 73891839 to 74411825 519986 - protein coding gene roundabout guidance receptor 2
Tssr141724 16 73913096 to 73913098 2 - TSS region transcription start site region 141724
Tssr141725 16 73958357 to 73958368 11 - TSS region transcription start site region 141725
Tssr141726 16 73958385 to 73958406 21 - TSS region transcription start site region 141726
Tssr141727 16 73958408 to 73958411 3 - TSS region transcription start site region 141727
Gm24272 16 73974441 to 73974538 97 + miRNA gene predicted gene, 24272
Tssr141728 16 74053003 to 74053007 4 - TSS region transcription start site region 141728
Gm22163 16 74058899 to 74059033 134 - snoRNA gene predicted gene, 22163
Gm49660 16 74062050 to 74065853 3803 - unclassified gene predicted gene, 49660
2510042H03Rik 16 74167221 to 74167988 767 unclassified gene RIKEN cDNA 2510042H03 gene
Gm49659 16 74176793 to 74178834 2041 - unclassified gene predicted gene, 49659
Gm49658 16 74188831 to 74192499 3668 - unclassified gene predicted gene, 49658
D16Ium57 16 74242148 to 74242380 232 DNA segment DNA segment, Chr 16, Indiana University Medical 57
Gm18021 16 74248927 to 74249731 804 + pseudogene predicted gene, 18021
Tssr141729 16 74279195 to 74279206 11 - TSS region transcription start site region 141729
Tssr141730 16 74279314 to 74279353 39 - TSS region transcription start site region 141730
Tssr141731 16 74279415 to 74279454 39 - TSS region transcription start site region 141731
Tssr141732 16 74279456 to 74279470 14 - TSS region transcription start site region 141732
Tssr141733 16 74279637 to 74279643 6 - TSS region transcription start site region 141733
Tssr141734 16 74279737 to 74279741 4 - TSS region transcription start site region 141734
Tssr141735 16 74301391 to 74301396 5 - TSS region transcription start site region 141735
Tssr141736 16 74303685 to 74303688 3 - TSS region transcription start site region 141736
Tssr4939 16 74306528 to 74306537 9 - TSS region transcription start site region 4939
Mir691 16 74341990 to 74342067 77 - miRNA gene microRNA 691
Cpgi8368 16 74411344 to 74412225 881 CpG island CpG island 8368
Tssr141737 16 74411415 to 74411430 15 - TSS region transcription start site region 141737
Tssr141738 16 74411444 to 74411451 7 - TSS region transcription start site region 141738
Tssr141739 16 74411507 to 74411543 36 - TSS region transcription start site region 141739
Tssr141740 16 74411567 to 74411628 61 - TSS region transcription start site region 141740
Tssr141741 16 74411718 to 74411731 13 - TSS region transcription start site region 141741
Tssr141742 16 74411776 to 74411792 16 - TSS region transcription start site region 141742
Tssr141743 16 74411801 to 74411806 5 - TSS region transcription start site region 141743
Tssr141744 16 74411807 to 74411832 25 - TSS region transcription start site region 141744
Tssr141745 16 74411866 to 74411880 14 - TSS region transcription start site region 141745
Tssr141746 16 74412116 to 74412131 15 - TSS region transcription start site region 141746
Tssr141747 16 74502586 to 74502588 2 - TSS region transcription start site region 141747
Gm49671 16 74606262 to 74606561 299 + pseudogene predicted gene, 49671
Gm26307 16 74607757 to 74607882 125 + snoRNA gene predicted gene, 26307
Tssr139000 16 74620031 to 74620039 8 + TSS region transcription start site region 139000
Tssr139001 16 74620040 to 74620050 10 + TSS region transcription start site region 139001
Tssr139002 16 74620059 to 74620069 10 + TSS region transcription start site region 139002
Tssr141748 16 74621230 to 74621236 6 - TSS region transcription start site region 141748
Tssr141749 16 74644231 to 74644237 6 - TSS region transcription start site region 141749
Tssr141750 16 74672469 to 74672480 11 - TSS region transcription start site region 141750
Tssr141751 16 74730959 to 74730963 4 - TSS region transcription start site region 141751
Tssr141752 16 74731379 to 74731381 2 - TSS region transcription start site region 141752
Tssr141753 16 74736248 to 74736253 5 - TSS region transcription start site region 141753
Tssr141754 16 74754645 to 74754649 4 - TSS region transcription start site region 141754
Tssr141755 16 74760649 to 74760660 11 - TSS region transcription start site region 141755
Tssr141756 16 74760711 to 74760725 14 - TSS region transcription start site region 141756
Tssr139003 16 74804961 to 74804965 4 + TSS region transcription start site region 139003
Tssr141757 16 74815197 to 74815206 9 - TSS region transcription start site region 141757
Tssr141758 16 74826734 to 74826750 16 - TSS region transcription start site region 141758
Tssr141759 16 74826801 to 74826813 12 - TSS region transcription start site region 141759
Tssr139004 16 74828357 to 74828359 2 + TSS region transcription start site region 139004
Tssr141760 16 74828845 to 74828850 5 - TSS region transcription start site region 141760
Tssr141761 16 74867090 to 74867099 9 - TSS region transcription start site region 141761
Gm49674 16 74873039 to 74875938 2899 - unclassified gene predicted gene, 49674
Tssr141762 16 74879449 to 74879452 3 - TSS region transcription start site region 141762
Tssr141763 16 74925850 to 74925857 7 - TSS region transcription start site region 141763
Tssr141764 16 74961139 to 74961143 4 - TSS region transcription start site region 141764
Gm26937 16 74961240 to 74962247 1007 + pseudogene predicted gene, 26937
E130102B10Rik 16 75010698 to 75011089 391 unclassified gene RIKEN cDNA E130102B10 gene
Tssr141765 16 75016103 to 75016116 13 - TSS region transcription start site region 141765
Tssr141766 16 75016141 to 75016161 20 - TSS region transcription start site region 141766
Tssr141767 16 75016165 to 75016186 21 - TSS region transcription start site region 141767
Tssr141768 16 75016425 to 75016434 9 - TSS region transcription start site region 141768
A630036G19Rik 16 75030852 to 75034931 4079 - unclassified gene RIKEN cDNA A630036G19 gene
Tssr141769 16 75047400 to 75047437 37 - TSS region transcription start site region 141769
Tssr141770 16 75047767 to 75047781 14 - TSS region transcription start site region 141770
Tssr141771 16 75047791 to 75047802 11 - TSS region transcription start site region 141771
Tssr141772 16 75047828 to 75047834 6 - TSS region transcription start site region 141772
Tssr141773 16 75052190 to 75052196 6 - TSS region transcription start site region 141773
Tssr141774 16 75053723 to 75053727 4 - TSS region transcription start site region 141774
D16Mit93 16 75066542 to 75066649 107 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 93
Tssr141775 16 75092427 to 75092430 3 - TSS region transcription start site region 141775
Tssr141776 16 75092533 to 75092552 19 - TSS region transcription start site region 141776
Tssr141777 16 75092563 to 75092604 41 - TSS region transcription start site region 141777
Tssr141778 16 75092696 to 75092706 10 - TSS region transcription start site region 141778
Tssr141779 16 75092708 to 75092734 26 - TSS region transcription start site region 141779
Tssr141780 16 75092754 to 75092773 19 - TSS region transcription start site region 141780
Tssr141781 16 75092817 to 75092843 26 - TSS region transcription start site region 141781
Tssr141782 16 75092920 to 75092931 11 - TSS region transcription start site region 141782
Tssr141783 16 75092974 to 75092997 23 - TSS region transcription start site region 141783
Tssr141784 16 75093082 to 75093096 14 - TSS region transcription start site region 141784
Tssr141785 16 75130116 to 75130119 3 - TSS region transcription start site region 141785
Tssr141786 16 75141901 to 75141904 3 - TSS region transcription start site region 141786
Gm49676 16 75147233 to 75147829 596 + pseudogene predicted gene, 49676
Tssr141787 16 75187183 to 75187187 4 - TSS region transcription start site region 141787
Tssr141788 16 75240161 to 75240170 9 - TSS region transcription start site region 141788
Tssr141789 16 75284838 to 75284845 7 - TSS region transcription start site region 141789
Tssr141790 16 75292346 to 75292359 13 - TSS region transcription start site region 141790
Tssr141791 16 75304388 to 75304391 3 - TSS region transcription start site region 141791
Tssr141792 16 75307975 to 75307979 4 - TSS region transcription start site region 141792
Gm30116 16 75382734 to 75389835 7101 - lncRNA gene predicted gene, 30116
Tssr141793 16 75383701 to 75383705 4 - TSS region transcription start site region 141793
Gm49678 16 75388544 to 75447293 58749 - lincRNA gene predicted gene, 49678
Gm49677 16 75395598 to 75399274 3676 - unclassified gene predicted gene, 49677
Tssr141794 16 75399737 to 75399746 9 - TSS region transcription start site region 141794
n-TIaat1 16 75434179 to 75434252 73 + tRNA gene nuclear encoded tRNA isoleucine 1 (anticodon AAT)
Tssr141795 16 75447107 to 75447116 9 - TSS region transcription start site region 141795
Tssr141796 16 75447186 to 75447214 28 - TSS region transcription start site region 141796
Del(16Lipi-Usp25)1Dja 16 75540514 to 77116779 1576265 chromosomal deletion deletion, Chr 16, David J Adams 1
Lipi 16 75540514 to 75586061 45547 - protein coding gene lipase, member I
Tssr141797 16 75586017 to 75586037 20 - TSS region transcription start site region 141797
Cpgi8369 16 75592692 to 75593333 641 CpG island CpG island 8369
Rbm11 16 75592844 to 75602825 9981 + protein coding gene RNA binding motif protein 11
Tssr139005 16 75592901 to 75592928 27 + TSS region transcription start site region 139005
Tssr139006 16 75592938 to 75592965 27 + TSS region transcription start site region 139006
Gm41474 16 75645638 to 75683274 37636 - lncRNA gene predicted gene, 41474
Gm30162 16 75659356 to 75701091 41735 + lincRNA gene predicted gene, 30162
Tssr139007 16 75659363 to 75659380 17 + TSS region transcription start site region 139007
Tssr141798 16 75683279 to 75683310 31 - TSS region transcription start site region 141798
Gm15553 16 75746207 to 75746468 261 - pseudogene predicted gene 15553
Hspa13 16 75755190 to 75767277 12087 - protein coding gene heat shock protein 70 family, member 13
Dp(16Hspa13-App)2Yah 16 75755190 to 85173952 9418762 chromosomal duplication duplication, Chr 16, Yann Herault 2
Del(16Hspa13-App)3Yah 16 75755190 to 85173952 9418762 cytogenetic marker deletion, Chr 16, Yann Herault 3
Gm22923 16 75764322 to 75764431 109 + miRNA gene predicted gene, 22923
Cpgi8370 16 75766365 to 75767009 644 CpG island CpG island 8370
Tssr141799 16 75766758 to 75766797 39 - TSS region transcription start site region 141799
Tssr141800 16 75767073 to 75767075 2 - TSS region transcription start site region 141800
Gm15554 16 75772163 to 75773057 894 - pseudogene predicted gene 15554
Tssr139008 16 75855712 to 75855729 17 + TSS region transcription start site region 139008
Samsn1 16 75858794 to 75909266 50472 - protein coding gene SAM domain, SH3 domain and nuclear localization signals, 1
Tssr139009 16 75859402 to 75859418 16 + TSS region transcription start site region 139009
Tssr141801 16 75870801 to 75870814 13 - TSS region transcription start site region 141801
Tssr141802 16 75876477 to 75876489 12 - TSS region transcription start site region 141802
Tssr141803 16 75905513 to 75905516 3 - TSS region transcription start site region 141803
Tssr141804 16 75906845 to 75906860 15 - TSS region transcription start site region 141804
Tssr139010 16 75907021 to 75907030 9 + TSS region transcription start site region 139010
Tssr139011 16 75907042 to 75907074 32 + TSS region transcription start site region 139011
Tssr139012 16 75907106 to 75907139 33 + TSS region transcription start site region 139012
Tssr4940 16 75909147 to 75909151 4 - TSS region transcription start site region 4940
Tssr4941 16 75909172 to 75909182 10 - TSS region transcription start site region 4941
Tssr4942 16 75909188 to 75909203 15 - TSS region transcription start site region 4942
Tssr141805 16 75909230 to 75909247 17 - TSS region transcription start site region 141805
Tssr141806 16 75909249 to 75909254 5 - TSS region transcription start site region 141806
Tssr141807 16 75909272 to 75909301 29 - TSS region transcription start site region 141807
Tssr4943 16 75909323 to 75909335 12 - TSS region transcription start site region 4943
Gm15555 16 76000784 to 76034602 33818 + antisense lncRNA gene predicted gene 15555
Tssr141808 16 76022266 to 76022287 21 - TSS region transcription start site region 141808
Tssr141809 16 76022299 to 76022315 16 - TSS region transcription start site region 141809
Tssr141810 16 76093982 to 76093996 14 - TSS region transcription start site region 141810
Tssr139013 16 76122607 to 76122629 22 + TSS region transcription start site region 139013
4930578N18Rik 16 76122613 to 76156086 33473 + lincRNA gene RIKEN cDNA 4930578N18 gene
Tssr4944 16 76132460 to 76132463 3 + TSS region transcription start site region 4944
Gm22268 16 76132541 to 76132671 130 - snoRNA gene predicted gene, 22268
Gm41476 16 76136826 to 76139734 2908 - protein coding gene predicted gene, 41476
Gm26915 16 76144985 to 76145732 747 + pseudogene predicted gene, 26915
Gm30507 16 76186962 to 76249591 62629 - lncRNA gene predicted gene, 30507
Tssr141811 16 76226594 to 76226607 13 - TSS region transcription start site region 141811
Tssr141812 16 76249458 to 76249467 9 - TSS region transcription start site region 141812
Nrip1 16 76287400 to 76373827 86427 - protein coding gene nuclear receptor interacting protein 1
Cpgi8371 16 76292860 to 76293740 880 CpG island CpG island 8371
Tssr139014 16 76294100 to 76294108 8 + TSS region transcription start site region 139014
Gm30569 16 76295151 to 76312385 17234 + lncRNA gene predicted gene, 30569
Tssr141813 16 76318609 to 76318618 9 - TSS region transcription start site region 141813
Tssr141814 16 76324786 to 76324792 6 - TSS region transcription start site region 141814
Tssr141815 16 76337040 to 76337077 37 - TSS region transcription start site region 141815
Tssr139015 16 76337248 to 76337259 11 + TSS region transcription start site region 139015
Tssr141816 16 76339285 to 76339312 27 - TSS region transcription start site region 141816
Tssr139016 16 76342011 to 76342015 4 + TSS region transcription start site region 139016
Tssr141817 16 76347950 to 76347954 4 - TSS region transcription start site region 141817
Tssr141818 16 76359720 to 76359723 3 - TSS region transcription start site region 141818
Tssr141819 16 76365118 to 76365122 4 - TSS region transcription start site region 141819
Cpgi8372 16 76372005 to 76373814 1809 CpG island CpG island 8372
Tssr141820 16 76373014 to 76373103 89 - TSS region transcription start site region 141820
Tssr139017 16 76373097 to 76373107 10 + TSS region transcription start site region 139017
Tssr139018 16 76373193 to 76373213 20 + TSS region transcription start site region 139018
Tssr141821 16 76373839 to 76373852 13 - TSS region transcription start site region 141821
Tssr141822 16 76373854 to 76373871 17 - TSS region transcription start site region 141822
Tssr141823 16 76373872 to 76373886 14 - TSS region transcription start site region 141823
Gm49587 16 76383107 to 76398126 15019 + lincRNA gene predicted gene, 49587
Gm9843 16 76403251 to 76403652 401 - pseudogene predicted gene 9843
Tssr139019 16 76403325 to 76403378 53 + TSS region transcription start site region 139019
Tssr139020 16 76403415 to 76403431 16 + TSS region transcription start site region 139020
Tssr141824 16 76403673 to 76403717 44 - TSS region transcription start site region 141824
Gm45030 16 76427743 to 76502909 75166 - lincRNA gene predicted gene 45030
Gm30615 16 76454625 to 76471287 16662 - lncRNA gene predicted gene, 30615
Tssr139021 16 76500250 to 76500263 13 + TSS region transcription start site region 139021
Tssr139022 16 76548743 to 76548785 42 + TSS region transcription start site region 139022
Gm30726 16 76548798 to 76550857 2059 + lincRNA gene predicted gene, 30726
D16Mit176 16 76576433 to 76576550 117 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 176
Gm45029 16 76680513 to 76741443 60930 + lincRNA gene predicted gene 45029
Gm30790 16 76751793 to 76779092 27299 - lincRNA gene predicted gene, 30790
Tssr139023 16 76814520 to 76814524 4 + TSS region transcription start site region 139023
D16Mit188 16 76817593 to 76817716 123 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 188
1700063K16Rik 16 76821293 to 76821741 448 - pseudogene RIKEN cDNA 1700063K16 gene
Tssr139024 16 76824770 to 76824772 2 + TSS region transcription start site region 139024
Tssr139025 16 76926207 to 76926216 9 + TSS region transcription start site region 139025
Gm7501 16 76941616 to 76942183 567 + pseudogene predicted gene 7501
1700041M19Rik 16 77004228 to 77010881 6653 - lincRNA gene RIKEN cDNA 1700041M19 gene
Tssr141825 16 77010869 to 77010888 19 - TSS region transcription start site region 141825
Cpgi8373 16 77013310 to 77014442 1132 CpG island CpG island 8373
Tssr139026 16 77013700 to 77013775 75 + TSS region transcription start site region 139026
Usp25 16 77013706 to 77116780 103074 + protein coding gene ubiquitin specific peptidase 25