Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 16:66960935-70061169

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66 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cadm2 16 66655421 to 67620908 965487 - protein coding gene cell adhesion molecule 2
D16Mit222 16 67013694 to 67013867 173 DNA segment DNA Segment, Chr 16, Massachusetts Institute of Technology 222
Tssr141695 16 67016255 to 67016258 3 - TSS region transcription start site region 141695
D16Mit105 16 67068507 to 67068621 114 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 105
Tssr141696 16 67072627 to 67072630 3 - TSS region transcription start site region 141696
Tssr141697 16 67112636 to 67112644 8 - TSS region transcription start site region 141697
Tssr141698 16 67182834 to 67182838 4 - TSS region transcription start site region 141698
Tssr141699 16 67197537 to 67197542 5 - TSS region transcription start site region 141699
Gm49640 16 67238128 to 67238350 222 - pseudogene predicted gene, 49640
D16Mit215 16 67243956 to 67244080 124 DNA segment DNA Segment, Chr 16 Massachusetts Institute of Technology 215
Tssr141700 16 67278268 to 67278272 4 - TSS region transcription start site region 141700
9330155M09Rik 16 67443102 to 67446021 2919 - unclassified gene RIKEN cDNA 9330155M09 gene
Tssr141701 16 67518265 to 67518268 3 - TSS region transcription start site region 141701
Tssr141702 16 67519506 to 67519522 16 - TSS region transcription start site region 141702
Tssr141703 16 67545838 to 67545850 12 - TSS region transcription start site region 141703
Tssr141704 16 67545957 to 67545964 7 - TSS region transcription start site region 141704
Tssr141705 16 67584135 to 67584140 5 - TSS region transcription start site region 141705
Tssr141706 16 67588663 to 67588665 2 - TSS region transcription start site region 141706
Gm15828 16 67592705 to 67593226 521 - pseudogene predicted gene 15828
Tssr141707 16 67594781 to 67594808 27 - TSS region transcription start site region 141707
D16Ium50 16 67600113 to 67600420 307 DNA segment DNA segment, Chr 16, Indiana University Medical 50
Tssr141708 16 67602557 to 67602578 21 - TSS region transcription start site region 141708
Tssr141709 16 67602615 to 67602634 19 - TSS region transcription start site region 141709
Tssr141710 16 67605999 to 67606005 6 - TSS region transcription start site region 141710
Cpgi8360 16 67617824 to 67618207 383 CpG island CpG island 8360
Tssr141711 16 67618787 to 67618791 4 - TSS region transcription start site region 141711
Cpgi8361 16 67619614 to 67621313 1699 CpG island CpG island 8361
Tssr4929 16 67620635 to 67620671 36 - TSS region transcription start site region 4929
Tssr4930 16 67620760 to 67620795 35 - TSS region transcription start site region 4930
Tssr141712 16 67620805 to 67620816 11 - TSS region transcription start site region 141712
Tssr141713 16 67620880 to 67620922 42 - TSS region transcription start site region 141713
Tssr141714 16 67620923 to 67620932 9 - TSS region transcription start site region 141714
D16Mit66 16 67628813 to 67629022 209 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 66
Tssr138932 16 67648568 to 67648574 6 + TSS region transcription start site region 138932
Gm49648 16 67701673 to 67741117 39444 - lincRNA gene predicted gene, 49648
D16Mit76 16 67719260 to 67719347 87 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 76
Gm49649 16 68006962 to 68007361 399 - pseudogene predicted gene, 49649
Gm18495 16 68051255 to 68051807 552 + pseudogene predicted gene, 18495
Tssr4931 16 68104319 to 68104321 2 + TSS region transcription start site region 4931
Tssr4932 16 68129711 to 68129713 2 + TSS region transcription start site region 4932
Gm49650 16 68164459 to 68164855 396 - pseudogene predicted gene, 49650
D16Ium59 16 68307635 to 68307821 186 DNA segment DNA segment, Chr 16, Indiana University Medical 59
Gm24681 16 68452859 to 68452965 106 - snoRNA gene predicted gene, 24681
D16Ium63 16 68472675 to 68472838 163 DNA segment DNA segment, Chr 16, Indiana University Medical 63
Gm49651 16 68510935 to 68511169 234 + pseudogene predicted gene, 49651
Tssr138933 16 68888311 to 68888346 35 + TSS region transcription start site region 138933
Gm46542 16 68888346 to 68888595 249 + pseudogene predicted gene, 46542
D16Ium55 16 68895359 to 68895652 293 DNA segment DNA segment, Chr 16, Indiana University Medical 55
Gm23591 16 68901896 to 68902181 285 + unclassified non-coding RNA gene predicted gene, 23591
D16Mit200 16 68969902 to 68969997 95 DNA segment DNA Segment, Chr 16, Massachusetts Institute of Technology 200
Gm18496 16 68999446 to 69000108 662 + pseudogene predicted gene, 18496
Tssr4933 16 69254162 to 69254185 23 + TSS region transcription start site region 4933
Cpgi8362 16 69429768 to 69430145 377 CpG island CpG island 8362
4930428D20Rik 16 69796141 to 69800381 4240 - lincRNA gene RIKEN cDNA 4930428D20 gene
Tssr141715 16 69800377 to 69800399 22 - TSS region transcription start site region 141715
Tssr141716 16 69800401 to 69800416 15 - TSS region transcription start site region 141716
Gm18897 16 69805873 to 69806815 942 + pseudogene predicted gene, 18897
Speer2 16 69856874 to 69863744 6870 - protein coding gene spermatogenesis associated glutamate (E)-rich protein 2
Tssr141717 16 69861790 to 69861799 9 - TSS region transcription start site region 141717
Tssr138934 16 69863685 to 69863687 2 + TSS region transcription start site region 138934
Tssr141718 16 69863718 to 69863731 13 - TSS region transcription start site region 141718
Tssr141719 16 69863792 to 69863807 15 - TSS region transcription start site region 141719
Tssr138935 16 69863802 to 69863812 10 + TSS region transcription start site region 138935
Tssr138936 16 69863834 to 69863840 6 + TSS region transcription start site region 138936
Gm41471 16 69882922 to 69889260 6338 + lncRNA gene predicted gene, 41471
Tssr141720 16 70006478 to 70006510 32 - TSS region transcription start site region 141720