Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 16:56831434-57631509

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112 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tmem45a 16 56805161 to 56886166 81005 - protein coding gene transmembrane protein 45a
Tssr141563 16 56831760 to 56831771 11 - TSS region transcription start site region 141563
Tssr141564 16 56831772 to 56831790 18 - TSS region transcription start site region 141564
Tssr141565 16 56831809 to 56831819 10 - TSS region transcription start site region 141565
Tssr141566 16 56831830 to 56831835 5 - TSS region transcription start site region 141566
Tssr141567 16 56831838 to 56831861 23 - TSS region transcription start site region 141567
Tssr141568 16 56831866 to 56831875 9 - TSS region transcription start site region 141568
Tssr141569 16 56831878 to 56831891 13 - TSS region transcription start site region 141569
Tssr4916 16 56839529 to 56839543 14 - TSS region transcription start site region 4916
Tssr141570 16 56839547 to 56839558 11 - TSS region transcription start site region 141570
Tssr141571 16 56867661 to 56867670 9 - TSS region transcription start site region 141571
Tssr141572 16 56885923 to 56885932 9 - TSS region transcription start site region 141572
Tssr141573 16 56885955 to 56885968 13 - TSS region transcription start site region 141573
Tssr141574 16 56885978 to 56885989 11 - TSS region transcription start site region 141574
Tssr141575 16 56886016 to 56886026 10 - TSS region transcription start site region 141575
Tssr141576 16 56886093 to 56886125 32 - TSS region transcription start site region 141576
Tssr141577 16 56886131 to 56886176 45 - TSS region transcription start site region 141577
Cpgi8331 16 56886176 to 56886401 225 CpG island CpG island 8331
Gm15839 16 56886367 to 56921506 35139 + antisense lncRNA gene predicted gene 15839
Gm15840 16 56909111 to 56910053 942 - pseudogene predicted gene 15840
Gm8932 16 56909295 to 56909926 631 + pseudogene predicted gene 8932
Lnp1 16 56914344 to 56928061 13717 - protein coding gene leukemia NUP98 fusion partner 1
Tssr141578 16 56928089 to 56928127 38 - TSS region transcription start site region 141578
Gm8938 16 56981703 to 56982837 1134 + pseudogene predicted gene 8938
Tmem45a2 16 57036967 to 57071372 34405 - protein coding gene transmembrane protein 45A2
Tssr141579 16 57071227 to 57071237 10 - TSS region transcription start site region 141579
Tssr141580 16 57071348 to 57071388 40 - TSS region transcription start site region 141580
Cpgi8332 16 57121303 to 57122408 1105 CpG island CpG island 8332
Tssr138815 16 57121455 to 57121486 31 + TSS region transcription start site region 138815
Tssr138816 16 57121682 to 57121701 19 + TSS region transcription start site region 138816
Tssr138817 16 57121705 to 57121761 56 + TSS region transcription start site region 138817
Tomm70a 16 57121714 to 57154530 32816 + protein coding gene translocase of outer mitochondrial membrane 70A
Tssr138818 16 57121766 to 57121782 16 + TSS region transcription start site region 138818
Tssr138819 16 57121791 to 57121802 11 + TSS region transcription start site region 138819
Tssr138820 16 57126497 to 57126501 4 + TSS region transcription start site region 138820
Nit2 16 57156665 to 57167332 10667 - protein coding gene nitrilase family, member 2
Tssr141581 16 57163719 to 57163726 7 - TSS region transcription start site region 141581
Tssr141582 16 57163760 to 57163772 12 - TSS region transcription start site region 141582
Tssr141583 16 57163774 to 57163800 26 - TSS region transcription start site region 141583
Cpgi8333 16 57166787 to 57167516 729 CpG island CpG island 8333
Tssr141584 16 57167307 to 57167367 60 - TSS region transcription start site region 141584
Gm16892 16 57167401 to 57174413 7012 + antisense lncRNA gene predicted gene, 16892
Tbc1d23 16 57168862 to 57231504 62642 - protein coding gene TBC1 domain family, member 23
Tssr141585 16 57175639 to 57175646 7 - TSS region transcription start site region 141585
Tssr138821 16 57175750 to 57175784 34 + TSS region transcription start site region 138821
Tssr141586 16 57189393 to 57189446 53 - TSS region transcription start site region 141586
Tssr141587 16 57191226 to 57191260 34 - TSS region transcription start site region 141587
Tssr138822 16 57191363 to 57191380 17 + TSS region transcription start site region 138822
Tssr141588 16 57196652 to 57196671 19 - TSS region transcription start site region 141588
Tssr141589 16 57198996 to 57199019 23 - TSS region transcription start site region 141589
Tssr141590 16 57199030 to 57199059 29 - TSS region transcription start site region 141590
Tssr141591 16 57199087 to 57199097 10 - TSS region transcription start site region 141591
Tssr141592 16 57211156 to 57211167 11 - TSS region transcription start site region 141592
Cpgi8334 16 57231103 to 57231768 665 CpG island CpG island 8334
Tssr141593 16 57231350 to 57231359 9 - TSS region transcription start site region 141593
Tssr141594 16 57231364 to 57231405 41 - TSS region transcription start site region 141594
Tssr141595 16 57231434 to 57231509 75 - TSS region transcription start site region 141595
Tssr138823 16 57239697 to 57239702 5 + TSS region transcription start site region 138823
Gm49581 16 57265362 to 57265805 443 - pseudogene predicted gene, 49581
Tssr141596 16 57265482 to 57265491 9 - TSS region transcription start site region 141596
Tssr141597 16 57265501 to 57265513 12 - TSS region transcription start site region 141597
Tssr141598 16 57265522 to 57265542 20 - TSS region transcription start site region 141598
Tmem30c 16 57266139 to 57292865 26726 - protein coding gene transmembrane protein 30C
Cpgi8335 16 57280451 to 57280744 293 CpG island CpG island 8335
Gm26800 16 57280890 to 57281496 606 + antisense lncRNA gene predicted gene, 26800
Tssr141599 16 57292845 to 57292867 22 - TSS region transcription start site region 141599
Cmss1 16 57302000 to 57606864 304864 - protein coding gene cms small ribosomal subunit 1
Tssr138824 16 57331950 to 57331960 10 + TSS region transcription start site region 138824
4921517D16Rik 16 57331951 to 57335432 3481 + antisense lncRNA gene RIKEN cDNA 4921517D16 gene
Gm49579 16 57338310 to 57340403 2093 + antisense lncRNA gene predicted gene, 49579
Tssr141600 16 57350548 to 57350578 30 - TSS region transcription start site region 141600
Tssr138825 16 57352771 to 57352782 11 + TSS region transcription start site region 138825
Tssr138826 16 57352813 to 57352825 12 + TSS region transcription start site region 138826
Tssr138827 16 57352982 to 57353002 20 + TSS region transcription start site region 138827
Tssr138828 16 57353006 to 57353035 29 + TSS region transcription start site region 138828
Tssr138829 16 57353102 to 57353117 15 + TSS region transcription start site region 138829
Tssr141601 16 57353132 to 57353163 31 - TSS region transcription start site region 141601
Tssr141602 16 57353180 to 57353197 17 - TSS region transcription start site region 141602
Tssr138830 16 57353238 to 57353255 17 + TSS region transcription start site region 138830
Tssr138831 16 57353271 to 57353284 13 + TSS region transcription start site region 138831
Filip1l 16 57353277 to 57572804 219527 + protein coding gene filamin A interacting protein 1-like
Tssr138832 16 57353296 to 57353308 12 + TSS region transcription start site region 138832
Tssr141603 16 57391453 to 57391492 39 - TSS region transcription start site region 141603
Tssr138833 16 57391474 to 57391509 35 + TSS region transcription start site region 138833
Cpgi8336 16 57391484 to 57391731 247 CpG island CpG island 8336
Tssr141604 16 57391527 to 57391557 30 - TSS region transcription start site region 141604
Tssr141605 16 57391669 to 57391683 14 - TSS region transcription start site region 141605
Tssr4917 16 57397712 to 57397739 27 + TSS region transcription start site region 4917
Tssr141606 16 57421054 to 57421059 5 - TSS region transcription start site region 141606
Gm20956 16 57425402 to 57425951 549 - pseudogene predicted gene, 20956
Tssr138834 16 57443391 to 57443395 4 + TSS region transcription start site region 138834
Tssr138835 16 57449138 to 57449141 3 + TSS region transcription start site region 138835
D16Mit64 16 57459493 to 57459712 219 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 64
Tssr138836 16 57471335 to 57471348 13 + TSS region transcription start site region 138836
Tssr138837 16 57498171 to 57498175 4 + TSS region transcription start site region 138837
Cpgi8337 16 57548964 to 57549555 591 CpG island CpG island 8337
Tssr138838 16 57549205 to 57549217 12 + TSS region transcription start site region 138838
Tssr138839 16 57549232 to 57549264 32 + TSS region transcription start site region 138839
Gm45967 16 57561428 to 57599987 38559 - lncRNA gene predicted gene, 45967
Tssr138840 16 57569702 to 57569724 22 + TSS region transcription start site region 138840
Tssr138841 16 57569765 to 57569779 14 + TSS region transcription start site region 138841
Tssr138842 16 57569852 to 57569866 14 + TSS region transcription start site region 138842
Tssr138843 16 57570670 to 57570691 21 + TSS region transcription start site region 138843
Tssr138844 16 57572051 to 57572076 25 + TSS region transcription start site region 138844
Tssr138845 16 57572166 to 57572179 13 + TSS region transcription start site region 138845
Tssr138846 16 57572270 to 57572297 27 + TSS region transcription start site region 138846
Tssr138847 16 57572304 to 57572332 28 + TSS region transcription start site region 138847
Tssr138848 16 57572333 to 57572349 16 + TSS region transcription start site region 138848
Cpgi8338 16 57606381 to 57607271 890 CpG island CpG island 8338
Tssr141607 16 57606796 to 57606811 15 - TSS region transcription start site region 141607
Tssr141608 16 57606816 to 57606879 63 - TSS region transcription start site region 141608
Col8a1 16 57624258 to 57754737 130479 - protein coding gene collagen, type VIII, alpha 1