Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 16:55977878-57190135

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97 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm28037 16 55966343 to 55980721 14378 + unclassified non-coding RNA gene predicted gene, 28037
Zbtb11 16 55973883 to 56008913 35030 + protein coding gene zinc finger and BTB domain containing 11
Tssr141548 16 55994970 to 55994984 14 - TSS region transcription start site region 141548
Pcnp 16 56015507 to 56030175 14668 - protein coding gene PEST proteolytic signal containing nuclear protein
Tssr141549 16 56017041 to 56017050 9 - TSS region transcription start site region 141549
Tssr141550 16 56021260 to 56021264 4 - TSS region transcription start site region 141550
Cpgi8326 16 56028961 to 56030156 1195 CpG island CpG island 8326
Tssr141551 16 56029666 to 56029720 54 - TSS region transcription start site region 141551
Trmt10c 16 56033720 to 56037774 4054 - protein coding gene tRNA methyltransferase 10C, mitochondrial RNase P subunit
Gm22422 16 56035753 to 56035887 134 - snoRNA gene predicted gene, 22422
Cpgi8327 16 56037380 to 56038158 778 CpG island CpG island 8327
Tssr141552 16 56037728 to 56037810 82 - TSS region transcription start site region 141552
Senp7 16 56057530 to 56190031 132501 + protein coding gene SUMO1/sentrin specific peptidase 7
Cpgi8328 16 56064101 to 56064782 681 CpG island CpG island 8328
Gm41462 16 56067819 to 56069664 1845 - lncRNA gene predicted gene, 41462
Gm24047 16 56070563 to 56070666 103 + miRNA gene predicted gene, 24047
Cpgi8329 16 56075393 to 56076149 756 CpG island CpG island 8329
Tssr138804 16 56075399 to 56075492 93 + TSS region transcription start site region 138804
Tssr138805 16 56075508 to 56075518 10 + TSS region transcription start site region 138805
Gm18723 16 56095713 to 56096555 842 - pseudogene predicted gene, 18723
C330019O22Rik 16 56115268 to 56116254 986 unclassified gene RIKEN cDNA C330019O22 gene
Tssr141553 16 56116250 to 56116265 15 - TSS region transcription start site region 141553
Tssr138806 16 56127372 to 56127395 23 + TSS region transcription start site region 138806
Tssr138807 16 56127403 to 56127439 36 + TSS region transcription start site region 138807
Gm49682 16 56149166 to 56149562 396 - pseudogene predicted gene, 49682
Tssr138808 16 56193604 to 56193614 10 + TSS region transcription start site region 138808
Tssr138809 16 56204284 to 56204289 5 + TSS region transcription start site region 138809
Impg2 16 56204313 to 56273756 69443 + protein coding gene interphotoreceptor matrix proteoglycan 2
Tssr138810 16 56204325 to 56204338 13 + TSS region transcription start site region 138810
Tssr138811 16 56282152 to 56282161 9 + TSS region transcription start site region 138811
D16Mit171 16 56294865 to 56294987 122 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 171
D16Mit171.1 16 56294976 to 56295105 129 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 171.1
Gm21050 16 56335586 to 56337378 1792 - pseudogene predicted gene, 21050
Tssr138812 16 56477821 to 56477835 14 + TSS region transcription start site region 138812
Tssr138813 16 56477838 to 56477860 22 + TSS region transcription start site region 138813
Tssr138814 16 56477867 to 56477891 24 + TSS region transcription start site region 138814
Abi3bp 16 56477878 to 56690135 212257 + protein coding gene ABI gene family, member 3 (NESH) binding protein
D16Ium65 16 56559583 to 56559819 236 DNA segment DNA segment, Chr 16, Indiana University Medical 65
Tfg 16 56690332 to 56717450 27118 - protein coding gene Trk-fused gene
Tssr141554 16 56690999 to 56691012 13 - TSS region transcription start site region 141554
Tssr141555 16 56712825 to 56712838 13 - TSS region transcription start site region 141555
Cpgi8330 16 56716723 to 56717865 1142 CpG island CpG island 8330
Tssr141556 16 56717227 to 56717285 58 - TSS region transcription start site region 141556
Tssr141557 16 56717286 to 56717412 126 - TSS region transcription start site region 141557
Tssr141558 16 56717446 to 56717457 11 - TSS region transcription start site region 141558
Tssr141559 16 56717528 to 56717539 11 - TSS region transcription start site region 141559
Tssr141560 16 56717541 to 56717576 35 - TSS region transcription start site region 141560
Tssr141561 16 56721261 to 56721272 11 - TSS region transcription start site region 141561
Adgrg7 16 56724609 to 56795855 71246 - protein coding gene adhesion G protein-coupled receptor G7
Gm15693 16 56758265 to 56758901 636 + pseudogene predicted gene 15693
Tssr141562 16 56795823 to 56795899 76 - TSS region transcription start site region 141562
Tmem45a 16 56805161 to 56886166 81005 - protein coding gene transmembrane protein 45a
Tssr141563 16 56831760 to 56831771 11 - TSS region transcription start site region 141563
Tssr141564 16 56831772 to 56831790 18 - TSS region transcription start site region 141564
Tssr141565 16 56831809 to 56831819 10 - TSS region transcription start site region 141565
Tssr141566 16 56831830 to 56831835 5 - TSS region transcription start site region 141566
Tssr141567 16 56831838 to 56831861 23 - TSS region transcription start site region 141567
Tssr141568 16 56831866 to 56831875 9 - TSS region transcription start site region 141568
Tssr141569 16 56831878 to 56831891 13 - TSS region transcription start site region 141569
Tssr4916 16 56839529 to 56839543 14 - TSS region transcription start site region 4916
Tssr141570 16 56839547 to 56839558 11 - TSS region transcription start site region 141570
Tssr141571 16 56867661 to 56867670 9 - TSS region transcription start site region 141571
Tssr141572 16 56885923 to 56885932 9 - TSS region transcription start site region 141572
Tssr141573 16 56885955 to 56885968 13 - TSS region transcription start site region 141573
Tssr141574 16 56885978 to 56885989 11 - TSS region transcription start site region 141574
Tssr141575 16 56886016 to 56886026 10 - TSS region transcription start site region 141575
Tssr141576 16 56886093 to 56886125 32 - TSS region transcription start site region 141576
Tssr141577 16 56886131 to 56886176 45 - TSS region transcription start site region 141577
Cpgi8331 16 56886176 to 56886401 225 CpG island CpG island 8331
Gm15839 16 56886367 to 56921506 35139 + antisense lncRNA gene predicted gene 15839
Gm15840 16 56909111 to 56910053 942 - pseudogene predicted gene 15840
Gm8932 16 56909295 to 56909926 631 + pseudogene predicted gene 8932
Lnp1 16 56914344 to 56928061 13717 - protein coding gene leukemia NUP98 fusion partner 1
Tssr141578 16 56928089 to 56928127 38 - TSS region transcription start site region 141578
Gm8938 16 56981703 to 56982837 1134 + pseudogene predicted gene 8938
Tmem45a2 16 57036967 to 57071372 34405 - protein coding gene transmembrane protein 45A2
Tssr141579 16 57071227 to 57071237 10 - TSS region transcription start site region 141579
Tssr141580 16 57071348 to 57071388 40 - TSS region transcription start site region 141580
Cpgi8332 16 57121303 to 57122408 1105 CpG island CpG island 8332
Tssr138815 16 57121455 to 57121486 31 + TSS region transcription start site region 138815
Tssr138816 16 57121682 to 57121701 19 + TSS region transcription start site region 138816
Tssr138817 16 57121705 to 57121761 56 + TSS region transcription start site region 138817
Tomm70a 16 57121714 to 57154530 32816 + protein coding gene translocase of outer mitochondrial membrane 70A
Tssr138818 16 57121766 to 57121782 16 + TSS region transcription start site region 138818
Tssr138819 16 57121791 to 57121802 11 + TSS region transcription start site region 138819
Tssr138820 16 57126497 to 57126501 4 + TSS region transcription start site region 138820
Nit2 16 57156665 to 57167332 10667 - protein coding gene nitrilase family, member 2
Tssr141581 16 57163719 to 57163726 7 - TSS region transcription start site region 141581
Tssr141582 16 57163760 to 57163772 12 - TSS region transcription start site region 141582
Tssr141583 16 57163774 to 57163800 26 - TSS region transcription start site region 141583
Cpgi8333 16 57166787 to 57167516 729 CpG island CpG island 8333
Tssr141584 16 57167307 to 57167367 60 - TSS region transcription start site region 141584
Gm16892 16 57167401 to 57174413 7012 + antisense lncRNA gene predicted gene, 16892
Tbc1d23 16 57168862 to 57231504 62642 - protein coding gene TBC1 domain family, member 23
Tssr141585 16 57175639 to 57175646 7 - TSS region transcription start site region 141585
Tssr138821 16 57175750 to 57175784 34 + TSS region transcription start site region 138821
Tssr141586 16 57189393 to 57189446 53 - TSS region transcription start site region 141586