Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 16:58406647-59930454

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146 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
4930461C15Rik 16 58404878 to 58408276 3398 - lincRNA gene RIKEN cDNA 4930461C15 gene
Cpgi8341 16 58408060 to 58409364 1304 CpG island CpG island 8341
Tssr141612 16 58408318 to 58408327 9 - TSS region transcription start site region 141612
Dcbld2 16 58408443 to 58469727 61284 + protein coding gene discoidin, CUB and LCCL domain containing 2
Tssr138849 16 58408481 to 58408523 42 + TSS region transcription start site region 138849
Tssr141613 16 58415315 to 58415327 12 - TSS region transcription start site region 141613
Tssr138850 16 58415474 to 58415483 9 + TSS region transcription start site region 138850
Tssr138851 16 58415598 to 58415607 9 + TSS region transcription start site region 138851
D16Ertd88e 16 58417289 to 58417503 214 DNA segment DNA segment, Chr 16, ERATO Doi 88, expressed
Tssr138852 16 58436582 to 58436598 16 + TSS region transcription start site region 138852
Tssr138853 16 58458323 to 58458364 41 + TSS region transcription start site region 138853
Tssr138854 16 58461806 to 58461820 14 + TSS region transcription start site region 138854
Tssr138855 16 58465486 to 58465487 1 + TSS region transcription start site region 138855
Tssr138856 16 58466278 to 58466281 3 + TSS region transcription start site region 138856
St3gal6 16 58469742 to 58524253 54511 - protein coding gene ST3 beta-galactoside alpha-2,3-sialyltransferase 6
Gm33475 16 58475952 to 58483165 7213 + lncRNA gene predicted gene, 33475
Tssr141614 16 58479174 to 58479186 12 - TSS region transcription start site region 141614
Tssr138857 16 58498708 to 58498719 11 + TSS region transcription start site region 138857
Tssr141615 16 58499333 to 58499347 14 - TSS region transcription start site region 141615
Tssr141616 16 58499349 to 58499362 13 - TSS region transcription start site region 141616
Tssr141617 16 58499382 to 58499402 20 - TSS region transcription start site region 141617
Tssr141618 16 58499819 to 58499841 22 - TSS region transcription start site region 141618
Tssr4919 16 58499847 to 58499857 10 - TSS region transcription start site region 4919
Tssr4920 16 58499873 to 58499885 12 - TSS region transcription start site region 4920
Tssr141619 16 58507604 to 58507633 29 - TSS region transcription start site region 141619
Tssr141620 16 58507641 to 58507662 21 - TSS region transcription start site region 141620
Tssr141621 16 58507901 to 58507918 17 - TSS region transcription start site region 141621
Tssr141622 16 58515833 to 58515836 3 - TSS region transcription start site region 141622
Cpgi8342 16 58522703 to 58523711 1008 CpG island CpG island 8342
Tssr141623 16 58523302 to 58523342 40 - TSS region transcription start site region 141623
Tssr141624 16 58523349 to 58523361 12 - TSS region transcription start site region 141624
Tssr141625 16 58523496 to 58523502 6 - TSS region transcription start site region 141625
Tssr141626 16 58523504 to 58523520 16 - TSS region transcription start site region 141626
Tssr141627 16 58523522 to 58523538 16 - TSS region transcription start site region 141627
Tssr141628 16 58523541 to 58523592 51 - TSS region transcription start site region 141628
Tssr141629 16 58523614 to 58523624 10 - TSS region transcription start site region 141629
Tssr141630 16 58523716 to 58523730 14 - TSS region transcription start site region 141630
Tssr141631 16 58523758 to 58523810 52 - TSS region transcription start site region 141631
Tssr141632 16 58524164 to 58524179 15 - TSS region transcription start site region 141632
Tssr141633 16 58524187 to 58524198 11 - TSS region transcription start site region 141633
Tssr141634 16 58524214 to 58524227 13 - TSS region transcription start site region 141634
Tssr141635 16 58524239 to 58524249 10 - TSS region transcription start site region 141635
Gm20942 16 58555117 to 58555705 588 - pseudogene predicted gene, 20942
Tssr141636 16 58555749 to 58555752 3 - TSS region transcription start site region 141636
Gm813 16 58613686 to 58616978 3292 - protein coding gene predicted gene 813
Tssr141637 16 58616973 to 58616979 6 - TSS region transcription start site region 141637
Tssr138858 16 58622617 to 58622632 15 + TSS region transcription start site region 138858
E330017A01Rik 16 58635262 to 58638403 3141 - protein coding gene RIKEN cDNA E330017A01 gene
Tssr141638 16 58638391 to 58638410 19 - TSS region transcription start site region 141638
Gm49701 16 58651490 to 58655244 3754 - lincRNA gene predicted gene, 49701
Gm41464 16 58657478 to 58662146 4668 - lncRNA gene predicted gene, 41464
Tssr138859 16 58662094 to 58662112 18 + TSS region transcription start site region 138859
Cpgi8343 16 58669953 to 58670996 1043 CpG island CpG island 8343
Tssr138860 16 58670050 to 58670090 40 + TSS region transcription start site region 138860
Cpox 16 58670208 to 58680391 10183 + protein coding gene coproporphyrinogen oxidase
Tssr138861 16 58670235 to 58670246 11 + TSS region transcription start site region 138861
Tssr138862 16 58670262 to 58670362 100 + TSS region transcription start site region 138862
Tssr138863 16 58670367 to 58670374 7 + TSS region transcription start site region 138863
Tssr138864 16 58670506 to 58670555 49 + TSS region transcription start site region 138864
Tssr138865 16 58670741 to 58670764 23 + TSS region transcription start site region 138865
Tssr138866 16 58677785 to 58677825 40 + TSS region transcription start site region 138866
Tssr138867 16 58677833 to 58677844 11 + TSS region transcription start site region 138867
Tssr138868 16 58679702 to 58679723 21 + TSS region transcription start site region 138868
Gpr15 16 58717435 to 58718724 1289 - protein coding gene G protein-coupled receptor 15
Tssr141639 16 58718769 to 58718783 14 - TSS region transcription start site region 141639
Tssr141640 16 58718865 to 58718891 26 - TSS region transcription start site region 141640
Tssr138869 16 58726339 to 58726349 10 + TSS region transcription start site region 138869
Tssr138870 16 58726369 to 58726375 6 + TSS region transcription start site region 138870
Cpgi8344 16 58727818 to 58728640 822 CpG island CpG island 8344
Cldnd1 16 58727910 to 58734247 6337 + protein coding gene claudin domain containing 1
Tssr138871 16 58727997 to 58728059 62 + TSS region transcription start site region 138871
Tssr138872 16 58733770 to 58733788 18 + TSS region transcription start site region 138872
Gm27564 16 58749589 to 58749684 95 - miRNA gene predicted gene, 27564
Gm26019 16 58751478 to 58751596 118 - snoRNA gene predicted gene, 26019
Olfr172 16 58760152 to 58761240 1088 - protein coding gene olfactory receptor 172
D16Ium60 16 58762983 to 58763137 154 DNA segment DNA segment, Chr 16, Indiana University Medical 60
Olfr173 16 58796779 to 58797942 1163 - protein coding gene olfactory receptor 173
Olfr175-ps1 16 58823781 to 58826761 2980 - protein coding gene olfactory receptor 175, pseudogene 1
Olfr177 16 58872219 to 58874669 2450 - protein coding gene olfactory receptor 177
Olfr178 16 58889259 to 58890218 959 - protein coding gene olfactory receptor 178
Olfr180 16 58915686 to 58918486 2800 - protein coding gene olfactory receptor 180
Olfr181 16 58925557 to 58928644 3087 - protein coding gene olfactory receptor 181
Olfr182-ps1 16 58960100 to 58960883 783 - pseudogene olfactory receptor 182, pseudogene 1
Gm45071 16 58960203 to 58960773 570 + pseudogene predicted gene 45071
Olfr183 16 58995357 to 59001441 6084 + protein coding gene olfactory receptor 183
Olfr184-ps1 16 59006586 to 59007417 831 - pseudogene olfactory receptor 184, pseudogene 1
Olfr185-ps1 16 59022096 to 59022863 767 - pseudogene olfactory receptor 185, pseudogene 1
Olfr186 16 59026976 to 59027905 929 - protein coding gene olfactory receptor 186
Olfr187 16 59035780 to 59039749 3969 - protein coding gene olfactory receptor 187
Olfr188-ps1 16 59050386 to 59051295 909 - pseudogene olfactory receptor 188, pseudogene 1
Olfr189-ps1 16 59063611 to 59064093 482 - pseudogene olfactory receptor 189, pseudogene 1
Olfr190 16 59074155 to 59075078 923 - protein coding gene olfactory receptor 190
Olfr191 16 59085552 to 59086481 929 - protein coding gene olfactory receptor 191
Olfr192 16 59098066 to 59098990 924 - polymorphic pseudogene olfactory receptor 192
Olfr193 16 59109679 to 59110608 929 - protein coding gene olfactory receptor 193
Olfr194 16 59119148 to 59120068 920 - protein coding gene olfactory receptor 194
Olfr195 16 59148852 to 59149778 926 + protein coding gene olfactory receptor 195
Olfr196 16 59166647 to 59170454 3807 - protein coding gene olfactory receptor 196
Tssr141641 16 59171305 to 59171341 36 - TSS region transcription start site region 141641
Olfr197 16 59185556 to 59186481 925 - polymorphic pseudogene olfactory receptor 197
Olfr198 16 59201504 to 59203522 2018 - protein coding gene olfactory receptor 198
Olfr199 16 59215685 to 59216611 926 - protein coding gene olfactory receptor 199
Olfr200-ps1 16 59255128 to 59255664 536 - pseudogene olfactory receptor 200, pseudogene 1
Olfr201 16 59268739 to 59269665 926 - protein coding gene olfactory receptor 201
Olfr202 16 59283572 to 59284495 923 - protein coding gene olfactory receptor 202
Olfr203 16 59303155 to 59304075 920 + protein coding gene olfactory receptor 203
Olfr204 16 59314488 to 59315405 917 - protein coding gene olfactory receptor 204
Olfr205 16 59328590 to 59329507 917 - protein coding gene olfactory receptor 205
Olfr206 16 59344779 to 59345699 920 - protein coding gene olfactory receptor 206
Olfr209 16 59361224 to 59362240 1016 - protein coding gene olfactory receptor 209
Gm33611 16 59405026 to 59406161 1135 + lncRNA gene predicted gene, 33611
Gabrr3 16 59407382 to 59461739 54357 + protein coding gene gamma-aminobutyric acid (GABA) receptor, rho 3
Orai2-ps 16 59457584 to 59460790 3206 + pseudogene ORAI calcium release-activated calcium modulator 2, pseudogene
Tssr138873 16 59457605 to 59457627 22 + TSS region transcription start site region 138873
1700022E09Rik 16 59466872 to 59469238 2366 - lincRNA gene RIKEN cDNA 1700022E09 gene
Cpgi8345 16 59471644 to 59472257 613 CpG island CpG island 8345
Riox2 16 59471775 to 59492461 20686 + protein coding gene ribosomal oxygenase 2
Tssr138874 16 59471778 to 59471861 83 + TSS region transcription start site region 138874
Tssr4921 16 59471863 to 59471875 12 + TSS region transcription start site region 4921
Crybg3 16 59490775 to 59600979 110204 - protein coding gene beta-gamma crystallin domain containing 3
Tssr141642 16 59492447 to 59492449 2 - TSS region transcription start site region 141642
Tssr141643 16 59495770 to 59495780 10 - TSS region transcription start site region 141643
Tssr4922 16 59505825 to 59505827 2 + TSS region transcription start site region 4922
Tssr138875 16 59538730 to 59538731 1 + TSS region transcription start site region 138875
Tssr141644 16 59557363 to 59557371 8 - TSS region transcription start site region 141644
Tssr141645 16 59557373 to 59557380 7 - TSS region transcription start site region 141645
Tssr141646 16 59557388 to 59557398 10 - TSS region transcription start site region 141646
Tssr141647 16 59557402 to 59557441 39 - TSS region transcription start site region 141647
Tssr4923 16 59557489 to 59557504 15 + TSS region transcription start site region 4923
Tssr4924 16 59559216 to 59559222 6 + TSS region transcription start site region 4924
Tssr141648 16 59600144 to 59600148 4 - TSS region transcription start site region 141648
Cpgi8346 16 59600354 to 59601475 1121 CpG island CpG island 8346
Tssr141649 16 59600979 to 59601059 80 - TSS region transcription start site region 141649
Arl6 16 59613321 to 59639411 26090 - protein coding gene ADP-ribosylation factor-like 6
A930013N22Rik 16 59615992 to 59616902 910 unclassified gene RIKEN cDNA A930013N22 gene
Tssr141650 16 59632525 to 59632541 16 - TSS region transcription start site region 141650
Tssr141651 16 59632550 to 59632555 5 - TSS region transcription start site region 141651
Tssr141652 16 59632569 to 59632583 14 - TSS region transcription start site region 141652
Tssr138876 16 59636941 to 59636949 8 + TSS region transcription start site region 138876
4930547E14Rik 16 59636945 to 59672993 36048 + lncRNA gene RIKEN cDNA 4930547E14 gene
Cpgi8347 16 59638692 to 59639598 906 CpG island CpG island 8347
Tssr141653 16 59639124 to 59639191 67 - TSS region transcription start site region 141653
Tssr138877 16 59639193 to 59639211 18 + TSS region transcription start site region 138877
Tssr141654 16 59639382 to 59639445 63 - TSS region transcription start site region 141654
9330168O09Rik 16 59642028 to 59646309 4281 unclassified gene RIKEN cDNA 9330168O09 gene
Epha6 16 59653483 to 60605531 952048 - protein coding gene Eph receptor A6