Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 16:68847854-71967862

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77 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Eih3 16 17412079 to 70694896 53282817 QTL ethanol induced hypothermia 3
Tssr138933 16 68888311 to 68888346 35 + TSS region transcription start site region 138933
Gm46542 16 68888346 to 68888595 249 + pseudogene predicted gene, 46542
D16Ium55 16 68895359 to 68895652 293 DNA segment DNA segment, Chr 16, Indiana University Medical 55
Gm23591 16 68901896 to 68902181 285 + unclassified non-coding RNA gene predicted gene, 23591
D16Mit200 16 68969902 to 68969997 95 DNA segment DNA Segment, Chr 16, Massachusetts Institute of Technology 200
Gm18496 16 68999446 to 69000108 662 + pseudogene predicted gene, 18496
Tssr4933 16 69254162 to 69254185 23 + TSS region transcription start site region 4933
Cpgi8362 16 69429768 to 69430145 377 CpG island CpG island 8362
4930428D20Rik 16 69796141 to 69800381 4240 - lincRNA gene RIKEN cDNA 4930428D20 gene
Tssr141715 16 69800377 to 69800399 22 - TSS region transcription start site region 141715
Tssr141716 16 69800401 to 69800416 15 - TSS region transcription start site region 141716
Gm18897 16 69805873 to 69806815 942 + pseudogene predicted gene, 18897
Speer2 16 69856874 to 69863744 6870 - protein coding gene spermatogenesis associated glutamate (E)-rich protein 2
Tssr141717 16 69861790 to 69861799 9 - TSS region transcription start site region 141717
Tssr138934 16 69863685 to 69863687 2 + TSS region transcription start site region 138934
Tssr141718 16 69863718 to 69863731 13 - TSS region transcription start site region 141718
Tssr141719 16 69863792 to 69863807 15 - TSS region transcription start site region 141719
Tssr138935 16 69863802 to 69863812 10 + TSS region transcription start site region 138935
Tssr138936 16 69863834 to 69863840 6 + TSS region transcription start site region 138936
Gm41471 16 69882922 to 69889260 6338 + lncRNA gene predicted gene, 41471
Tssr141720 16 70006478 to 70006510 32 - TSS region transcription start site region 141720
Gm49655 16 70064587 to 70114717 50130 - lincRNA gene predicted gene, 49655
Gm19082 16 70143165 to 70144272 1107 - pseudogene predicted gene, 19082
Cpgi8363 16 70182250 to 70182446 196 CpG island CpG island 8363
Gm49656 16 70189962 to 70190397 435 + pseudogene predicted gene, 49656
Tssr138937 16 70225010 to 70225025 15 + TSS region transcription start site region 138937
Gm36766 16 70225182 to 70238705 13523 + lncRNA gene predicted gene, 36766
Tssr138938 16 70254442 to 70254446 4 + TSS region transcription start site region 138938
D16Mit186 16 70265667 to 70265810 143 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 186
D16Ertd550e 16 70283768 to 70283971 203 DNA segment DNA segment, Chr 16, ERATO Doi 550, expressed
Gm49657 16 70285257 to 70285681 424 + pseudogene predicted gene, 49657
Cpgi8364 16 70313836 to 70314699 863 CpG island CpG island 8364
Gbe1 16 70313949 to 70569716 255767 + protein coding gene glucan (1,4-alpha-), branching enzyme 1
Tssr138939 16 70313967 to 70313976 9 + TSS region transcription start site region 138939
Tssr138940 16 70313998 to 70314003 5 + TSS region transcription start site region 138940
Tssr138941 16 70314011 to 70314016 5 + TSS region transcription start site region 138941
Tssr138942 16 70314057 to 70314071 14 + TSS region transcription start site region 138942
Tssr138943 16 70314091 to 70314096 5 + TSS region transcription start site region 138943
Tssr138944 16 70314119 to 70314149 30 + TSS region transcription start site region 138944
Tssr138945 16 70314477 to 70314498 21 + TSS region transcription start site region 138945
Tssr138946 16 70314667 to 70314680 13 + TSS region transcription start site region 138946
Tssr138947 16 70315748 to 70315761 13 + TSS region transcription start site region 138947
Tssr138948 16 70321172 to 70321183 11 + TSS region transcription start site region 138948
Tssr138949 16 70321259 to 70321288 29 + TSS region transcription start site region 138949
Tssr138950 16 70352258 to 70352274 16 + TSS region transcription start site region 138950
Tssr138951 16 70400711 to 70400730 19 + TSS region transcription start site region 138951
Tssr138952 16 70401782 to 70401798 16 + TSS region transcription start site region 138952
Tssr138953 16 70402778 to 70402781 3 + TSS region transcription start site region 138953
Tssr138954 16 70407854 to 70407862 8 + TSS region transcription start site region 138954
Tssr138955 16 70408452 to 70408457 5 + TSS region transcription start site region 138955
Tssr138956 16 70409854 to 70409858 4 + TSS region transcription start site region 138956
Tssr138957 16 70417607 to 70417612 5 + TSS region transcription start site region 138957
Tssr138958 16 70437681 to 70437685 4 + TSS region transcription start site region 138958
Tssr138959 16 70499389 to 70499400 11 + TSS region transcription start site region 138959
Tssr138960 16 70504335 to 70504351 16 + TSS region transcription start site region 138960
Tssr138961 16 70504408 to 70504420 12 + TSS region transcription start site region 138961
Tssr141721 16 70517585 to 70517587 2 - TSS region transcription start site region 141721
D16Ertd519e 16 70616425 to 70624822 8397 + lincRNA gene DNA segment, Chr 16, ERATO Doi 519, expressed
Gm19291 16 70665306 to 70665684 378 + pseudogene predicted gene, 19291
Gm49665 16 70747479 to 70747722 243 - pseudogene predicted gene, 49665
Eae11 16 70765003 to 70765147 144 QTL experimental allergic encephalomyelitis susceptibility 11
D16Mit140 16 70765003 to 70765147 144 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 140
Gm18663 16 70791328 to 70792444 1116 + pseudogene predicted gene, 18663
Gm29823 16 70955485 to 71011169 55684 + lincRNA gene predicted gene, 29823
D16Mit67 16 71009119 to 71009353 234 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 67
4931420L22Rik 16 71131076 to 71139029 7953 + lincRNA gene RIKEN cDNA 4931420L22 gene
Gm24968 16 71174822 to 71174928 106 - snRNA gene predicted gene, 24968
Gm18918 16 71210854 to 71211801 947 + pseudogene predicted gene, 18918
Gm49666 16 71211830 to 71215759 3929 - unclassified gene predicted gene, 49666
Tssr138962 16 71249790 to 71249829 39 + TSS region transcription start site region 138962
4930567J20Rik 16 71249904 to 71267176 17272 + lincRNA gene RIKEN cDNA 4930567J20 gene
Gm22797 16 71663788 to 71663918 130 + snoRNA gene predicted gene, 22797
Gm18549 16 71854938 to 71855780 842 - pseudogene predicted gene, 18549
Gm18550 16 71857257 to 71858238 981 + pseudogene predicted gene, 18550
Tssr4934 16 71868951 to 71868953 2 + TSS region transcription start site region 4934
Gm49667 16 71879044 to 71879229 185 + pseudogene predicted gene, 49667