Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 16:72667221-75667988

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156 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Skts-fp3 16 40233519 to 73127497 32893978 QTL skin tumor susceptibility in FVB and PWK 3
Robo1 16 72308306 to 73046095 737789 + protein coding gene roundabout guidance receptor 1
Tssr138985 16 72669508 to 72669512 4 + TSS region transcription start site region 138985
C030046M01Rik 16 72731487 to 72732553 1066 unclassified gene RIKEN cDNA C030046M01 gene
Tssr138986 16 72765070 to 72765076 6 + TSS region transcription start site region 138986
Tssr138987 16 72777047 to 72777052 5 + TSS region transcription start site region 138987
Tssr138988 16 72788400 to 72788401 1 + TSS region transcription start site region 138988
D230034L24Rik 16 72797806 to 72802004 4198 unclassified gene RIKEN cDNA D230034L24 gene
Tssr141723 16 72823665 to 72823666 1 - TSS region transcription start site region 141723
Lith14 16 72864958 to 72865073 115 QTL lithogenic gene 14
D16Mit65 16 72864958 to 72865073 115 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 65
Cpgi8367 16 72894502 to 72894767 265 CpG island CpG island 8367
D16Mit151 16 72922765 to 72922896 131 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 151
Tssr138989 16 72930933 to 72930937 4 + TSS region transcription start site region 138989
Tssr4935 16 72957461 to 72957466 5 + TSS region transcription start site region 4935
Tssr138990 16 72982944 to 72982945 1 + TSS region transcription start site region 138990
D16Mit187 16 73000593 to 73000702 109 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 187
Tssr138991 16 73011592 to 73011605 13 + TSS region transcription start site region 138991
Tssr138992 16 73011607 to 73011621 14 + TSS region transcription start site region 138992
Tssr138993 16 73045333 to 73045349 16 + TSS region transcription start site region 138993
Tssr138994 16 73045776 to 73045788 12 + TSS region transcription start site region 138994
4930500H12Rik 16 73072346 to 73410430 338084 + lncRNA gene RIKEN cDNA 4930500H12 gene
Tssr138995 16 73072363 to 73072366 3 + TSS region transcription start site region 138995
Tssr138996 16 73072369 to 73072382 13 + TSS region transcription start site region 138996
Tssr138997 16 73072389 to 73072400 11 + TSS region transcription start site region 138997
Tssr4936 16 73086444 to 73086445 1 + TSS region transcription start site region 4936
D16Mit202 16 73127308 to 73127497 189 DNA segment DNA Segment, Chr 16, Massachusetts Institute of Technology 202
Tssr138998 16 73202097 to 73202098 1 + TSS region transcription start site region 138998
D16Mit141.2 16 73228347 to 73228461 114 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 141.2
D16Mit141 16 73228503 to 73228579 76 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 141
D16Mit116 16 73332909 to 73333034 125 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 116
Gm25699 16 73422793 to 73422959 166 - snRNA gene predicted gene, 25699
Gm18825 16 73463807 to 73464823 1016 - pseudogene predicted gene, 18825
2310066N15Rik 16 73471718 to 73472462 744 unclassified gene RIKEN cDNA 2310066N15 gene
Gm41472 16 73481105 to 73508146 27041 + lncRNA gene predicted gene, 41472
Gm49680 16 73484857 to 73485315 458 + pseudogene predicted gene, 49680
Tssr138999 16 73497317 to 73497328 11 + TSS region transcription start site region 138999
D16Mit117 16 73512390 to 73512527 137 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 117
D16Mit117.1 16 73512516 to 73512634 118 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 117.1
Gm18168 16 73603534 to 73604054 520 - pseudogene predicted gene, 18168
Tssr4937 16 73678900 to 73678902 2 + TSS region transcription start site region 4937
Pod 16 73747957 to 84553438 10805481 QTL plasticity of ocular dominance
Tssr4938 16 73794140 to 73794141 1 - TSS region transcription start site region 4938
D16Mit175 16 73881878 to 73881980 102 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 175
Robo2 16 73891839 to 74411825 519986 - protein coding gene roundabout guidance receptor 2
Tssr141724 16 73913096 to 73913098 2 - TSS region transcription start site region 141724
Tssr141725 16 73958357 to 73958368 11 - TSS region transcription start site region 141725
Tssr141726 16 73958385 to 73958406 21 - TSS region transcription start site region 141726
Tssr141727 16 73958408 to 73958411 3 - TSS region transcription start site region 141727
Gm24272 16 73974441 to 73974538 97 + miRNA gene predicted gene, 24272
Tssr141728 16 74053003 to 74053007 4 - TSS region transcription start site region 141728
Gm22163 16 74058899 to 74059033 134 - snoRNA gene predicted gene, 22163
Gm49660 16 74062050 to 74065853 3803 - unclassified gene predicted gene, 49660
2510042H03Rik 16 74167221 to 74167988 767 unclassified gene RIKEN cDNA 2510042H03 gene
Gm49659 16 74176793 to 74178834 2041 - unclassified gene predicted gene, 49659
Gm49658 16 74188831 to 74192499 3668 - unclassified gene predicted gene, 49658
D16Ium57 16 74242148 to 74242380 232 DNA segment DNA segment, Chr 16, Indiana University Medical 57
Gm18021 16 74248927 to 74249731 804 + pseudogene predicted gene, 18021
Tssr141729 16 74279195 to 74279206 11 - TSS region transcription start site region 141729
Tssr141730 16 74279314 to 74279353 39 - TSS region transcription start site region 141730
Tssr141731 16 74279415 to 74279454 39 - TSS region transcription start site region 141731
Tssr141732 16 74279456 to 74279470 14 - TSS region transcription start site region 141732
Tssr141733 16 74279637 to 74279643 6 - TSS region transcription start site region 141733
Tssr141734 16 74279737 to 74279741 4 - TSS region transcription start site region 141734
Tssr141735 16 74301391 to 74301396 5 - TSS region transcription start site region 141735
Tssr141736 16 74303685 to 74303688 3 - TSS region transcription start site region 141736
Tssr4939 16 74306528 to 74306537 9 - TSS region transcription start site region 4939
Mir691 16 74341990 to 74342067 77 - miRNA gene microRNA 691
Cpgi8368 16 74411344 to 74412225 881 CpG island CpG island 8368
Tssr141737 16 74411415 to 74411430 15 - TSS region transcription start site region 141737
Tssr141738 16 74411444 to 74411451 7 - TSS region transcription start site region 141738
Tssr141739 16 74411507 to 74411543 36 - TSS region transcription start site region 141739
Tssr141740 16 74411567 to 74411628 61 - TSS region transcription start site region 141740
Tssr141741 16 74411718 to 74411731 13 - TSS region transcription start site region 141741
Tssr141742 16 74411776 to 74411792 16 - TSS region transcription start site region 141742
Tssr141743 16 74411801 to 74411806 5 - TSS region transcription start site region 141743
Tssr141744 16 74411807 to 74411832 25 - TSS region transcription start site region 141744
Tssr141745 16 74411866 to 74411880 14 - TSS region transcription start site region 141745
Tssr141746 16 74412116 to 74412131 15 - TSS region transcription start site region 141746
Tssr141747 16 74502586 to 74502588 2 - TSS region transcription start site region 141747
Gm49671 16 74606262 to 74606561 299 + pseudogene predicted gene, 49671
Gm26307 16 74607757 to 74607882 125 + snoRNA gene predicted gene, 26307
Tssr139000 16 74620031 to 74620039 8 + TSS region transcription start site region 139000
Tssr139001 16 74620040 to 74620050 10 + TSS region transcription start site region 139001
Tssr139002 16 74620059 to 74620069 10 + TSS region transcription start site region 139002
Tssr141748 16 74621230 to 74621236 6 - TSS region transcription start site region 141748
Tssr141749 16 74644231 to 74644237 6 - TSS region transcription start site region 141749
Tssr141750 16 74672469 to 74672480 11 - TSS region transcription start site region 141750
Tssr141751 16 74730959 to 74730963 4 - TSS region transcription start site region 141751
Tssr141752 16 74731379 to 74731381 2 - TSS region transcription start site region 141752
Tssr141753 16 74736248 to 74736253 5 - TSS region transcription start site region 141753
Tssr141754 16 74754645 to 74754649 4 - TSS region transcription start site region 141754
Tssr141755 16 74760649 to 74760660 11 - TSS region transcription start site region 141755
Tssr141756 16 74760711 to 74760725 14 - TSS region transcription start site region 141756
Tssr139003 16 74804961 to 74804965 4 + TSS region transcription start site region 139003
Tssr141757 16 74815197 to 74815206 9 - TSS region transcription start site region 141757
Tssr141758 16 74826734 to 74826750 16 - TSS region transcription start site region 141758
Tssr141759 16 74826801 to 74826813 12 - TSS region transcription start site region 141759
Tssr139004 16 74828357 to 74828359 2 + TSS region transcription start site region 139004
Tssr141760 16 74828845 to 74828850 5 - TSS region transcription start site region 141760
Tssr141761 16 74867090 to 74867099 9 - TSS region transcription start site region 141761
Gm49674 16 74873039 to 74875938 2899 - unclassified gene predicted gene, 49674
Tssr141762 16 74879449 to 74879452 3 - TSS region transcription start site region 141762
Tssr141763 16 74925850 to 74925857 7 - TSS region transcription start site region 141763
Tssr141764 16 74961139 to 74961143 4 - TSS region transcription start site region 141764
Gm26937 16 74961240 to 74962247 1007 + pseudogene predicted gene, 26937
E130102B10Rik 16 75010698 to 75011089 391 unclassified gene RIKEN cDNA E130102B10 gene
Tssr141765 16 75016103 to 75016116 13 - TSS region transcription start site region 141765
Tssr141766 16 75016141 to 75016161 20 - TSS region transcription start site region 141766
Tssr141767 16 75016165 to 75016186 21 - TSS region transcription start site region 141767
Tssr141768 16 75016425 to 75016434 9 - TSS region transcription start site region 141768
A630036G19Rik 16 75030852 to 75034931 4079 - unclassified gene RIKEN cDNA A630036G19 gene
Tssr141769 16 75047400 to 75047437 37 - TSS region transcription start site region 141769
Tssr141770 16 75047767 to 75047781 14 - TSS region transcription start site region 141770
Tssr141771 16 75047791 to 75047802 11 - TSS region transcription start site region 141771
Tssr141772 16 75047828 to 75047834 6 - TSS region transcription start site region 141772
Tssr141773 16 75052190 to 75052196 6 - TSS region transcription start site region 141773
Tssr141774 16 75053723 to 75053727 4 - TSS region transcription start site region 141774
D16Mit93 16 75066542 to 75066649 107 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 93
Tssr141775 16 75092427 to 75092430 3 - TSS region transcription start site region 141775
Tssr141776 16 75092533 to 75092552 19 - TSS region transcription start site region 141776
Tssr141777 16 75092563 to 75092604 41 - TSS region transcription start site region 141777
Tssr141778 16 75092696 to 75092706 10 - TSS region transcription start site region 141778
Tssr141779 16 75092708 to 75092734 26 - TSS region transcription start site region 141779
Tssr141780 16 75092754 to 75092773 19 - TSS region transcription start site region 141780
Tssr141781 16 75092817 to 75092843 26 - TSS region transcription start site region 141781
Tssr141782 16 75092920 to 75092931 11 - TSS region transcription start site region 141782
Tssr141783 16 75092974 to 75092997 23 - TSS region transcription start site region 141783
Tssr141784 16 75093082 to 75093096 14 - TSS region transcription start site region 141784
Tssr141785 16 75130116 to 75130119 3 - TSS region transcription start site region 141785
Tssr141786 16 75141901 to 75141904 3 - TSS region transcription start site region 141786
Gm49676 16 75147233 to 75147829 596 + pseudogene predicted gene, 49676
Tssr141787 16 75187183 to 75187187 4 - TSS region transcription start site region 141787
Tssr141788 16 75240161 to 75240170 9 - TSS region transcription start site region 141788
Tssr141789 16 75284838 to 75284845 7 - TSS region transcription start site region 141789
Tssr141790 16 75292346 to 75292359 13 - TSS region transcription start site region 141790
Tssr141791 16 75304388 to 75304391 3 - TSS region transcription start site region 141791
Tssr141792 16 75307975 to 75307979 4 - TSS region transcription start site region 141792
Gm30116 16 75382734 to 75389835 7101 - lncRNA gene predicted gene, 30116
Tssr141793 16 75383701 to 75383705 4 - TSS region transcription start site region 141793
Gm49678 16 75388544 to 75447293 58749 - lincRNA gene predicted gene, 49678
Gm49677 16 75395598 to 75399274 3676 - unclassified gene predicted gene, 49677
Tssr141794 16 75399737 to 75399746 9 - TSS region transcription start site region 141794
n-TIaat1 16 75434179 to 75434252 73 + tRNA gene nuclear encoded tRNA isoleucine 1 (anticodon AAT)
Tssr141795 16 75447107 to 75447116 9 - TSS region transcription start site region 141795
Tssr141796 16 75447186 to 75447214 28 - TSS region transcription start site region 141796
Del(16Lipi-Usp25)1Dja 16 75540514 to 77116779 1576265 chromosomal deletion deletion, Chr 16, David J Adams 1
Lipi 16 75540514 to 75586061 45547 - protein coding gene lipase, member I
Tssr141797 16 75586017 to 75586037 20 - TSS region transcription start site region 141797
Cpgi8369 16 75592692 to 75593333 641 CpG island CpG island 8369
Rbm11 16 75592844 to 75602825 9981 + protein coding gene RNA binding motif protein 11
Tssr139005 16 75592901 to 75592928 27 + TSS region transcription start site region 139005
Tssr139006 16 75592938 to 75592965 27 + TSS region transcription start site region 139006
Gm41474 16 75645638 to 75683274 37636 - lncRNA gene predicted gene, 41474
Gm30162 16 75659356 to 75701091 41735 + lincRNA gene predicted gene, 30162
Tssr139007 16 75659363 to 75659380 17 + TSS region transcription start site region 139007