Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 16:55854313-56623756

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74 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Nxpe3 16 55839953 to 55895285 55332 - protein coding gene neurexophilin and PC-esterase domain family, member 3
Tssr141536 16 55865566 to 55865570 4 - TSS region transcription start site region 141536
Gm19041 16 55870304 to 55870824 520 + pseudogene predicted gene, 19041
Gm17809 16 55883072 to 55884491 1419 - pseudogene predicted gene, 17809
Cpgi8321 16 55894699 to 55895744 1045 CpG island CpG island 8321
Tssr141537 16 55895184 to 55895214 30 - TSS region transcription start site region 141537
Tssr141538 16 55895324 to 55895338 14 - TSS region transcription start site region 141538
Tssr141539 16 55895355 to 55895410 55 - TSS region transcription start site region 141539
Cep97 16 55899888 to 55934848 34960 - protein coding gene centrosomal protein 97
Cpgi8322 16 55905275 to 55905842 567 CpG island CpG island 8322
Tssr141540 16 55916843 to 55916851 8 - TSS region transcription start site region 141540
Tssr141541 16 55923863 to 55923881 18 - TSS region transcription start site region 141541
Tssr141542 16 55923986 to 55923992 6 - TSS region transcription start site region 141542
Cpgi8323 16 55933835 to 55934919 1084 CpG island CpG island 8323
Tssr141543 16 55934808 to 55934840 32 - TSS region transcription start site region 141543
Tssr141544 16 55934845 to 55934868 23 - TSS region transcription start site region 141544
Gm8900 16 55940339 to 55940711 372 - pseudogene predicted gene 8900
Tssr141545 16 55940732 to 55940735 3 - TSS region transcription start site region 141545
Tssr138793 16 55949196 to 55949225 29 + TSS region transcription start site region 138793
Gm6958 16 55961315 to 55965068 3753 + protein coding gene predicted gene 6958
Rpl24 16 55966275 to 55971435 5160 + protein coding gene ribosomal protein L24
Tssr138794 16 55966294 to 55966334 40 + TSS region transcription start site region 138794
Tssr138795 16 55966338 to 55966371 33 + TSS region transcription start site region 138795
Gm28037 16 55966343 to 55980721 14378 + unclassified non-coding RNA gene predicted gene, 28037
Cpgi8324 16 55966351 to 55966918 567 CpG island CpG island 8324
Tssr138796 16 55966379 to 55966404 25 + TSS region transcription start site region 138796
Tssr138797 16 55966412 to 55966430 18 + TSS region transcription start site region 138797
Tssr138798 16 55967129 to 55967143 14 + TSS region transcription start site region 138798
Zbtb11os1 16 55973268 to 55974617 1349 - antisense lncRNA gene zinc finger and BTB domain containing 11, opposite strand 1
Cpgi8325 16 55973391 to 55974830 1439 CpG island CpG island 8325
Tssr138799 16 55973786 to 55973800 14 + TSS region transcription start site region 138799
Tssr138800 16 55973811 to 55973830 19 + TSS region transcription start site region 138800
Tssr138801 16 55973837 to 55973864 27 + TSS region transcription start site region 138801
Tssr138802 16 55973881 to 55973892 11 + TSS region transcription start site region 138802
Zbtb11 16 55973883 to 56008913 35030 + protein coding gene zinc finger and BTB domain containing 11
Tssr141546 16 55974513 to 55974525 12 - TSS region transcription start site region 141546
Tssr141547 16 55974541 to 55974607 66 - TSS region transcription start site region 141547
Tssr138803 16 55975172 to 55975207 35 + TSS region transcription start site region 138803
Tssr141548 16 55994970 to 55994984 14 - TSS region transcription start site region 141548
Pcnp 16 56015507 to 56030175 14668 - protein coding gene PEST proteolytic signal containing nuclear protein
Tssr141549 16 56017041 to 56017050 9 - TSS region transcription start site region 141549
Tssr141550 16 56021260 to 56021264 4 - TSS region transcription start site region 141550
Cpgi8326 16 56028961 to 56030156 1195 CpG island CpG island 8326
Tssr141551 16 56029666 to 56029720 54 - TSS region transcription start site region 141551
Trmt10c 16 56033720 to 56037774 4054 - protein coding gene tRNA methyltransferase 10C, mitochondrial RNase P subunit
Gm22422 16 56035753 to 56035887 134 - snoRNA gene predicted gene, 22422
Cpgi8327 16 56037380 to 56038158 778 CpG island CpG island 8327
Tssr141552 16 56037728 to 56037810 82 - TSS region transcription start site region 141552
Senp7 16 56057530 to 56190031 132501 + protein coding gene SUMO1/sentrin specific peptidase 7
Cpgi8328 16 56064101 to 56064782 681 CpG island CpG island 8328
Gm41462 16 56067819 to 56069664 1845 - lncRNA gene predicted gene, 41462
Gm24047 16 56070563 to 56070666 103 + miRNA gene predicted gene, 24047
Cpgi8329 16 56075393 to 56076149 756 CpG island CpG island 8329
Tssr138804 16 56075399 to 56075492 93 + TSS region transcription start site region 138804
Tssr138805 16 56075508 to 56075518 10 + TSS region transcription start site region 138805
Gm18723 16 56095713 to 56096555 842 - pseudogene predicted gene, 18723
C330019O22Rik 16 56115268 to 56116254 986 unclassified gene RIKEN cDNA C330019O22 gene
Tssr141553 16 56116250 to 56116265 15 - TSS region transcription start site region 141553
Tssr138806 16 56127372 to 56127395 23 + TSS region transcription start site region 138806
Tssr138807 16 56127403 to 56127439 36 + TSS region transcription start site region 138807
Gm49682 16 56149166 to 56149562 396 - pseudogene predicted gene, 49682
Tssr138808 16 56193604 to 56193614 10 + TSS region transcription start site region 138808
Tssr138809 16 56204284 to 56204289 5 + TSS region transcription start site region 138809
Impg2 16 56204313 to 56273756 69443 + protein coding gene interphotoreceptor matrix proteoglycan 2
Tssr138810 16 56204325 to 56204338 13 + TSS region transcription start site region 138810
Tssr138811 16 56282152 to 56282161 9 + TSS region transcription start site region 138811
D16Mit171 16 56294865 to 56294987 122 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 171
D16Mit171.1 16 56294976 to 56295105 129 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 171.1
Gm21050 16 56335586 to 56337378 1792 - pseudogene predicted gene, 21050
Tssr138812 16 56477821 to 56477835 14 + TSS region transcription start site region 138812
Tssr138813 16 56477838 to 56477860 22 + TSS region transcription start site region 138813
Tssr138814 16 56477867 to 56477891 24 + TSS region transcription start site region 138814
Abi3bp 16 56477878 to 56690135 212257 + protein coding gene ABI gene family, member 3 (NESH) binding protein
D16Ium65 16 56559583 to 56559819 236 DNA segment DNA segment, Chr 16, Indiana University Medical 65