Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 16:66485935-70536169

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110 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
D16Mit149 16 66487250 to 66487374 124 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 149
Cadm2 16 66655421 to 67620908 965487 - protein coding gene cell adhesion molecule 2
Tssr138930 16 66657107 to 66657142 35 + TSS region transcription start site region 138930
1700010K23Rik 16 66657118 to 66664626 7508 + antisense lncRNA gene RIKEN cDNA 1700010K23 gene
Tssr141693 16 66744588 to 66744601 13 - TSS region transcription start site region 141693
Tssr138931 16 66852633 to 66852635 2 + TSS region transcription start site region 138931
Tssr141694 16 66865429 to 66865432 3 - TSS region transcription start site region 141694
4933411O13Rik 16 66892503 to 66910841 18338 + antisense lncRNA gene RIKEN cDNA 4933411O13 gene
2900041H08Rik 16 66951233 to 66951412 179 unclassified gene RIKEN cDNA 2900041H08 gene
D16Mit222 16 67013694 to 67013867 173 DNA segment DNA Segment, Chr 16, Massachusetts Institute of Technology 222
Tssr141695 16 67016255 to 67016258 3 - TSS region transcription start site region 141695
D16Mit105 16 67068507 to 67068621 114 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 105
Tssr141696 16 67072627 to 67072630 3 - TSS region transcription start site region 141696
Tssr141697 16 67112636 to 67112644 8 - TSS region transcription start site region 141697
Tssr141698 16 67182834 to 67182838 4 - TSS region transcription start site region 141698
Tssr141699 16 67197537 to 67197542 5 - TSS region transcription start site region 141699
Gm49640 16 67238128 to 67238350 222 - pseudogene predicted gene, 49640
D16Mit215 16 67243956 to 67244080 124 DNA segment DNA Segment, Chr 16 Massachusetts Institute of Technology 215
Tssr141700 16 67278268 to 67278272 4 - TSS region transcription start site region 141700
9330155M09Rik 16 67443102 to 67446021 2919 - unclassified gene RIKEN cDNA 9330155M09 gene
Tssr141701 16 67518265 to 67518268 3 - TSS region transcription start site region 141701
Tssr141702 16 67519506 to 67519522 16 - TSS region transcription start site region 141702
Tssr141703 16 67545838 to 67545850 12 - TSS region transcription start site region 141703
Tssr141704 16 67545957 to 67545964 7 - TSS region transcription start site region 141704
Tssr141705 16 67584135 to 67584140 5 - TSS region transcription start site region 141705
Tssr141706 16 67588663 to 67588665 2 - TSS region transcription start site region 141706
Gm15828 16 67592705 to 67593226 521 - pseudogene predicted gene 15828
Tssr141707 16 67594781 to 67594808 27 - TSS region transcription start site region 141707
D16Ium50 16 67600113 to 67600420 307 DNA segment DNA segment, Chr 16, Indiana University Medical 50
Tssr141708 16 67602557 to 67602578 21 - TSS region transcription start site region 141708
Tssr141709 16 67602615 to 67602634 19 - TSS region transcription start site region 141709
Tssr141710 16 67605999 to 67606005 6 - TSS region transcription start site region 141710
Cpgi8360 16 67617824 to 67618207 383 CpG island CpG island 8360
Tssr141711 16 67618787 to 67618791 4 - TSS region transcription start site region 141711
Cpgi8361 16 67619614 to 67621313 1699 CpG island CpG island 8361
Tssr4929 16 67620635 to 67620671 36 - TSS region transcription start site region 4929
Tssr4930 16 67620760 to 67620795 35 - TSS region transcription start site region 4930
Tssr141712 16 67620805 to 67620816 11 - TSS region transcription start site region 141712
Tssr141713 16 67620880 to 67620922 42 - TSS region transcription start site region 141713
Tssr141714 16 67620923 to 67620932 9 - TSS region transcription start site region 141714
D16Mit66 16 67628813 to 67629022 209 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 66
Tssr138932 16 67648568 to 67648574 6 + TSS region transcription start site region 138932
Gm49648 16 67701673 to 67741117 39444 - lincRNA gene predicted gene, 49648
D16Mit76 16 67719260 to 67719347 87 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 76
Gm49649 16 68006962 to 68007361 399 - pseudogene predicted gene, 49649
Gm18495 16 68051255 to 68051807 552 + pseudogene predicted gene, 18495
Tssr4931 16 68104319 to 68104321 2 + TSS region transcription start site region 4931
Tssr4932 16 68129711 to 68129713 2 + TSS region transcription start site region 4932
Gm49650 16 68164459 to 68164855 396 - pseudogene predicted gene, 49650
D16Ium59 16 68307635 to 68307821 186 DNA segment DNA segment, Chr 16, Indiana University Medical 59
Gm24681 16 68452859 to 68452965 106 - snoRNA gene predicted gene, 24681
D16Ium63 16 68472675 to 68472838 163 DNA segment DNA segment, Chr 16, Indiana University Medical 63
Gm49651 16 68510935 to 68511169 234 + pseudogene predicted gene, 49651
Tssr138933 16 68888311 to 68888346 35 + TSS region transcription start site region 138933
Gm46542 16 68888346 to 68888595 249 + pseudogene predicted gene, 46542
D16Ium55 16 68895359 to 68895652 293 DNA segment DNA segment, Chr 16, Indiana University Medical 55
Gm23591 16 68901896 to 68902181 285 + unclassified non-coding RNA gene predicted gene, 23591
D16Mit200 16 68969902 to 68969997 95 DNA segment DNA Segment, Chr 16, Massachusetts Institute of Technology 200
Gm18496 16 68999446 to 69000108 662 + pseudogene predicted gene, 18496
Tssr4933 16 69254162 to 69254185 23 + TSS region transcription start site region 4933
Cpgi8362 16 69429768 to 69430145 377 CpG island CpG island 8362
4930428D20Rik 16 69796141 to 69800381 4240 - lincRNA gene RIKEN cDNA 4930428D20 gene
Tssr141715 16 69800377 to 69800399 22 - TSS region transcription start site region 141715
Tssr141716 16 69800401 to 69800416 15 - TSS region transcription start site region 141716
Gm18897 16 69805873 to 69806815 942 + pseudogene predicted gene, 18897
Speer2 16 69856874 to 69863744 6870 - protein coding gene spermatogenesis associated glutamate (E)-rich protein 2
Tssr141717 16 69861790 to 69861799 9 - TSS region transcription start site region 141717
Tssr138934 16 69863685 to 69863687 2 + TSS region transcription start site region 138934
Tssr141718 16 69863718 to 69863731 13 - TSS region transcription start site region 141718
Tssr141719 16 69863792 to 69863807 15 - TSS region transcription start site region 141719
Tssr138935 16 69863802 to 69863812 10 + TSS region transcription start site region 138935
Tssr138936 16 69863834 to 69863840 6 + TSS region transcription start site region 138936
Gm41471 16 69882922 to 69889260 6338 + lncRNA gene predicted gene, 41471
Tssr141720 16 70006478 to 70006510 32 - TSS region transcription start site region 141720
Gm49655 16 70064587 to 70114717 50130 - lincRNA gene predicted gene, 49655
Gm19082 16 70143165 to 70144272 1107 - pseudogene predicted gene, 19082
Cpgi8363 16 70182250 to 70182446 196 CpG island CpG island 8363
Gm49656 16 70189962 to 70190397 435 + pseudogene predicted gene, 49656
Tssr138937 16 70225010 to 70225025 15 + TSS region transcription start site region 138937
Gm36766 16 70225182 to 70238705 13523 + lncRNA gene predicted gene, 36766
Tssr138938 16 70254442 to 70254446 4 + TSS region transcription start site region 138938
D16Mit186 16 70265667 to 70265810 143 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 186
D16Ertd550e 16 70283768 to 70283971 203 DNA segment DNA segment, Chr 16, ERATO Doi 550, expressed
Gm49657 16 70285257 to 70285681 424 + pseudogene predicted gene, 49657
Cpgi8364 16 70313836 to 70314699 863 CpG island CpG island 8364
Gbe1 16 70313949 to 70569716 255767 + protein coding gene glucan (1,4-alpha-), branching enzyme 1
Tssr138939 16 70313967 to 70313976 9 + TSS region transcription start site region 138939
Tssr138940 16 70313998 to 70314003 5 + TSS region transcription start site region 138940
Tssr138941 16 70314011 to 70314016 5 + TSS region transcription start site region 138941
Tssr138942 16 70314057 to 70314071 14 + TSS region transcription start site region 138942
Tssr138943 16 70314091 to 70314096 5 + TSS region transcription start site region 138943
Tssr138944 16 70314119 to 70314149 30 + TSS region transcription start site region 138944
Tssr138945 16 70314477 to 70314498 21 + TSS region transcription start site region 138945
Tssr138946 16 70314667 to 70314680 13 + TSS region transcription start site region 138946
Tssr138947 16 70315748 to 70315761 13 + TSS region transcription start site region 138947
Tssr138948 16 70321172 to 70321183 11 + TSS region transcription start site region 138948
Tssr138949 16 70321259 to 70321288 29 + TSS region transcription start site region 138949
Tssr138950 16 70352258 to 70352274 16 + TSS region transcription start site region 138950
Tssr138951 16 70400711 to 70400730 19 + TSS region transcription start site region 138951
Tssr138952 16 70401782 to 70401798 16 + TSS region transcription start site region 138952
Tssr138953 16 70402778 to 70402781 3 + TSS region transcription start site region 138953
Tssr138954 16 70407854 to 70407862 8 + TSS region transcription start site region 138954
Tssr138955 16 70408452 to 70408457 5 + TSS region transcription start site region 138955
Tssr138956 16 70409854 to 70409858 4 + TSS region transcription start site region 138956
Tssr138957 16 70417607 to 70417612 5 + TSS region transcription start site region 138957
Tssr138958 16 70437681 to 70437685 4 + TSS region transcription start site region 138958
Tssr138959 16 70499389 to 70499400 11 + TSS region transcription start site region 138959
Tssr138960 16 70504335 to 70504351 16 + TSS region transcription start site region 138960
Tssr138961 16 70504408 to 70504420 12 + TSS region transcription start site region 138961
Tssr141721 16 70517585 to 70517587 2 - TSS region transcription start site region 141721