Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 16:56892270-58252297

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112 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ipng3 16 22956502 to 57773713 34817211 QTL imprinted postnatal growth 3
Gm15839 16 56886367 to 56921506 35139 + antisense lncRNA gene predicted gene 15839
Gm15840 16 56909111 to 56910053 942 - pseudogene predicted gene 15840
Gm8932 16 56909295 to 56909926 631 + pseudogene predicted gene 8932
Lnp1 16 56914344 to 56928061 13717 - protein coding gene leukemia NUP98 fusion partner 1
Tssr141578 16 56928089 to 56928127 38 - TSS region transcription start site region 141578
Gm8938 16 56981703 to 56982837 1134 + pseudogene predicted gene 8938
Tmem45a2 16 57036967 to 57071372 34405 - protein coding gene transmembrane protein 45A2
Tssr141579 16 57071227 to 57071237 10 - TSS region transcription start site region 141579
Tssr141580 16 57071348 to 57071388 40 - TSS region transcription start site region 141580
Cpgi8332 16 57121303 to 57122408 1105 CpG island CpG island 8332
Tssr138815 16 57121455 to 57121486 31 + TSS region transcription start site region 138815
Tssr138816 16 57121682 to 57121701 19 + TSS region transcription start site region 138816
Tssr138817 16 57121705 to 57121761 56 + TSS region transcription start site region 138817
Tomm70a 16 57121714 to 57154530 32816 + protein coding gene translocase of outer mitochondrial membrane 70A
Tssr138818 16 57121766 to 57121782 16 + TSS region transcription start site region 138818
Tssr138819 16 57121791 to 57121802 11 + TSS region transcription start site region 138819
Tssr138820 16 57126497 to 57126501 4 + TSS region transcription start site region 138820
Nit2 16 57156665 to 57167332 10667 - protein coding gene nitrilase family, member 2
Tssr141581 16 57163719 to 57163726 7 - TSS region transcription start site region 141581
Tssr141582 16 57163760 to 57163772 12 - TSS region transcription start site region 141582
Tssr141583 16 57163774 to 57163800 26 - TSS region transcription start site region 141583
Cpgi8333 16 57166787 to 57167516 729 CpG island CpG island 8333
Tssr141584 16 57167307 to 57167367 60 - TSS region transcription start site region 141584
Gm16892 16 57167401 to 57174413 7012 + antisense lncRNA gene predicted gene, 16892
Tbc1d23 16 57168862 to 57231504 62642 - protein coding gene TBC1 domain family, member 23
Tssr141585 16 57175639 to 57175646 7 - TSS region transcription start site region 141585
Tssr138821 16 57175750 to 57175784 34 + TSS region transcription start site region 138821
Tssr141586 16 57189393 to 57189446 53 - TSS region transcription start site region 141586
Tssr141587 16 57191226 to 57191260 34 - TSS region transcription start site region 141587
Tssr138822 16 57191363 to 57191380 17 + TSS region transcription start site region 138822
Tssr141588 16 57196652 to 57196671 19 - TSS region transcription start site region 141588
Tssr141589 16 57198996 to 57199019 23 - TSS region transcription start site region 141589
Tssr141590 16 57199030 to 57199059 29 - TSS region transcription start site region 141590
Tssr141591 16 57199087 to 57199097 10 - TSS region transcription start site region 141591
Tssr141592 16 57211156 to 57211167 11 - TSS region transcription start site region 141592
Cpgi8334 16 57231103 to 57231768 665 CpG island CpG island 8334
Tssr141593 16 57231350 to 57231359 9 - TSS region transcription start site region 141593
Tssr141594 16 57231364 to 57231405 41 - TSS region transcription start site region 141594
Tssr141595 16 57231434 to 57231509 75 - TSS region transcription start site region 141595
Tssr138823 16 57239697 to 57239702 5 + TSS region transcription start site region 138823
Gm49581 16 57265362 to 57265805 443 - pseudogene predicted gene, 49581
Tssr141596 16 57265482 to 57265491 9 - TSS region transcription start site region 141596
Tssr141597 16 57265501 to 57265513 12 - TSS region transcription start site region 141597
Tssr141598 16 57265522 to 57265542 20 - TSS region transcription start site region 141598
Tmem30c 16 57266139 to 57292865 26726 - protein coding gene transmembrane protein 30C
Cpgi8335 16 57280451 to 57280744 293 CpG island CpG island 8335
Gm26800 16 57280890 to 57281496 606 + antisense lncRNA gene predicted gene, 26800
Tssr141599 16 57292845 to 57292867 22 - TSS region transcription start site region 141599
Cmss1 16 57302000 to 57606864 304864 - protein coding gene cms small ribosomal subunit 1
Tssr138824 16 57331950 to 57331960 10 + TSS region transcription start site region 138824
4921517D16Rik 16 57331951 to 57335432 3481 + antisense lncRNA gene RIKEN cDNA 4921517D16 gene
Gm49579 16 57338310 to 57340403 2093 + antisense lncRNA gene predicted gene, 49579
Tssr141600 16 57350548 to 57350578 30 - TSS region transcription start site region 141600
Tssr138825 16 57352771 to 57352782 11 + TSS region transcription start site region 138825
Tssr138826 16 57352813 to 57352825 12 + TSS region transcription start site region 138826
Tssr138827 16 57352982 to 57353002 20 + TSS region transcription start site region 138827
Tssr138828 16 57353006 to 57353035 29 + TSS region transcription start site region 138828
Tssr138829 16 57353102 to 57353117 15 + TSS region transcription start site region 138829
Tssr141601 16 57353132 to 57353163 31 - TSS region transcription start site region 141601
Tssr141602 16 57353180 to 57353197 17 - TSS region transcription start site region 141602
Tssr138830 16 57353238 to 57353255 17 + TSS region transcription start site region 138830
Tssr138831 16 57353271 to 57353284 13 + TSS region transcription start site region 138831
Filip1l 16 57353277 to 57572804 219527 + protein coding gene filamin A interacting protein 1-like
Tssr138832 16 57353296 to 57353308 12 + TSS region transcription start site region 138832
Tssr141603 16 57391453 to 57391492 39 - TSS region transcription start site region 141603
Tssr138833 16 57391474 to 57391509 35 + TSS region transcription start site region 138833
Cpgi8336 16 57391484 to 57391731 247 CpG island CpG island 8336
Tssr141604 16 57391527 to 57391557 30 - TSS region transcription start site region 141604
Tssr141605 16 57391669 to 57391683 14 - TSS region transcription start site region 141605
Tssr4917 16 57397712 to 57397739 27 + TSS region transcription start site region 4917
Tssr141606 16 57421054 to 57421059 5 - TSS region transcription start site region 141606
Gm20956 16 57425402 to 57425951 549 - pseudogene predicted gene, 20956
Tssr138834 16 57443391 to 57443395 4 + TSS region transcription start site region 138834
Tssr138835 16 57449138 to 57449141 3 + TSS region transcription start site region 138835
D16Mit64 16 57459493 to 57459712 219 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 64
Tssr138836 16 57471335 to 57471348 13 + TSS region transcription start site region 138836
Tssr138837 16 57498171 to 57498175 4 + TSS region transcription start site region 138837
Cpgi8337 16 57548964 to 57549555 591 CpG island CpG island 8337
Tssr138838 16 57549205 to 57549217 12 + TSS region transcription start site region 138838
Tssr138839 16 57549232 to 57549264 32 + TSS region transcription start site region 138839
Gm45967 16 57561428 to 57599987 38559 - lncRNA gene predicted gene, 45967
Tssr138840 16 57569702 to 57569724 22 + TSS region transcription start site region 138840
Tssr138841 16 57569765 to 57569779 14 + TSS region transcription start site region 138841
Tssr138842 16 57569852 to 57569866 14 + TSS region transcription start site region 138842
Tssr138843 16 57570670 to 57570691 21 + TSS region transcription start site region 138843
Tssr138844 16 57572051 to 57572076 25 + TSS region transcription start site region 138844
Tssr138845 16 57572166 to 57572179 13 + TSS region transcription start site region 138845
Tssr138846 16 57572270 to 57572297 27 + TSS region transcription start site region 138846
Tssr138847 16 57572304 to 57572332 28 + TSS region transcription start site region 138847
Tssr138848 16 57572333 to 57572349 16 + TSS region transcription start site region 138848
Cpgi8338 16 57606381 to 57607271 890 CpG island CpG island 8338
Tssr141607 16 57606796 to 57606811 15 - TSS region transcription start site region 141607
Tssr141608 16 57606816 to 57606879 63 - TSS region transcription start site region 141608
Col8a1 16 57624258 to 57754737 130479 - protein coding gene collagen, type VIII, alpha 1
Tssr141609 16 57645076 to 57645080 4 - TSS region transcription start site region 141609
Cpgi8339 16 57696410 to 57696653 243 CpG island CpG island 8339
Cpgi8340 16 57754679 to 57754837 158 CpG island CpG island 8340
Tssr141610 16 57754707 to 57754724 17 - TSS region transcription start site region 141610
Gm49577 16 57761481 to 57762158 677 - pseudogene predicted gene, 49577
Gm5674 16 57768778 to 57769248 470 - pseudogene predicted gene 5674
D16Mit5 16 57773560 to 57773713 153 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 5
Pcd4ts3 16 57773560 to 57773713 153 QTL p-glycoprotein positive CD4 T cell subset 3
Gm49575 16 57811487 to 58042341 230854 + lincRNA gene predicted gene, 49575
Gm24039 16 57884008 to 57884139 131 - snoRNA gene predicted gene, 24039
Tssr4918 16 57888059 to 57888062 3 + TSS region transcription start site region 4918
Rpl7a-ps4 16 57896806 to 57897597 791 - pseudogene ribosomal protein 7A, pseudogene 4
Gm37458 16 57902933 to 57903342 409 + unclassified gene predicted gene, 37458
Gm49576 16 57993538 to 58006023 12485 - lincRNA gene predicted gene, 49576
Tssr141611 16 58082950 to 58082984 34 - TSS region transcription start site region 141611
Gm41463 16 58147018 to 58148684 1666 - lncRNA gene predicted gene, 41463
Gm49574 16 58238104 to 58249239 11135 + lincRNA gene predicted gene, 49574