Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 16:55865399-56285492

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66 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Nxpe3 16 55839953 to 55895285 55332 - protein coding gene neurexophilin and PC-esterase domain family, member 3
Tssr141536 16 55865566 to 55865570 4 - TSS region transcription start site region 141536
Gm19041 16 55870304 to 55870824 520 + pseudogene predicted gene, 19041
Gm17809 16 55883072 to 55884491 1419 - pseudogene predicted gene, 17809
Cpgi8321 16 55894699 to 55895744 1045 CpG island CpG island 8321
Tssr141537 16 55895184 to 55895214 30 - TSS region transcription start site region 141537
Tssr141538 16 55895324 to 55895338 14 - TSS region transcription start site region 141538
Tssr141539 16 55895355 to 55895410 55 - TSS region transcription start site region 141539
Cep97 16 55899888 to 55934848 34960 - protein coding gene centrosomal protein 97
Cpgi8322 16 55905275 to 55905842 567 CpG island CpG island 8322
Tssr141540 16 55916843 to 55916851 8 - TSS region transcription start site region 141540
Tssr141541 16 55923863 to 55923881 18 - TSS region transcription start site region 141541
Tssr141542 16 55923986 to 55923992 6 - TSS region transcription start site region 141542
Cpgi8323 16 55933835 to 55934919 1084 CpG island CpG island 8323
Tssr141543 16 55934808 to 55934840 32 - TSS region transcription start site region 141543
Tssr141544 16 55934845 to 55934868 23 - TSS region transcription start site region 141544
Gm8900 16 55940339 to 55940711 372 - pseudogene predicted gene 8900
Tssr141545 16 55940732 to 55940735 3 - TSS region transcription start site region 141545
Tssr138793 16 55949196 to 55949225 29 + TSS region transcription start site region 138793
Gm6958 16 55961315 to 55965068 3753 + protein coding gene predicted gene 6958
Rpl24 16 55966275 to 55971435 5160 + protein coding gene ribosomal protein L24
Tssr138794 16 55966294 to 55966334 40 + TSS region transcription start site region 138794
Tssr138795 16 55966338 to 55966371 33 + TSS region transcription start site region 138795
Gm28037 16 55966343 to 55980721 14378 + unclassified non-coding RNA gene predicted gene, 28037
Cpgi8324 16 55966351 to 55966918 567 CpG island CpG island 8324
Tssr138796 16 55966379 to 55966404 25 + TSS region transcription start site region 138796
Tssr138797 16 55966412 to 55966430 18 + TSS region transcription start site region 138797
Tssr138798 16 55967129 to 55967143 14 + TSS region transcription start site region 138798
Zbtb11os1 16 55973268 to 55974617 1349 - antisense lncRNA gene zinc finger and BTB domain containing 11, opposite strand 1
Cpgi8325 16 55973391 to 55974830 1439 CpG island CpG island 8325
Tssr138799 16 55973786 to 55973800 14 + TSS region transcription start site region 138799
Tssr138800 16 55973811 to 55973830 19 + TSS region transcription start site region 138800
Tssr138801 16 55973837 to 55973864 27 + TSS region transcription start site region 138801
Tssr138802 16 55973881 to 55973892 11 + TSS region transcription start site region 138802
Zbtb11 16 55973883 to 56008913 35030 + protein coding gene zinc finger and BTB domain containing 11
Tssr141546 16 55974513 to 55974525 12 - TSS region transcription start site region 141546
Tssr141547 16 55974541 to 55974607 66 - TSS region transcription start site region 141547
Tssr138803 16 55975172 to 55975207 35 + TSS region transcription start site region 138803
Tssr141548 16 55994970 to 55994984 14 - TSS region transcription start site region 141548
Pcnp 16 56015507 to 56030175 14668 - protein coding gene PEST proteolytic signal containing nuclear protein
Tssr141549 16 56017041 to 56017050 9 - TSS region transcription start site region 141549
Tssr141550 16 56021260 to 56021264 4 - TSS region transcription start site region 141550
Cpgi8326 16 56028961 to 56030156 1195 CpG island CpG island 8326
Tssr141551 16 56029666 to 56029720 54 - TSS region transcription start site region 141551
Trmt10c 16 56033720 to 56037774 4054 - protein coding gene tRNA methyltransferase 10C, mitochondrial RNase P subunit
Gm22422 16 56035753 to 56035887 134 - snoRNA gene predicted gene, 22422
Cpgi8327 16 56037380 to 56038158 778 CpG island CpG island 8327
Tssr141552 16 56037728 to 56037810 82 - TSS region transcription start site region 141552
Senp7 16 56057530 to 56190031 132501 + protein coding gene SUMO1/sentrin specific peptidase 7
Cpgi8328 16 56064101 to 56064782 681 CpG island CpG island 8328
Gm41462 16 56067819 to 56069664 1845 - lncRNA gene predicted gene, 41462
Gm24047 16 56070563 to 56070666 103 + miRNA gene predicted gene, 24047
Cpgi8329 16 56075393 to 56076149 756 CpG island CpG island 8329
Tssr138804 16 56075399 to 56075492 93 + TSS region transcription start site region 138804
Tssr138805 16 56075508 to 56075518 10 + TSS region transcription start site region 138805
Gm18723 16 56095713 to 56096555 842 - pseudogene predicted gene, 18723
C330019O22Rik 16 56115268 to 56116254 986 unclassified gene RIKEN cDNA C330019O22 gene
Tssr141553 16 56116250 to 56116265 15 - TSS region transcription start site region 141553
Tssr138806 16 56127372 to 56127395 23 + TSS region transcription start site region 138806
Tssr138807 16 56127403 to 56127439 36 + TSS region transcription start site region 138807
Gm49682 16 56149166 to 56149562 396 - pseudogene predicted gene, 49682
Tssr138808 16 56193604 to 56193614 10 + TSS region transcription start site region 138808
Tssr138809 16 56204284 to 56204289 5 + TSS region transcription start site region 138809
Impg2 16 56204313 to 56273756 69443 + protein coding gene interphotoreceptor matrix proteoglycan 2
Tssr138810 16 56204325 to 56204338 13 + TSS region transcription start site region 138810
Tssr138811 16 56282152 to 56282161 9 + TSS region transcription start site region 138811