Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 16:6322684-8112712

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94 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Rbfox1 16 5885355 to 7411526 1526171 + protein coding gene RNA binding protein, fox-1 homolog (C. elegans) 1
Cpgi7935 16 6348452 to 6349290 838 CpG island CpG island 7935
Tssr136930 16 6348505 to 6348521 16 + TSS region transcription start site region 136930
Tssr136931 16 6348524 to 6348549 25 + TSS region transcription start site region 136931
Tssr136932 16 6348656 to 6348680 24 + TSS region transcription start site region 136932
Tssr136933 16 6348701 to 6348722 21 + TSS region transcription start site region 136933
Tssr136934 16 6348732 to 6348770 38 + TSS region transcription start site region 136934
Tssr136935 16 6349021 to 6349095 74 + TSS region transcription start site region 136935
Tssr4784 16 6349109 to 6349116 7 + TSS region transcription start site region 4784
Tssr136936 16 6349119 to 6349145 26 + TSS region transcription start site region 136936
Tssr136937 16 6349161 to 6349172 11 + TSS region transcription start site region 136937
Tssr136938 16 6460422 to 6460446 24 + TSS region transcription start site region 136938
Tssr136939 16 6503177 to 6503183 6 + TSS region transcription start site region 136939
Tssr136940 16 6517966 to 6517977 11 + TSS region transcription start site region 136940
D16Mit220 16 6518076 to 6518298 222 DNA segment DNA Segment, Chr 16, Massachusetts Institute of Technology 220
Tssr136941 16 6523577 to 6523587 10 + TSS region transcription start site region 136941
Tssr136942 16 6563113 to 6563127 14 + TSS region transcription start site region 136942
D16Mit9 16 6659145 to 6659287 142 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 9
Tssr136943 16 6680719 to 6680760 41 + TSS region transcription start site region 136943
Tssr136944 16 6698219 to 6698224 5 + TSS region transcription start site region 136944
D16Mit160 16 6725115 to 6725239 124 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 160
Tssr139851 16 6745482 to 6745495 13 - TSS region transcription start site region 139851
D16Mit80 16 6748145 to 6748276 131 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 80
Tssr136945 16 6816116 to 6816132 16 + TSS region transcription start site region 136945
Tssr136946 16 6824768 to 6824772 4 + TSS region transcription start site region 136946
D16Mit192 16 6832724 to 6832830 106 DNA segment DNA Segment, Chr 16, Massachusetts Institute of Technology 192
D16Mit192.2 16 6832843 to 6832974 131 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 192.2
Tssr136947 16 6840420 to 6840440 20 + TSS region transcription start site region 136947
Tssr139852 16 6842123 to 6842125 2 - TSS region transcription start site region 139852
Tssr136948 16 6842385 to 6842387 2 + TSS region transcription start site region 136948
Tssr136949 16 6863000 to 6863002 2 + TSS region transcription start site region 136949
Tssr136950 16 6889573 to 6889579 6 + TSS region transcription start site region 136950
Tssr136951 16 6914260 to 6914269 9 + TSS region transcription start site region 136951
Tssr136952 16 6914402 to 6914413 11 + TSS region transcription start site region 136952
Tssr136953 16 6935598 to 6935606 8 + TSS region transcription start site region 136953
Tssr136954 16 6948706 to 6948724 18 + TSS region transcription start site region 136954
Tssr136955 16 6986699 to 6986708 9 + TSS region transcription start site region 136955
Tssr136956 16 6996617 to 6996629 12 + TSS region transcription start site region 136956
Tssr136957 16 6996642 to 6996655 13 + TSS region transcription start site region 136957
Tssr136958 16 6996693 to 6996722 29 + TSS region transcription start site region 136958
Tssr136959 16 7009025 to 7009034 9 + TSS region transcription start site region 136959
Tssr139853 16 7038516 to 7038520 4 - TSS region transcription start site region 139853
Tssr4785 16 7039393 to 7039421 28 + TSS region transcription start site region 4785
Tssr136960 16 7039569 to 7039582 13 + TSS region transcription start site region 136960
Tssr136961 16 7039599 to 7039616 17 + TSS region transcription start site region 136961
Tssr136962 16 7039702 to 7039734 32 + TSS region transcription start site region 136962
Cpgi7936 16 7039860 to 7040052 192 CpG island CpG island 7936
Tssr136963 16 7039893 to 7039924 31 + TSS region transcription start site region 136963
Tssr136964 16 7069728 to 7069737 9 + TSS region transcription start site region 136964
Tssr136965 16 7069738 to 7069749 11 + TSS region transcription start site region 136965
Tssr136966 16 7069788 to 7069793 5 + TSS region transcription start site region 136966
Tssr136967 16 7069797 to 7069812 15 + TSS region transcription start site region 136967
Tssr136968 16 7069825 to 7069846 21 + TSS region transcription start site region 136968
Tssr136969 16 7069849 to 7069870 21 + TSS region transcription start site region 136969
Tssr136970 16 7069871 to 7069890 19 + TSS region transcription start site region 136970
Tssr136971 16 7069949 to 7069958 9 + TSS region transcription start site region 136971
Tssr4786 16 7070016 to 7070023 7 + TSS region transcription start site region 4786
Tssr136972 16 7080738 to 7080742 4 + TSS region transcription start site region 136972
D16Mit159 16 7134724 to 7134840 116 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 159
Tssr136973 16 7144695 to 7144708 13 + TSS region transcription start site region 136973
Tssr136974 16 7149767 to 7149795 28 + TSS region transcription start site region 136974
Tssr136975 16 7149911 to 7149916 5 + TSS region transcription start site region 136975
Tssr136976 16 7189468 to 7189471 3 + TSS region transcription start site region 136976
Tssr136977 16 7193717 to 7193747 30 + TSS region transcription start site region 136977
Tssr136978 16 7217661 to 7217671 10 + TSS region transcription start site region 136978
Tssr136979 16 7217684 to 7217712 28 + TSS region transcription start site region 136979
Tssr136980 16 7217715 to 7217724 9 + TSS region transcription start site region 136980
Tssr136981 16 7217728 to 7217733 5 + TSS region transcription start site region 136981
Tssr136982 16 7217752 to 7217760 8 + TSS region transcription start site region 136982
Tssr136983 16 7224305 to 7224317 12 + TSS region transcription start site region 136983
Tssr136984 16 7224324 to 7224335 11 + TSS region transcription start site region 136984
Tssr136985 16 7224408 to 7224417 9 + TSS region transcription start site region 136985
Tssr136986 16 7278189 to 7278225 36 + TSS region transcription start site region 136986
D16Mit131.3 16 7318951 to 7319083 132 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 131.3
D16Mit131 16 7319042 to 7319181 139 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 131
D16Dcr2 16 7319072 to 7319182 110 DNA segment DNA Segment, Chr 16, Derry C. Roopenian 2
D16Mit163 16 7328633 to 7328747 114 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 163
Tssr136987 16 7341519 to 7341524 5 + TSS region transcription start site region 136987
Tssr136988 16 7409781 to 7409794 13 + TSS region transcription start site region 136988
D16Mit122 16 7445880 to 7445989 109 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 122
Heal11 16 7445880 to 7445989 109 QTL wound healing/regeneration 11
Nhdlq10 16 7445880 to 7445989 109 QTL non-HDL QTL 10
Gm49533 16 7708736 to 7709066 330 - pseudogene predicted gene, 49533
Tssr4787 16 7767870 to 7767879 9 + TSS region transcription start site region 4787
Gm29854 16 7767891 to 7771595 3704 + lncRNA gene predicted gene, 29854
Tssr136989 16 7828205 to 7828208 3 + TSS region transcription start site region 136989
Gm49534 16 7870102 to 7879859 9757 + lincRNA gene predicted gene, 49534
Tssr139854 16 7951666 to 7951676 10 - TSS region transcription start site region 139854
D16Mit142 16 7983236 to 7983378 142 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 142
Gm49535 16 8103374 to 8103788 414 - pseudogene predicted gene, 49535
Dice1a 16 11139842 to 7983236 -3156606 QTL determination of interleukin 4 commitment 1a
Nilac10 16 29406653 to 7319042 -22087611 QTL nicotine induced locomotor activity 10
Bbq1 16 35200846 to 6659145 -28541701 QTL brain and behavior QTL 1
Lp1 16 65669666 to 6725115 -58944551 QTL lymphocyte proliferation 1