Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 16:56891766-57351782

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53 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm15839 16 56886367 to 56921506 35139 + antisense lncRNA gene predicted gene 15839
Gm15840 16 56909111 to 56910053 942 - pseudogene predicted gene 15840
Gm8932 16 56909295 to 56909926 631 + pseudogene predicted gene 8932
Lnp1 16 56914344 to 56928061 13717 - protein coding gene leukemia NUP98 fusion partner 1
Tssr141578 16 56928089 to 56928127 38 - TSS region transcription start site region 141578
Gm8938 16 56981703 to 56982837 1134 + pseudogene predicted gene 8938
Tmem45a2 16 57036967 to 57071372 34405 - protein coding gene transmembrane protein 45A2
Tssr141579 16 57071227 to 57071237 10 - TSS region transcription start site region 141579
Tssr141580 16 57071348 to 57071388 40 - TSS region transcription start site region 141580
Cpgi8332 16 57121303 to 57122408 1105 CpG island CpG island 8332
Tssr138815 16 57121455 to 57121486 31 + TSS region transcription start site region 138815
Tssr138816 16 57121682 to 57121701 19 + TSS region transcription start site region 138816
Tssr138817 16 57121705 to 57121761 56 + TSS region transcription start site region 138817
Tomm70a 16 57121714 to 57154530 32816 + protein coding gene translocase of outer mitochondrial membrane 70A
Tssr138818 16 57121766 to 57121782 16 + TSS region transcription start site region 138818
Tssr138819 16 57121791 to 57121802 11 + TSS region transcription start site region 138819
Tssr138820 16 57126497 to 57126501 4 + TSS region transcription start site region 138820
Nit2 16 57156665 to 57167332 10667 - protein coding gene nitrilase family, member 2
Tssr141581 16 57163719 to 57163726 7 - TSS region transcription start site region 141581
Tssr141582 16 57163760 to 57163772 12 - TSS region transcription start site region 141582
Tssr141583 16 57163774 to 57163800 26 - TSS region transcription start site region 141583
Cpgi8333 16 57166787 to 57167516 729 CpG island CpG island 8333
Tssr141584 16 57167307 to 57167367 60 - TSS region transcription start site region 141584
Gm16892 16 57167401 to 57174413 7012 + antisense lncRNA gene predicted gene, 16892
Tbc1d23 16 57168862 to 57231504 62642 - protein coding gene TBC1 domain family, member 23
Tssr141585 16 57175639 to 57175646 7 - TSS region transcription start site region 141585
Tssr138821 16 57175750 to 57175784 34 + TSS region transcription start site region 138821
Tssr141586 16 57189393 to 57189446 53 - TSS region transcription start site region 141586
Tssr141587 16 57191226 to 57191260 34 - TSS region transcription start site region 141587
Tssr138822 16 57191363 to 57191380 17 + TSS region transcription start site region 138822
Tssr141588 16 57196652 to 57196671 19 - TSS region transcription start site region 141588
Tssr141589 16 57198996 to 57199019 23 - TSS region transcription start site region 141589
Tssr141590 16 57199030 to 57199059 29 - TSS region transcription start site region 141590
Tssr141591 16 57199087 to 57199097 10 - TSS region transcription start site region 141591
Tssr141592 16 57211156 to 57211167 11 - TSS region transcription start site region 141592
Cpgi8334 16 57231103 to 57231768 665 CpG island CpG island 8334
Tssr141593 16 57231350 to 57231359 9 - TSS region transcription start site region 141593
Tssr141594 16 57231364 to 57231405 41 - TSS region transcription start site region 141594
Tssr141595 16 57231434 to 57231509 75 - TSS region transcription start site region 141595
Tssr138823 16 57239697 to 57239702 5 + TSS region transcription start site region 138823
Gm49581 16 57265362 to 57265805 443 - pseudogene predicted gene, 49581
Tssr141596 16 57265482 to 57265491 9 - TSS region transcription start site region 141596
Tssr141597 16 57265501 to 57265513 12 - TSS region transcription start site region 141597
Tssr141598 16 57265522 to 57265542 20 - TSS region transcription start site region 141598
Tmem30c 16 57266139 to 57292865 26726 - protein coding gene transmembrane protein 30C
Cpgi8335 16 57280451 to 57280744 293 CpG island CpG island 8335
Gm26800 16 57280890 to 57281496 606 + antisense lncRNA gene predicted gene, 26800
Tssr141599 16 57292845 to 57292867 22 - TSS region transcription start site region 141599
Cmss1 16 57302000 to 57606864 304864 - protein coding gene cms small ribosomal subunit 1
Tssr138824 16 57331950 to 57331960 10 + TSS region transcription start site region 138824
4921517D16Rik 16 57331951 to 57335432 3481 + antisense lncRNA gene RIKEN cDNA 4921517D16 gene
Gm49579 16 57338310 to 57340403 2093 + antisense lncRNA gene predicted gene, 49579
Tssr141600 16 57350548 to 57350578 30 - TSS region transcription start site region 141600