Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 16:65065817-66565841

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72 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Arrd3 16 32704091 to 65669666 32965575 QTL age-related retinal degeneration 3
Htr1f 16 64924729 to 65105784 181055 - protein coding gene 5-hydroxytryptamine (serotonin) receptor 1F
D16Ium74 16 65076526 to 65076699 173 DNA segment DNA segment, Chr 16, Indiana University Medical 74
Cpgi8357 16 65105326 to 65105920 594 CpG island CpG island 8357
Tssr141687 16 65105671 to 65105679 8 - TSS region transcription start site region 141687
Tssr141688 16 65105713 to 65105727 14 - TSS region transcription start site region 141688
Gm22429 16 65170041 to 65170170 129 - snoRNA gene predicted gene, 22429
Gm34033 16 65191041 to 65191725 684 - lncRNA gene predicted gene, 34033
Gm9584 16 65195846 to 65196449 603 - pseudogene predicted gene 9584
Tssr138896 16 65198869 to 65198874 5 + TSS region transcription start site region 138896
Tssr138897 16 65219384 to 65219408 24 + TSS region transcription start site region 138897
Gm49629 16 65339118 to 65339461 343 + pseudogene predicted gene, 49629
Tssr138898 16 65368351 to 65368360 9 + TSS region transcription start site region 138898
D16Mit48 16 65429310 to 65429469 159 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 48
Gm23659 16 65432137 to 65432246 109 + miRNA gene predicted gene, 23659
Tssr138899 16 65473453 to 65473458 5 + TSS region transcription start site region 138899
Tssr138900 16 65473720 to 65473736 16 + TSS region transcription start site region 138900
Tssr138901 16 65473789 to 65473805 16 + TSS region transcription start site region 138901
Tssr138902 16 65473924 to 65473939 15 + TSS region transcription start site region 138902
Tssr141689 16 65515100 to 65515105 5 - TSS region transcription start site region 141689
Gm49631 16 65520284 to 65526171 5887 - lincRNA gene predicted gene, 49631
Tssr138903 16 65520503 to 65520518 15 + TSS region transcription start site region 138903
Tssr4928 16 65520602 to 65520607 5 + TSS region transcription start site region 4928
Pou1f1 16 65520629 to 65533981 13352 + protein coding gene POU domain, class 1, transcription factor 1
Tssr138904 16 65520686 to 65520697 11 + TSS region transcription start site region 138904
Tssr138905 16 65523307 to 65523314 7 + TSS region transcription start site region 138905
Tssr138906 16 65523571 to 65523583 12 + TSS region transcription start site region 138906
Tssr138907 16 65533983 to 65533995 12 + TSS region transcription start site region 138907
Tssr138908 16 65534002 to 65534011 9 + TSS region transcription start site region 138908
Chmp2b 16 65539133 to 65562697 23564 - protein coding gene charged multivesicular body protein 2B
Cpgi8358 16 65562303 to 65563172 869 CpG island CpG island 8358
Tssr141690 16 65562638 to 65562647 9 - TSS region transcription start site region 141690
Tssr141691 16 65562667 to 65562678 11 - TSS region transcription start site region 141691
Tssr141692 16 65562686 to 65562769 83 - TSS region transcription start site region 141692
Tssr138909 16 65562784 to 65562847 63 + TSS region transcription start site region 138909
Gm36457 16 65562791 to 65563519 728 + protein coding gene predicted gene, 36457
Gm49633 16 65613122 to 65613419 297 - pseudogene predicted gene, 49633
Tssr138910 16 65649412 to 65649419 7 + TSS region transcription start site region 138910
Tssr138911 16 65665077 to 65665104 27 + TSS region transcription start site region 138911
D16Mit139 16 65669517 to 65669666 149 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 139
Lp1 16 65669666 to 6725115 -58944551 QTL lymphocyte proliferation 1
Gm41469 16 65723742 to 65735346 11604 + lncRNA gene predicted gene, 41469
Gm41470 16 65737334 to 65754356 17022 + lncRNA gene predicted gene, 41470
Gm5221 16 65793371 to 65794337 966 + pseudogene predicted gene 5221
Cpgi8359 16 65814827 to 65816039 1212 CpG island CpG island 8359
Tssr138912 16 65815067 to 65815087 20 + TSS region transcription start site region 138912
Tssr138913 16 65815169 to 65815196 27 + TSS region transcription start site region 138913
Tssr138914 16 65815198 to 65815268 70 + TSS region transcription start site region 138914
Vgll3 16 65815257 to 65866368 51111 + protein coding gene vestigial like family member 3
Tssr138915 16 65815277 to 65815286 9 + TSS region transcription start site region 138915
Tssr138916 16 65815404 to 65815409 5 + TSS region transcription start site region 138916
Tssr138917 16 65815508 to 65815522 14 + TSS region transcription start site region 138917
Tssr138918 16 65815817 to 65815841 24 + TSS region transcription start site region 138918
Tssr138919 16 65815847 to 65815860 13 + TSS region transcription start site region 138919
Tssr138920 16 65815992 to 65816005 13 + TSS region transcription start site region 138920
Tssr138921 16 65816023 to 65816038 15 + TSS region transcription start site region 138921
Tssr138922 16 65818653 to 65818659 6 + TSS region transcription start site region 138922
Tssr138923 16 65819743 to 65819745 2 + TSS region transcription start site region 138923
Tssr138924 16 65828616 to 65828625 9 + TSS region transcription start site region 138924
Tssr138925 16 65828646 to 65828670 24 + TSS region transcription start site region 138925
Tssr138926 16 65839371 to 65839407 36 + TSS region transcription start site region 138926
Tssr138927 16 65839807 to 65839811 4 + TSS region transcription start site region 138927
Gm7366 16 65914961 to 65915591 630 + pseudogene predicted gene 7366
Gm18238 16 65917947 to 65921204 3257 + pseudogene predicted gene, 18238
Gm49635 16 65947106 to 65947427 321 + pseudogene predicted gene, 49635
Gm22217 16 65961225 to 65961537 312 + unclassified non-coding RNA gene predicted gene, 22217
D16Mit120 16 66078457 to 66078797 340 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 120
Gm22448 16 66254786 to 66254892 106 + snRNA gene predicted gene, 22448
Tssr138928 16 66272675 to 66272678 3 + TSS region transcription start site region 138928
Tssr138929 16 66288543 to 66288546 3 + TSS region transcription start site region 138929
Gm18019 16 66319515 to 66320069 554 - pseudogene predicted gene, 18019
D16Mit149 16 66487250 to 66487374 124 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 149