Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 16:61200454-63180458

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48 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
D16Ium64 16 61262603 to 61262709 106 DNA segment DNA segment, Chr 16, Indiana University Medical 64
Gm49610 16 61358837 to 61359252 415 + pseudogene predicted gene, 49610
n-R5s37 16 61373027 to 61373144 117 - rRNA gene nuclear encoded rRNA 5S 37
Gm9027 16 61377256 to 61377916 660 + pseudogene predicted gene 9027
Tssr141664 16 61389933 to 61389936 3 - TSS region transcription start site region 141664
Gm17192 16 61461005 to 61461472 467 + pseudogene predicted gene 17192
D16Ium40 16 61546390 to 61546666 276 DNA segment DNA segment, Chr 16, Indiana University Medical 40
D16Mit47 16 61562987 to 61563143 156 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 47
Remslp3 16 61562987 to 61563143 156 QTL rapid eye movement sleep 3
Imraq3 16 61562987 to 61563143 156 QTL immune response to AAV2 QTL 3
D16Ium67 16 61569334 to 61569532 198 DNA segment DNA segment, Chr 16, Indiana University Medical 67
D16Mit216 16 61833809 to 61833982 173 DNA segment DNA Segment, Chr 16 Massachusetts Institute of Technology 216
Gm18772 16 61846721 to 61847846 1125 + pseudogene predicted gene, 18772
Tssr4926 16 61947319 to 61947320 1 - TSS region transcription start site region 4926
Gm49615 16 62097461 to 62104929 7468 + lincRNA gene predicted gene, 49615
Tssr4927 16 62190454 to 62190458 4 + TSS region transcription start site region 4927
Gm33797 16 62329132 to 62355965 26833 - lncRNA gene predicted gene, 33797
D16Mit172 16 62342022 to 62342196 174 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 172
Gm24164 16 62571036 to 62571139 103 + snRNA gene predicted gene, 24164
Gm19000 16 62601809 to 62602476 667 + pseudogene predicted gene, 19000
D16Ium77 16 62620268 to 62620445 177 DNA segment DNA segment, Chr 16, Indiana University Medical 77
Gm9816 16 62717037 to 62718450 1413 + pseudogene predicted pseudogene 9816
Nsun3 16 62732444 to 62786796 54352 - protein coding gene NOL1/NOP2/Sun domain family member 3
Cpgi8349 16 62786451 to 62787170 719 CpG island CpG island 8349
Tssr141665 16 62786742 to 62786797 55 - TSS region transcription start site region 141665
Arl13b 16 62793685 to 62847040 53355 - protein coding gene ADP-ribosylation factor-like 13B
Gm25986 16 62808349 to 62808416 67 + miRNA gene predicted gene, 25986
Tssr141666 16 62811983 to 62811994 11 - TSS region transcription start site region 141666
Stx19 16 62814676 to 62822722 8046 + protein coding gene syntaxin 19
Tssr138879 16 62814687 to 62814703 16 + TSS region transcription start site region 138879
Tssr138880 16 62814720 to 62814731 11 + TSS region transcription start site region 138880
Tssr138881 16 62814838 to 62814859 21 + TSS region transcription start site region 138881
D16Mit201 16 62837628 to 62837739 111 DNA segment DNA Segment, Chr 16, Massachusetts Institute of Technology 201
Cpgi8350 16 62846522 to 62847221 699 CpG island CpG island 8350
Tssr141667 16 62846844 to 62846873 29 - TSS region transcription start site region 141667
Tssr141668 16 62846947 to 62847005 58 - TSS region transcription start site region 141668
Tssr141669 16 62847008 to 62847041 33 - TSS region transcription start site region 141669
Cpgi8351 16 62854124 to 62854652 528 CpG island CpG island 8351
Tssr138882 16 62854281 to 62854288 7 + TSS region transcription start site region 138882
Tssr138883 16 62854299 to 62854310 11 + TSS region transcription start site region 138883
Pros1 16 62854307 to 62929346 75039 + protein coding gene protein S (alpha)
Tssr138884 16 62854317 to 62854333 16 + TSS region transcription start site region 138884
Tssr138885 16 62854334 to 62854345 11 + TSS region transcription start site region 138885
Tssr138886 16 62854347 to 62854361 14 + TSS region transcription start site region 138886
Tssr138887 16 62867080 to 62867107 27 + TSS region transcription start site region 138887
Tssr141670 16 62881432 to 62881439 7 - TSS region transcription start site region 141670
Gm18870 16 63005462 to 63006779 1317 + pseudogene predicted gene, 18870
Gm49621 16 63111690 to 63112185 495 + pseudogene predicted gene, 49621