Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 16:62780218-64629157

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47 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Nsun3 16 62732444 to 62786796 54352 - protein coding gene NOL1/NOP2/Sun domain family member 3
Cpgi8349 16 62786451 to 62787170 719 CpG island CpG island 8349
Tssr141665 16 62786742 to 62786797 55 - TSS region transcription start site region 141665
Arl13b 16 62793685 to 62847040 53355 - protein coding gene ADP-ribosylation factor-like 13B
Gm25986 16 62808349 to 62808416 67 + miRNA gene predicted gene, 25986
Tssr141666 16 62811983 to 62811994 11 - TSS region transcription start site region 141666
Stx19 16 62814676 to 62822722 8046 + protein coding gene syntaxin 19
Tssr138879 16 62814687 to 62814703 16 + TSS region transcription start site region 138879
Tssr138880 16 62814720 to 62814731 11 + TSS region transcription start site region 138880
Tssr138881 16 62814838 to 62814859 21 + TSS region transcription start site region 138881
D16Mit201 16 62837628 to 62837739 111 DNA segment DNA Segment, Chr 16, Massachusetts Institute of Technology 201
Cpgi8350 16 62846522 to 62847221 699 CpG island CpG island 8350
Tssr141667 16 62846844 to 62846873 29 - TSS region transcription start site region 141667
Tssr141668 16 62846947 to 62847005 58 - TSS region transcription start site region 141668
Tssr141669 16 62847008 to 62847041 33 - TSS region transcription start site region 141669
Cpgi8351 16 62854124 to 62854652 528 CpG island CpG island 8351
Tssr138882 16 62854281 to 62854288 7 + TSS region transcription start site region 138882
Tssr138883 16 62854299 to 62854310 11 + TSS region transcription start site region 138883
Pros1 16 62854307 to 62929346 75039 + protein coding gene protein S (alpha)
Tssr138884 16 62854317 to 62854333 16 + TSS region transcription start site region 138884
Tssr138885 16 62854334 to 62854345 11 + TSS region transcription start site region 138885
Tssr138886 16 62854347 to 62854361 14 + TSS region transcription start site region 138886
Tssr138887 16 62867080 to 62867107 27 + TSS region transcription start site region 138887
Tssr141670 16 62881432 to 62881439 7 - TSS region transcription start site region 141670
Gm18870 16 63005462 to 63006779 1317 + pseudogene predicted gene, 18870
Gm49621 16 63111690 to 63112185 495 + pseudogene predicted gene, 49621
Gm33912 16 63211300 to 63217284 5984 - lincRNA gene predicted gene, 33912
Gm49622 16 63468501 to 63492117 23616 - lincRNA gene predicted gene, 49622
Epha3 16 63545218 to 63864157 318939 - protein coding gene Eph receptor A3
Tssr141671 16 63600555 to 63600556 1 - TSS region transcription start site region 141671
Gm22769 16 63747437 to 63747534 97 - snRNA gene predicted gene, 22769
Tssr141672 16 63758450 to 63758452 2 - TSS region transcription start site region 141672
Gm41466 16 63825615 to 63840385 14770 - lncRNA gene predicted gene, 41466
Cpgi8352 16 63857013 to 63857437 424 CpG island CpG island 8352
Cpgi8353 16 63863820 to 63864473 653 CpG island CpG island 8353
Tssr141673 16 63864063 to 63864072 9 - TSS region transcription start site region 141673
Tssr141674 16 63864097 to 63864113 16 - TSS region transcription start site region 141674
Tssr141675 16 63864114 to 63864182 68 - TSS region transcription start site region 141675
D16Ium66 16 63901841 to 63901967 126 DNA segment DNA segment, Chr 16, Indiana University Medical 66
Gm49627 16 63954086 to 63955130 1044 - pseudogene predicted gene, 49627
D16Nds1 16 63994065 to 63994202 137 DNA segment DNA segment, Chr 16, Nuffield Department of Surgery 1
Cpgi8354 16 64241003 to 64241180 177 CpG island CpG island 8354
D16Ium56 16 64247447 to 64247822 375 DNA segment DNA segment, Chr 16, Indiana University Medical 56
Csnka2ip 16 64477810 to 64602366 124556 - protein coding gene casein kinase 2, alpha prime interacting protein
Tssr141676 16 64479234 to 64479240 6 - TSS region transcription start site region 141676
D16Mit173 16 64592052 to 64592170 118 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 173
Tssr141677 16 64602323 to 64602363 40 - TSS region transcription start site region 141677