Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 16:65199517-66139666

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58 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Arrd3 16 32704091 to 65669666 32965575 QTL age-related retinal degeneration 3
Tssr138897 16 65219384 to 65219408 24 + TSS region transcription start site region 138897
Gm49629 16 65339118 to 65339461 343 + pseudogene predicted gene, 49629
Tssr138898 16 65368351 to 65368360 9 + TSS region transcription start site region 138898
D16Mit48 16 65429310 to 65429469 159 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 48
Gm23659 16 65432137 to 65432246 109 + miRNA gene predicted gene, 23659
Tssr138899 16 65473453 to 65473458 5 + TSS region transcription start site region 138899
Tssr138900 16 65473720 to 65473736 16 + TSS region transcription start site region 138900
Tssr138901 16 65473789 to 65473805 16 + TSS region transcription start site region 138901
Tssr138902 16 65473924 to 65473939 15 + TSS region transcription start site region 138902
Tssr141689 16 65515100 to 65515105 5 - TSS region transcription start site region 141689
Gm49631 16 65520284 to 65526171 5887 - lincRNA gene predicted gene, 49631
Tssr138903 16 65520503 to 65520518 15 + TSS region transcription start site region 138903
Tssr4928 16 65520602 to 65520607 5 + TSS region transcription start site region 4928
Pou1f1 16 65520629 to 65533981 13352 + protein coding gene POU domain, class 1, transcription factor 1
Tssr138904 16 65520686 to 65520697 11 + TSS region transcription start site region 138904
Tssr138905 16 65523307 to 65523314 7 + TSS region transcription start site region 138905
Tssr138906 16 65523571 to 65523583 12 + TSS region transcription start site region 138906
Tssr138907 16 65533983 to 65533995 12 + TSS region transcription start site region 138907
Tssr138908 16 65534002 to 65534011 9 + TSS region transcription start site region 138908
Chmp2b 16 65539133 to 65562697 23564 - protein coding gene charged multivesicular body protein 2B
Cpgi8358 16 65562303 to 65563172 869 CpG island CpG island 8358
Tssr141690 16 65562638 to 65562647 9 - TSS region transcription start site region 141690
Tssr141691 16 65562667 to 65562678 11 - TSS region transcription start site region 141691
Tssr141692 16 65562686 to 65562769 83 - TSS region transcription start site region 141692
Tssr138909 16 65562784 to 65562847 63 + TSS region transcription start site region 138909
Gm36457 16 65562791 to 65563519 728 + protein coding gene predicted gene, 36457
Gm49633 16 65613122 to 65613419 297 - pseudogene predicted gene, 49633
Tssr138910 16 65649412 to 65649419 7 + TSS region transcription start site region 138910
Tssr138911 16 65665077 to 65665104 27 + TSS region transcription start site region 138911
D16Mit139 16 65669517 to 65669666 149 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 139
Lp1 16 65669666 to 6725115 -58944551 QTL lymphocyte proliferation 1
Gm41469 16 65723742 to 65735346 11604 + lncRNA gene predicted gene, 41469
Gm41470 16 65737334 to 65754356 17022 + lncRNA gene predicted gene, 41470
Gm5221 16 65793371 to 65794337 966 + pseudogene predicted gene 5221
Cpgi8359 16 65814827 to 65816039 1212 CpG island CpG island 8359
Tssr138912 16 65815067 to 65815087 20 + TSS region transcription start site region 138912
Tssr138913 16 65815169 to 65815196 27 + TSS region transcription start site region 138913
Tssr138914 16 65815198 to 65815268 70 + TSS region transcription start site region 138914
Vgll3 16 65815257 to 65866368 51111 + protein coding gene vestigial like family member 3
Tssr138915 16 65815277 to 65815286 9 + TSS region transcription start site region 138915
Tssr138916 16 65815404 to 65815409 5 + TSS region transcription start site region 138916
Tssr138917 16 65815508 to 65815522 14 + TSS region transcription start site region 138917
Tssr138918 16 65815817 to 65815841 24 + TSS region transcription start site region 138918
Tssr138919 16 65815847 to 65815860 13 + TSS region transcription start site region 138919
Tssr138920 16 65815992 to 65816005 13 + TSS region transcription start site region 138920
Tssr138921 16 65816023 to 65816038 15 + TSS region transcription start site region 138921
Tssr138922 16 65818653 to 65818659 6 + TSS region transcription start site region 138922
Tssr138923 16 65819743 to 65819745 2 + TSS region transcription start site region 138923
Tssr138924 16 65828616 to 65828625 9 + TSS region transcription start site region 138924
Tssr138925 16 65828646 to 65828670 24 + TSS region transcription start site region 138925
Tssr138926 16 65839371 to 65839407 36 + TSS region transcription start site region 138926
Tssr138927 16 65839807 to 65839811 4 + TSS region transcription start site region 138927
Gm7366 16 65914961 to 65915591 630 + pseudogene predicted gene 7366
Gm18238 16 65917947 to 65921204 3257 + pseudogene predicted gene, 18238
Gm49635 16 65947106 to 65947427 321 + pseudogene predicted gene, 49635
Gm22217 16 65961225 to 65961537 312 + unclassified non-coding RNA gene predicted gene, 22217
D16Mit120 16 66078457 to 66078797 340 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 120