Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 16:69806830-72620759

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87 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Eih3 16 17412079 to 70694896 53282817 QTL ethanol induced hypothermia 3
Dice1b 16 45690637 to 72477597 26786960 QTL determination of interleukin 4 commitment 1b
Speer2 16 69856874 to 69863744 6870 - protein coding gene spermatogenesis associated glutamate (E)-rich protein 2
Tssr141717 16 69861790 to 69861799 9 - TSS region transcription start site region 141717
Tssr138934 16 69863685 to 69863687 2 + TSS region transcription start site region 138934
Tssr141718 16 69863718 to 69863731 13 - TSS region transcription start site region 141718
Tssr141719 16 69863792 to 69863807 15 - TSS region transcription start site region 141719
Tssr138935 16 69863802 to 69863812 10 + TSS region transcription start site region 138935
Tssr138936 16 69863834 to 69863840 6 + TSS region transcription start site region 138936
Gm41471 16 69882922 to 69889260 6338 + lncRNA gene predicted gene, 41471
Tssr141720 16 70006478 to 70006510 32 - TSS region transcription start site region 141720
Gm49655 16 70064587 to 70114717 50130 - lincRNA gene predicted gene, 49655
Gm19082 16 70143165 to 70144272 1107 - pseudogene predicted gene, 19082
Cpgi8363 16 70182250 to 70182446 196 CpG island CpG island 8363
Gm49656 16 70189962 to 70190397 435 + pseudogene predicted gene, 49656
Tssr138937 16 70225010 to 70225025 15 + TSS region transcription start site region 138937
Gm36766 16 70225182 to 70238705 13523 + lncRNA gene predicted gene, 36766
Tssr138938 16 70254442 to 70254446 4 + TSS region transcription start site region 138938
D16Mit186 16 70265667 to 70265810 143 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 186
D16Ertd550e 16 70283768 to 70283971 203 DNA segment DNA segment, Chr 16, ERATO Doi 550, expressed
Gm49657 16 70285257 to 70285681 424 + pseudogene predicted gene, 49657
Cpgi8364 16 70313836 to 70314699 863 CpG island CpG island 8364
Gbe1 16 70313949 to 70569716 255767 + protein coding gene glucan (1,4-alpha-), branching enzyme 1
Tssr138939 16 70313967 to 70313976 9 + TSS region transcription start site region 138939
Tssr138940 16 70313998 to 70314003 5 + TSS region transcription start site region 138940
Tssr138941 16 70314011 to 70314016 5 + TSS region transcription start site region 138941
Tssr138942 16 70314057 to 70314071 14 + TSS region transcription start site region 138942
Tssr138943 16 70314091 to 70314096 5 + TSS region transcription start site region 138943
Tssr138944 16 70314119 to 70314149 30 + TSS region transcription start site region 138944
Tssr138945 16 70314477 to 70314498 21 + TSS region transcription start site region 138945
Tssr138946 16 70314667 to 70314680 13 + TSS region transcription start site region 138946
Tssr138947 16 70315748 to 70315761 13 + TSS region transcription start site region 138947
Tssr138948 16 70321172 to 70321183 11 + TSS region transcription start site region 138948
Tssr138949 16 70321259 to 70321288 29 + TSS region transcription start site region 138949
Tssr138950 16 70352258 to 70352274 16 + TSS region transcription start site region 138950
Tssr138951 16 70400711 to 70400730 19 + TSS region transcription start site region 138951
Tssr138952 16 70401782 to 70401798 16 + TSS region transcription start site region 138952
Tssr138953 16 70402778 to 70402781 3 + TSS region transcription start site region 138953
Tssr138954 16 70407854 to 70407862 8 + TSS region transcription start site region 138954
Tssr138955 16 70408452 to 70408457 5 + TSS region transcription start site region 138955
Tssr138956 16 70409854 to 70409858 4 + TSS region transcription start site region 138956
Tssr138957 16 70417607 to 70417612 5 + TSS region transcription start site region 138957
Tssr138958 16 70437681 to 70437685 4 + TSS region transcription start site region 138958
Tssr138959 16 70499389 to 70499400 11 + TSS region transcription start site region 138959
Tssr138960 16 70504335 to 70504351 16 + TSS region transcription start site region 138960
Tssr138961 16 70504408 to 70504420 12 + TSS region transcription start site region 138961
Tssr141721 16 70517585 to 70517587 2 - TSS region transcription start site region 141721
D16Ertd519e 16 70616425 to 70624822 8397 + lincRNA gene DNA segment, Chr 16, ERATO Doi 519, expressed
Gm19291 16 70665306 to 70665684 378 + pseudogene predicted gene, 19291
Gm49665 16 70747479 to 70747722 243 - pseudogene predicted gene, 49665
D16Mit140 16 70765003 to 70765147 144 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 140
Eae11 16 70765003 to 70765147 144 QTL experimental allergic encephalomyelitis susceptibility 11
Gm18663 16 70791328 to 70792444 1116 + pseudogene predicted gene, 18663
Gm29823 16 70955485 to 71011169 55684 + lincRNA gene predicted gene, 29823
D16Mit67 16 71009119 to 71009353 234 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 67
4931420L22Rik 16 71131076 to 71139029 7953 + lincRNA gene RIKEN cDNA 4931420L22 gene
Gm24968 16 71174822 to 71174928 106 - snRNA gene predicted gene, 24968
Gm18918 16 71210854 to 71211801 947 + pseudogene predicted gene, 18918
Gm49666 16 71211830 to 71215759 3929 - unclassified gene predicted gene, 49666
Tssr138962 16 71249790 to 71249829 39 + TSS region transcription start site region 138962
4930567J20Rik 16 71249904 to 71267176 17272 + lincRNA gene RIKEN cDNA 4930567J20 gene
Gm22797 16 71663788 to 71663918 130 + snoRNA gene predicted gene, 22797
Gm18549 16 71854938 to 71855780 842 - pseudogene predicted gene, 18549
Gm18550 16 71857257 to 71858238 981 + pseudogene predicted gene, 18550
Tssr4934 16 71868951 to 71868953 2 + TSS region transcription start site region 4934
Gm49667 16 71879044 to 71879229 185 + pseudogene predicted gene, 49667
Tssr138963 16 72027461 to 72027470 9 + TSS region transcription start site region 138963
Tssr138964 16 72027507 to 72027526 19 + TSS region transcription start site region 138964
Tssr138965 16 72027602 to 72027613 11 + TSS region transcription start site region 138965
Tssr138966 16 72027627 to 72027644 17 + TSS region transcription start site region 138966
Tssr138967 16 72027649 to 72027670 21 + TSS region transcription start site region 138967
Tssr138968 16 72027683 to 72027694 11 + TSS region transcription start site region 138968
Tssr138969 16 72027707 to 72027720 13 + TSS region transcription start site region 138969
Cpgi8365 16 72028834 to 72029262 428 CpG island CpG island 8365
Tssr138970 16 72083108 to 72083111 3 + TSS region transcription start site region 138970
3110049I03Rik 16 72118204 to 72119443 1239 unclassified gene RIKEN cDNA 3110049I03 gene
8030451O07Rik 16 72226383 to 72234327 7944 - lincRNA gene RIKEN cDNA 8030451O07 gene
Tssr141722 16 72264401 to 72264405 4 - TSS region transcription start site region 141722
Robo1 16 72308306 to 73046095 737789 + protein coding gene roundabout guidance receptor 1
D16Mit174 16 72319250 to 72319451 201 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 174
Tssr138971 16 72358469 to 72358473 4 + TSS region transcription start site region 138971
Gm49670 16 72372099 to 72372441 342 - pseudogene predicted gene, 49670
D16Ium54 16 72400543 to 72400688 145 DNA segment DNA segment, Chr 16, Indiana University Medical 54
D16Mit27 16 72477491 to 72477597 106 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 27
Tssr138972 16 72563384 to 72563395 11 + TSS region transcription start site region 138972
Tssr138973 16 72563412 to 72563421 9 + TSS region transcription start site region 138973
Tssr138974 16 72563508 to 72563540 32 + TSS region transcription start site region 138974