Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 16:7371666-8531676

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33 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Rbfox1 16 5885355 to 7411526 1526171 + protein coding gene RNA binding protein, fox-1 homolog (C. elegans) 1
Tssr136988 16 7409781 to 7409794 13 + TSS region transcription start site region 136988
D16Mit122 16 7445880 to 7445989 109 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 122
Heal11 16 7445880 to 7445989 109 QTL wound healing/regeneration 11
Nhdlq10 16 7445880 to 7445989 109 QTL non-HDL QTL 10
Gm49533 16 7708736 to 7709066 330 - pseudogene predicted gene, 49533
Tssr4787 16 7767870 to 7767879 9 + TSS region transcription start site region 4787
Gm29854 16 7767891 to 7771595 3704 + lncRNA gene predicted gene, 29854
Tssr136989 16 7828205 to 7828208 3 + TSS region transcription start site region 136989
Gm49534 16 7870102 to 7879859 9757 + lincRNA gene predicted gene, 49534
Tssr139854 16 7951666 to 7951676 10 - TSS region transcription start site region 139854
D16Mit142 16 7983236 to 7983378 142 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 142
Gm49535 16 8103374 to 8103788 414 - pseudogene predicted gene, 49535
Gm23476 16 8203975 to 8204248 273 + unclassified non-coding RNA gene predicted gene, 23476
Gm26159 16 8336993 to 8337096 103 + snRNA gene predicted gene, 26159
Gm29936 16 8338906 to 8365012 26106 - lncRNA gene predicted gene, 29936
Tssr139855 16 8362727 to 8362737 10 - TSS region transcription start site region 139855
Gm24579 16 8402814 to 8402957 143 + snoRNA gene predicted gene, 24579
Tmem114 16 8409276 to 8425136 15860 - protein coding gene transmembrane protein 114
Cpgi7937 16 8424209 to 8425223 1014 CpG island CpG island 7937
Tssr139856 16 8425104 to 8425144 40 - TSS region transcription start site region 139856
Tssr139857 16 8425150 to 8425161 11 - TSS region transcription start site region 139857
Gm25782 16 8449498 to 8449786 288 - unclassified non-coding RNA gene predicted gene, 25782
Gm30012 16 8457687 to 8473692 16005 - lncRNA gene predicted gene, 30012
Cpgi7938 16 8470608 to 8471285 677 CpG island CpG island 7938
Mettl22 16 8470751 to 8490205 19454 + protein coding gene methyltransferase like 22
Tssr136990 16 8470763 to 8470807 44 + TSS region transcription start site region 136990
Tssr139858 16 8471079 to 8471107 28 - TSS region transcription start site region 139858
Gm23706 16 8480660 to 8480741 81 - snoRNA gene predicted gene, 23706
Cpgi7939 16 8513146 to 8513742 596 CpG island CpG island 7939
Abat 16 8513429 to 8621568 108139 + protein coding gene 4-aminobutyrate aminotransferase
Tssr136991 16 8513472 to 8513497 25 + TSS region transcription start site region 136991
Dice1a 16 11139842 to 7983236 -3156606 QTL determination of interleukin 4 commitment 1a