Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 16:64099412-67199419

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120 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Arrd3 16 32704091 to 65669666 32965575 QTL age-related retinal degeneration 3
Cpgi8354 16 64241003 to 64241180 177 CpG island CpG island 8354
D16Ium56 16 64247447 to 64247822 375 DNA segment DNA segment, Chr 16, Indiana University Medical 56
Csnka2ip 16 64477810 to 64602366 124556 - protein coding gene casein kinase 2, alpha prime interacting protein
Tssr141676 16 64479234 to 64479240 6 - TSS region transcription start site region 141676
D16Mit173 16 64592052 to 64592170 118 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 173
Tssr141677 16 64602323 to 64602363 40 - TSS region transcription start site region 141677
4930453N24Rik 16 64762205 to 64771156 8951 - protein coding gene RIKEN cDNA 4930453N24 gene
Cpgi8355 16 64770432 to 64771334 902 CpG island CpG island 8355
Tssr141678 16 64770916 to 64770971 55 - TSS region transcription start site region 141678
Tssr141679 16 64771125 to 64771136 11 - TSS region transcription start site region 141679
Tssr141680 16 64771146 to 64771184 38 - TSS region transcription start site region 141680
Zfp654 16 64780347 to 64851652 71305 - protein coding gene zinc finger protein 654
2810421E14Rik 16 64821079 to 64822242 1163 unclassified non-coding RNA gene RIKEN cDNA 2810421E14 gene
Cpgi8356 16 64850843 to 64852997 2154 CpG island CpG island 8356
Tssr141681 16 64851433 to 64851446 13 - TSS region transcription start site region 141681
Tssr141682 16 64851653 to 64851754 101 - TSS region transcription start site region 141682
Tssr138888 16 64851954 to 64851959 5 + TSS region transcription start site region 138888
Tssr138889 16 64851971 to 64851982 11 + TSS region transcription start site region 138889
Tssr138890 16 64851991 to 64851996 5 + TSS region transcription start site region 138890
Tssr138891 16 64851998 to 64852074 76 + TSS region transcription start site region 138891
Cggbp1 16 64852001 to 64859491 7490 + protein coding gene CGG triplet repeat binding protein 1
Tssr138892 16 64852308 to 64852350 42 + TSS region transcription start site region 138892
Tssr138893 16 64852356 to 64852388 32 + TSS region transcription start site region 138893
Tssr141683 16 64852521 to 64852543 22 - TSS region transcription start site region 141683
Tssr141684 16 64852548 to 64852562 14 - TSS region transcription start site region 141684
Tssr138894 16 64852816 to 64852864 48 + TSS region transcription start site region 138894
Gm33971 16 64871773 to 64874346 2573 - lncRNA gene predicted gene, 33971
Tssr141685 16 64873929 to 64873942 13 - TSS region transcription start site region 141685
Tssr138895 16 64911196 to 64911198 2 + TSS region transcription start site region 138895
Gm9061 16 64911273 to 64912278 1005 + pseudogene predicted gene 9061
Gm16385 16 64917983 to 64919084 1101 - pseudogene predicted gene 16385
Gm23374 16 64918222 to 64918305 83 - miRNA gene predicted gene, 23374
Tssr141686 16 64919107 to 64919115 8 - TSS region transcription start site region 141686
Htr1f 16 64924729 to 65105784 181055 - protein coding gene 5-hydroxytryptamine (serotonin) receptor 1F
D16Ium74 16 65076526 to 65076699 173 DNA segment DNA segment, Chr 16, Indiana University Medical 74
Cpgi8357 16 65105326 to 65105920 594 CpG island CpG island 8357
Tssr141687 16 65105671 to 65105679 8 - TSS region transcription start site region 141687
Tssr141688 16 65105713 to 65105727 14 - TSS region transcription start site region 141688
Gm22429 16 65170041 to 65170170 129 - snoRNA gene predicted gene, 22429
Gm34033 16 65191041 to 65191725 684 - lncRNA gene predicted gene, 34033
Gm9584 16 65195846 to 65196449 603 - pseudogene predicted gene 9584
Tssr138896 16 65198869 to 65198874 5 + TSS region transcription start site region 138896
Tssr138897 16 65219384 to 65219408 24 + TSS region transcription start site region 138897
Gm49629 16 65339118 to 65339461 343 + pseudogene predicted gene, 49629
Tssr138898 16 65368351 to 65368360 9 + TSS region transcription start site region 138898
D16Mit48 16 65429310 to 65429469 159 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 48
Gm23659 16 65432137 to 65432246 109 + miRNA gene predicted gene, 23659
Tssr138899 16 65473453 to 65473458 5 + TSS region transcription start site region 138899
Tssr138900 16 65473720 to 65473736 16 + TSS region transcription start site region 138900
Tssr138901 16 65473789 to 65473805 16 + TSS region transcription start site region 138901
Tssr138902 16 65473924 to 65473939 15 + TSS region transcription start site region 138902
Tssr141689 16 65515100 to 65515105 5 - TSS region transcription start site region 141689
Gm49631 16 65520284 to 65526171 5887 - lincRNA gene predicted gene, 49631
Tssr138903 16 65520503 to 65520518 15 + TSS region transcription start site region 138903
Tssr4928 16 65520602 to 65520607 5 + TSS region transcription start site region 4928
Pou1f1 16 65520629 to 65533981 13352 + protein coding gene POU domain, class 1, transcription factor 1
Tssr138904 16 65520686 to 65520697 11 + TSS region transcription start site region 138904
Tssr138905 16 65523307 to 65523314 7 + TSS region transcription start site region 138905
Tssr138906 16 65523571 to 65523583 12 + TSS region transcription start site region 138906
Tssr138907 16 65533983 to 65533995 12 + TSS region transcription start site region 138907
Tssr138908 16 65534002 to 65534011 9 + TSS region transcription start site region 138908
Chmp2b 16 65539133 to 65562697 23564 - protein coding gene charged multivesicular body protein 2B
Cpgi8358 16 65562303 to 65563172 869 CpG island CpG island 8358
Tssr141690 16 65562638 to 65562647 9 - TSS region transcription start site region 141690
Tssr141691 16 65562667 to 65562678 11 - TSS region transcription start site region 141691
Tssr141692 16 65562686 to 65562769 83 - TSS region transcription start site region 141692
Tssr138909 16 65562784 to 65562847 63 + TSS region transcription start site region 138909
Gm36457 16 65562791 to 65563519 728 + protein coding gene predicted gene, 36457
Gm49633 16 65613122 to 65613419 297 - pseudogene predicted gene, 49633
Tssr138910 16 65649412 to 65649419 7 + TSS region transcription start site region 138910
Tssr138911 16 65665077 to 65665104 27 + TSS region transcription start site region 138911
D16Mit139 16 65669517 to 65669666 149 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 139
Lp1 16 65669666 to 6725115 -58944551 QTL lymphocyte proliferation 1
Gm41469 16 65723742 to 65735346 11604 + lncRNA gene predicted gene, 41469
Gm41470 16 65737334 to 65754356 17022 + lncRNA gene predicted gene, 41470
Gm5221 16 65793371 to 65794337 966 + pseudogene predicted gene 5221
Cpgi8359 16 65814827 to 65816039 1212 CpG island CpG island 8359
Tssr138912 16 65815067 to 65815087 20 + TSS region transcription start site region 138912
Tssr138913 16 65815169 to 65815196 27 + TSS region transcription start site region 138913
Tssr138914 16 65815198 to 65815268 70 + TSS region transcription start site region 138914
Vgll3 16 65815257 to 65866368 51111 + protein coding gene vestigial like family member 3
Tssr138915 16 65815277 to 65815286 9 + TSS region transcription start site region 138915
Tssr138916 16 65815404 to 65815409 5 + TSS region transcription start site region 138916
Tssr138917 16 65815508 to 65815522 14 + TSS region transcription start site region 138917
Tssr138918 16 65815817 to 65815841 24 + TSS region transcription start site region 138918
Tssr138919 16 65815847 to 65815860 13 + TSS region transcription start site region 138919
Tssr138920 16 65815992 to 65816005 13 + TSS region transcription start site region 138920
Tssr138921 16 65816023 to 65816038 15 + TSS region transcription start site region 138921
Tssr138922 16 65818653 to 65818659 6 + TSS region transcription start site region 138922
Tssr138923 16 65819743 to 65819745 2 + TSS region transcription start site region 138923
Tssr138924 16 65828616 to 65828625 9 + TSS region transcription start site region 138924
Tssr138925 16 65828646 to 65828670 24 + TSS region transcription start site region 138925
Tssr138926 16 65839371 to 65839407 36 + TSS region transcription start site region 138926
Tssr138927 16 65839807 to 65839811 4 + TSS region transcription start site region 138927
Gm7366 16 65914961 to 65915591 630 + pseudogene predicted gene 7366
Gm18238 16 65917947 to 65921204 3257 + pseudogene predicted gene, 18238
Gm49635 16 65947106 to 65947427 321 + pseudogene predicted gene, 49635
Gm22217 16 65961225 to 65961537 312 + unclassified non-coding RNA gene predicted gene, 22217
D16Mit120 16 66078457 to 66078797 340 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 120
Gm22448 16 66254786 to 66254892 106 + snRNA gene predicted gene, 22448
Tssr138928 16 66272675 to 66272678 3 + TSS region transcription start site region 138928
Tssr138929 16 66288543 to 66288546 3 + TSS region transcription start site region 138929
Gm18019 16 66319515 to 66320069 554 - pseudogene predicted gene, 18019
D16Mit149 16 66487250 to 66487374 124 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 149
Cadm2 16 66655421 to 67620908 965487 - protein coding gene cell adhesion molecule 2
Tssr138930 16 66657107 to 66657142 35 + TSS region transcription start site region 138930
1700010K23Rik 16 66657118 to 66664626 7508 + antisense lncRNA gene RIKEN cDNA 1700010K23 gene
Tssr141693 16 66744588 to 66744601 13 - TSS region transcription start site region 141693
Tssr138931 16 66852633 to 66852635 2 + TSS region transcription start site region 138931
Tssr141694 16 66865429 to 66865432 3 - TSS region transcription start site region 141694
4933411O13Rik 16 66892503 to 66910841 18338 + antisense lncRNA gene RIKEN cDNA 4933411O13 gene
2900041H08Rik 16 66951233 to 66951412 179 unclassified gene RIKEN cDNA 2900041H08 gene
D16Mit222 16 67013694 to 67013867 173 DNA segment DNA Segment, Chr 16, Massachusetts Institute of Technology 222
Tssr141695 16 67016255 to 67016258 3 - TSS region transcription start site region 141695
D16Mit105 16 67068507 to 67068621 114 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 105
Tssr141696 16 67072627 to 67072630 3 - TSS region transcription start site region 141696
Tssr141697 16 67112636 to 67112644 8 - TSS region transcription start site region 141697
Tssr141698 16 67182834 to 67182838 4 - TSS region transcription start site region 141698
Tssr141699 16 67197537 to 67197542 5 - TSS region transcription start site region 141699