Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 16:59440243-61770254

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73 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gabrr3 16 59407382 to 59461739 54357 + protein coding gene gamma-aminobutyric acid (GABA) receptor, rho 3
Orai2-ps 16 59457584 to 59460790 3206 + pseudogene ORAI calcium release-activated calcium modulator 2, pseudogene
Tssr138873 16 59457605 to 59457627 22 + TSS region transcription start site region 138873
1700022E09Rik 16 59466872 to 59469238 2366 - lincRNA gene RIKEN cDNA 1700022E09 gene
Cpgi8345 16 59471644 to 59472257 613 CpG island CpG island 8345
Riox2 16 59471775 to 59492461 20686 + protein coding gene ribosomal oxygenase 2
Tssr138874 16 59471778 to 59471861 83 + TSS region transcription start site region 138874
Tssr4921 16 59471863 to 59471875 12 + TSS region transcription start site region 4921
Crybg3 16 59490775 to 59600979 110204 - protein coding gene beta-gamma crystallin domain containing 3
Tssr141642 16 59492447 to 59492449 2 - TSS region transcription start site region 141642
Tssr141643 16 59495770 to 59495780 10 - TSS region transcription start site region 141643
Tssr4922 16 59505825 to 59505827 2 + TSS region transcription start site region 4922
Tssr138875 16 59538730 to 59538731 1 + TSS region transcription start site region 138875
Tssr141644 16 59557363 to 59557371 8 - TSS region transcription start site region 141644
Tssr141645 16 59557373 to 59557380 7 - TSS region transcription start site region 141645
Tssr141646 16 59557388 to 59557398 10 - TSS region transcription start site region 141646
Tssr141647 16 59557402 to 59557441 39 - TSS region transcription start site region 141647
Tssr4923 16 59557489 to 59557504 15 + TSS region transcription start site region 4923
Tssr4924 16 59559216 to 59559222 6 + TSS region transcription start site region 4924
Tssr141648 16 59600144 to 59600148 4 - TSS region transcription start site region 141648
Cpgi8346 16 59600354 to 59601475 1121 CpG island CpG island 8346
Tssr141649 16 59600979 to 59601059 80 - TSS region transcription start site region 141649
Arl6 16 59613321 to 59639411 26090 - protein coding gene ADP-ribosylation factor-like 6
A930013N22Rik 16 59615992 to 59616902 910 unclassified gene RIKEN cDNA A930013N22 gene
Tssr141650 16 59632525 to 59632541 16 - TSS region transcription start site region 141650
Tssr141651 16 59632550 to 59632555 5 - TSS region transcription start site region 141651
Tssr141652 16 59632569 to 59632583 14 - TSS region transcription start site region 141652
Tssr138876 16 59636941 to 59636949 8 + TSS region transcription start site region 138876
4930547E14Rik 16 59636945 to 59672993 36048 + lncRNA gene RIKEN cDNA 4930547E14 gene
Cpgi8347 16 59638692 to 59639598 906 CpG island CpG island 8347
Tssr141653 16 59639124 to 59639191 67 - TSS region transcription start site region 141653
Tssr138877 16 59639193 to 59639211 18 + TSS region transcription start site region 138877
Tssr141654 16 59639382 to 59639445 63 - TSS region transcription start site region 141654
9330168O09Rik 16 59642028 to 59646309 4281 unclassified gene RIKEN cDNA 9330168O09 gene
Epha6 16 59653483 to 60605531 952048 - protein coding gene Eph receptor A6
Tssr138878 16 60042349 to 60042351 2 + TSS region transcription start site region 138878
D16Mit92 16 60187187 to 60187335 148 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 92
Gm24755 16 60369054 to 60369163 109 - miRNA gene predicted gene, 24755
Gm4660 16 60397920 to 60398322 402 - pseudogene predicted gene 4660
D16Mit185.2 16 60476833 to 60476989 156 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 185.2
D16Mit185 16 60476985 to 60477070 85 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 185
D16Mit148 16 60490378 to 60490482 104 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 148
Gm9017 16 60604766 to 60611236 6470 + antisense lncRNA gene predicted gene 9017
Cpgi8348 16 60604937 to 60606609 1672 CpG island CpG island 8348
Tssr141655 16 60605226 to 60605229 3 - TSS region transcription start site region 141655
Tssr141656 16 60605243 to 60605254 11 - TSS region transcription start site region 141656
Tssr141657 16 60605271 to 60605291 20 - TSS region transcription start site region 141657
Tssr141658 16 60605545 to 60605559 14 - TSS region transcription start site region 141658
Tssr141659 16 60605591 to 60605609 18 - TSS region transcription start site region 141659
Tssr141660 16 60605611 to 60605643 32 - TSS region transcription start site region 141660
Tssr141661 16 60606467 to 60606487 20 - TSS region transcription start site region 141661
Tssr141662 16 60606488 to 60606517 29 - TSS region transcription start site region 141662
Gm27001 16 60628608 to 60629543 935 + pseudogene predicted gene, 27001
Gm49609 16 60636432 to 60636586 154 - pseudogene predicted gene, 49609
Gm27784 16 60699179 to 60699291 112 - miRNA gene predicted gene, 27784
D16Mit77 16 60880607 to 60880744 137 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 77
Tssr141663 16 61056367 to 61056380 13 - TSS region transcription start site region 141663
Tssr4925 16 61056392 to 61056402 10 - TSS region transcription start site region 4925
Gm17065 16 61058761 to 61058999 238 + pseudogene predicted gene 17065
Gm23852 16 61070018 to 61070094 76 + snoRNA gene predicted gene, 23852
Gm17054 16 61105150 to 61105408 258 + pseudogene predicted gene 17054
D16Mit115 16 61192468 to 61192559 91 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 115
D16Ium64 16 61262603 to 61262709 106 DNA segment DNA segment, Chr 16, Indiana University Medical 64
Gm49610 16 61358837 to 61359252 415 + pseudogene predicted gene, 49610
n-R5s37 16 61373027 to 61373144 117 - rRNA gene nuclear encoded rRNA 5S 37
Gm9027 16 61377256 to 61377916 660 + pseudogene predicted gene 9027
Tssr141664 16 61389933 to 61389936 3 - TSS region transcription start site region 141664
Gm17192 16 61461005 to 61461472 467 + pseudogene predicted gene 17192
D16Ium40 16 61546390 to 61546666 276 DNA segment DNA segment, Chr 16, Indiana University Medical 40
Remslp3 16 61562987 to 61563143 156 QTL rapid eye movement sleep 3
D16Mit47 16 61562987 to 61563143 156 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 47
Imraq3 16 61562987 to 61563143 156 QTL immune response to AAV2 QTL 3
D16Ium67 16 61569334 to 61569532 198 DNA segment DNA segment, Chr 16, Indiana University Medical 67