Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 16:57601785-59034071

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113 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ipng3 16 22956502 to 57773713 34817211 QTL imprinted postnatal growth 3
Cmss1 16 57302000 to 57606864 304864 - protein coding gene cms small ribosomal subunit 1
Cpgi8338 16 57606381 to 57607271 890 CpG island CpG island 8338
Tssr141607 16 57606796 to 57606811 15 - TSS region transcription start site region 141607
Tssr141608 16 57606816 to 57606879 63 - TSS region transcription start site region 141608
Col8a1 16 57624258 to 57754737 130479 - protein coding gene collagen, type VIII, alpha 1
Tssr141609 16 57645076 to 57645080 4 - TSS region transcription start site region 141609
Cpgi8339 16 57696410 to 57696653 243 CpG island CpG island 8339
Cpgi8340 16 57754679 to 57754837 158 CpG island CpG island 8340
Tssr141610 16 57754707 to 57754724 17 - TSS region transcription start site region 141610
Gm49577 16 57761481 to 57762158 677 - pseudogene predicted gene, 49577
Gm5674 16 57768778 to 57769248 470 - pseudogene predicted gene 5674
Pcd4ts3 16 57773560 to 57773713 153 QTL p-glycoprotein positive CD4 T cell subset 3
D16Mit5 16 57773560 to 57773713 153 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 5
Gm49575 16 57811487 to 58042341 230854 + lincRNA gene predicted gene, 49575
Gm24039 16 57884008 to 57884139 131 - snoRNA gene predicted gene, 24039
Tssr4918 16 57888059 to 57888062 3 + TSS region transcription start site region 4918
Rpl7a-ps4 16 57896806 to 57897597 791 - pseudogene ribosomal protein 7A, pseudogene 4
Gm37458 16 57902933 to 57903342 409 + unclassified gene predicted gene, 37458
Gm49576 16 57993538 to 58006023 12485 - lincRNA gene predicted gene, 49576
Tssr141611 16 58082950 to 58082984 34 - TSS region transcription start site region 141611
Gm41463 16 58147018 to 58148684 1666 - lncRNA gene predicted gene, 41463
Gm49574 16 58238104 to 58249239 11135 + lincRNA gene predicted gene, 49574
Gm37825 16 58316785 to 58319071 2286 - unclassified gene predicted gene, 37825
D16Ium46 16 58398264 to 58398478 214 DNA segment DNA segment, Chr 16, Indiana University Medical 46
4930461C15Rik 16 58404878 to 58408276 3398 - lincRNA gene RIKEN cDNA 4930461C15 gene
Cpgi8341 16 58408060 to 58409364 1304 CpG island CpG island 8341
Tssr141612 16 58408318 to 58408327 9 - TSS region transcription start site region 141612
Dcbld2 16 58408443 to 58469727 61284 + protein coding gene discoidin, CUB and LCCL domain containing 2
Tssr138849 16 58408481 to 58408523 42 + TSS region transcription start site region 138849
Tssr141613 16 58415315 to 58415327 12 - TSS region transcription start site region 141613
Tssr138850 16 58415474 to 58415483 9 + TSS region transcription start site region 138850
Tssr138851 16 58415598 to 58415607 9 + TSS region transcription start site region 138851
D16Ertd88e 16 58417289 to 58417503 214 DNA segment DNA segment, Chr 16, ERATO Doi 88, expressed
Tssr138852 16 58436582 to 58436598 16 + TSS region transcription start site region 138852
Tssr138853 16 58458323 to 58458364 41 + TSS region transcription start site region 138853
Tssr138854 16 58461806 to 58461820 14 + TSS region transcription start site region 138854
Tssr138855 16 58465486 to 58465487 1 + TSS region transcription start site region 138855
Tssr138856 16 58466278 to 58466281 3 + TSS region transcription start site region 138856
St3gal6 16 58469742 to 58524253 54511 - protein coding gene ST3 beta-galactoside alpha-2,3-sialyltransferase 6
Gm33475 16 58475952 to 58483165 7213 + lncRNA gene predicted gene, 33475
Tssr141614 16 58479174 to 58479186 12 - TSS region transcription start site region 141614
Tssr138857 16 58498708 to 58498719 11 + TSS region transcription start site region 138857
Tssr141615 16 58499333 to 58499347 14 - TSS region transcription start site region 141615
Tssr141616 16 58499349 to 58499362 13 - TSS region transcription start site region 141616
Tssr141617 16 58499382 to 58499402 20 - TSS region transcription start site region 141617
Tssr141618 16 58499819 to 58499841 22 - TSS region transcription start site region 141618
Tssr4919 16 58499847 to 58499857 10 - TSS region transcription start site region 4919
Tssr4920 16 58499873 to 58499885 12 - TSS region transcription start site region 4920
Tssr141619 16 58507604 to 58507633 29 - TSS region transcription start site region 141619
Tssr141620 16 58507641 to 58507662 21 - TSS region transcription start site region 141620
Tssr141621 16 58507901 to 58507918 17 - TSS region transcription start site region 141621
Tssr141622 16 58515833 to 58515836 3 - TSS region transcription start site region 141622
Cpgi8342 16 58522703 to 58523711 1008 CpG island CpG island 8342
Tssr141623 16 58523302 to 58523342 40 - TSS region transcription start site region 141623
Tssr141624 16 58523349 to 58523361 12 - TSS region transcription start site region 141624
Tssr141625 16 58523496 to 58523502 6 - TSS region transcription start site region 141625
Tssr141626 16 58523504 to 58523520 16 - TSS region transcription start site region 141626
Tssr141627 16 58523522 to 58523538 16 - TSS region transcription start site region 141627
Tssr141628 16 58523541 to 58523592 51 - TSS region transcription start site region 141628
Tssr141629 16 58523614 to 58523624 10 - TSS region transcription start site region 141629
Tssr141630 16 58523716 to 58523730 14 - TSS region transcription start site region 141630
Tssr141631 16 58523758 to 58523810 52 - TSS region transcription start site region 141631
Tssr141632 16 58524164 to 58524179 15 - TSS region transcription start site region 141632
Tssr141633 16 58524187 to 58524198 11 - TSS region transcription start site region 141633
Tssr141634 16 58524214 to 58524227 13 - TSS region transcription start site region 141634
Tssr141635 16 58524239 to 58524249 10 - TSS region transcription start site region 141635
Gm20942 16 58555117 to 58555705 588 - pseudogene predicted gene, 20942
Tssr141636 16 58555749 to 58555752 3 - TSS region transcription start site region 141636
Gm813 16 58613686 to 58616978 3292 - protein coding gene predicted gene 813
Tssr141637 16 58616973 to 58616979 6 - TSS region transcription start site region 141637
Tssr138858 16 58622617 to 58622632 15 + TSS region transcription start site region 138858
E330017A01Rik 16 58635262 to 58638403 3141 - protein coding gene RIKEN cDNA E330017A01 gene
Tssr141638 16 58638391 to 58638410 19 - TSS region transcription start site region 141638
Gm49701 16 58651490 to 58655244 3754 - lincRNA gene predicted gene, 49701
Gm41464 16 58657478 to 58662146 4668 - lncRNA gene predicted gene, 41464
Tssr138859 16 58662094 to 58662112 18 + TSS region transcription start site region 138859
Cpgi8343 16 58669953 to 58670996 1043 CpG island CpG island 8343
Tssr138860 16 58670050 to 58670090 40 + TSS region transcription start site region 138860
Cpox 16 58670208 to 58680391 10183 + protein coding gene coproporphyrinogen oxidase
Tssr138861 16 58670235 to 58670246 11 + TSS region transcription start site region 138861
Tssr138862 16 58670262 to 58670362 100 + TSS region transcription start site region 138862
Tssr138863 16 58670367 to 58670374 7 + TSS region transcription start site region 138863
Tssr138864 16 58670506 to 58670555 49 + TSS region transcription start site region 138864
Tssr138865 16 58670741 to 58670764 23 + TSS region transcription start site region 138865
Tssr138866 16 58677785 to 58677825 40 + TSS region transcription start site region 138866
Tssr138867 16 58677833 to 58677844 11 + TSS region transcription start site region 138867
Tssr138868 16 58679702 to 58679723 21 + TSS region transcription start site region 138868
Gpr15 16 58717435 to 58718724 1289 - protein coding gene G protein-coupled receptor 15
Tssr141639 16 58718769 to 58718783 14 - TSS region transcription start site region 141639
Tssr141640 16 58718865 to 58718891 26 - TSS region transcription start site region 141640
Tssr138869 16 58726339 to 58726349 10 + TSS region transcription start site region 138869
Tssr138870 16 58726369 to 58726375 6 + TSS region transcription start site region 138870
Cpgi8344 16 58727818 to 58728640 822 CpG island CpG island 8344
Cldnd1 16 58727910 to 58734247 6337 + protein coding gene claudin domain containing 1
Tssr138871 16 58727997 to 58728059 62 + TSS region transcription start site region 138871
Tssr138872 16 58733770 to 58733788 18 + TSS region transcription start site region 138872
Gm27564 16 58749589 to 58749684 95 - miRNA gene predicted gene, 27564
Gm26019 16 58751478 to 58751596 118 - snoRNA gene predicted gene, 26019
Olfr172 16 58760152 to 58761240 1088 - protein coding gene olfactory receptor 172
D16Ium60 16 58762983 to 58763137 154 DNA segment DNA segment, Chr 16, Indiana University Medical 60
Olfr173 16 58796779 to 58797942 1163 - protein coding gene olfactory receptor 173
Olfr175-ps1 16 58823781 to 58826761 2980 - protein coding gene olfactory receptor 175, pseudogene 1
Olfr177 16 58872219 to 58874669 2450 - protein coding gene olfactory receptor 177
Olfr178 16 58889259 to 58890218 959 - protein coding gene olfactory receptor 178
Olfr180 16 58915686 to 58918486 2800 - protein coding gene olfactory receptor 180
Olfr181 16 58925557 to 58928644 3087 - protein coding gene olfactory receptor 181
Olfr182-ps1 16 58960100 to 58960883 783 - pseudogene olfactory receptor 182, pseudogene 1
Gm45071 16 58960203 to 58960773 570 + pseudogene predicted gene 45071
Olfr183 16 58995357 to 59001441 6084 + protein coding gene olfactory receptor 183
Olfr184-ps1 16 59006586 to 59007417 831 - pseudogene olfactory receptor 184, pseudogene 1
Olfr185-ps1 16 59022096 to 59022863 767 - pseudogene olfactory receptor 185, pseudogene 1
Olfr186 16 59026976 to 59027905 929 - protein coding gene olfactory receptor 186