Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 16:55479287-56219491

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117 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm45968 16 55420838 to 55582490 161652 - lncRNA gene predicted gene, 45968
Mir5118 16 55494731 to 55494797 66 + miRNA gene microRNA 5118
Tssr141502 16 55522302 to 55522311 9 - TSS region transcription start site region 141502
Tssr141503 16 55523668 to 55523679 11 - TSS region transcription start site region 141503
Tssr141504 16 55523680 to 55523701 21 - TSS region transcription start site region 141504
Tssr141505 16 55523731 to 55523746 15 - TSS region transcription start site region 141505
Tssr141506 16 55523781 to 55523784 3 - TSS region transcription start site region 141506
Tssr138787 16 55526261 to 55526266 5 + TSS region transcription start site region 138787
D16Mit127 16 55533975 to 55534078 103 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 127
Tssr4915 16 55551216 to 55551219 3 + TSS region transcription start site region 4915
Gm23003 16 55594782 to 55594888 106 - snRNA gene predicted gene, 23003
D16Mit184 16 55603180 to 55603377 197 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 184
Gm19771 16 55739918 to 55740152 234 + pseudogene predicted gene, 19771
Gm26369 16 55779045 to 55779144 99 - snRNA gene predicted gene, 26369
Tssr141507 16 55787943 to 55787964 21 - TSS region transcription start site region 141507
Tssr141508 16 55798937 to 55798973 36 - TSS region transcription start site region 141508
Nfkbiz 16 55811377 to 55838641 27264 - protein coding gene nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta
Tssr141509 16 55811942 to 55811958 16 - TSS region transcription start site region 141509
Tssr141510 16 55812235 to 55812248 13 - TSS region transcription start site region 141510
Tssr141511 16 55816526 to 55816540 14 - TSS region transcription start site region 141511
Tssr138788 16 55816773 to 55816793 20 + TSS region transcription start site region 138788
Tssr138789 16 55818093 to 55818128 35 + TSS region transcription start site region 138789
Tssr138790 16 55818139 to 55818190 51 + TSS region transcription start site region 138790
Tssr141512 16 55818299 to 55818337 38 - TSS region transcription start site region 141512
Tssr141513 16 55818454 to 55818475 21 - TSS region transcription start site region 141513
Tssr141514 16 55818513 to 55818537 24 - TSS region transcription start site region 141514
Tssr138791 16 55818554 to 55818558 4 + TSS region transcription start site region 138791
Tssr141515 16 55818958 to 55818960 2 - TSS region transcription start site region 141515
Tssr141516 16 55819559 to 55819570 11 - TSS region transcription start site region 141516
Tssr141517 16 55819623 to 55819637 14 - TSS region transcription start site region 141517
Tssr138792 16 55820385 to 55820414 29 + TSS region transcription start site region 138792
Cpgi8318 16 55821494 to 55822660 1166 CpG island CpG island 8318
Tssr141518 16 55821929 to 55821947 18 - TSS region transcription start site region 141518
Tssr141519 16 55822036 to 55822092 56 - TSS region transcription start site region 141519
Tssr141520 16 55822128 to 55822145 17 - TSS region transcription start site region 141520
Tssr141521 16 55822525 to 55822556 31 - TSS region transcription start site region 141521
Tssr141522 16 55828453 to 55828460 7 - TSS region transcription start site region 141522
Tssr141523 16 55831136 to 55831166 30 - TSS region transcription start site region 141523
Tssr141524 16 55831224 to 55831244 20 - TSS region transcription start site region 141524
Tssr141525 16 55831263 to 55831287 24 - TSS region transcription start site region 141525
Tssr141526 16 55831289 to 55831294 5 - TSS region transcription start site region 141526
Tssr141527 16 55831320 to 55831331 11 - TSS region transcription start site region 141527
Tssr141528 16 55831485 to 55831497 12 - TSS region transcription start site region 141528
Tssr141529 16 55838591 to 55838600 9 - TSS region transcription start site region 141529
Cpgi8319 16 55838612 to 55838983 371 CpG island CpG island 8319
Tssr141530 16 55838630 to 55838641 11 - TSS region transcription start site region 141530
Tssr141531 16 55838644 to 55838661 17 - TSS region transcription start site region 141531
Tssr141532 16 55838666 to 55838675 9 - TSS region transcription start site region 141532
Tssr141533 16 55838780 to 55838789 9 - TSS region transcription start site region 141533
Tssr141534 16 55838827 to 55838853 26 - TSS region transcription start site region 141534
Nxpe3 16 55839953 to 55895285 55332 - protein coding gene neurexophilin and PC-esterase domain family, member 3
Tssr141535 16 55847806 to 55847817 11 - TSS region transcription start site region 141535
Cpgi8320 16 55849287 to 55849491 204 CpG island CpG island 8320
Tssr141536 16 55865566 to 55865570 4 - TSS region transcription start site region 141536
Gm19041 16 55870304 to 55870824 520 + pseudogene predicted gene, 19041
Gm17809 16 55883072 to 55884491 1419 - pseudogene predicted gene, 17809
Cpgi8321 16 55894699 to 55895744 1045 CpG island CpG island 8321
Tssr141537 16 55895184 to 55895214 30 - TSS region transcription start site region 141537
Tssr141538 16 55895324 to 55895338 14 - TSS region transcription start site region 141538
Tssr141539 16 55895355 to 55895410 55 - TSS region transcription start site region 141539
Cep97 16 55899888 to 55934848 34960 - protein coding gene centrosomal protein 97
Cpgi8322 16 55905275 to 55905842 567 CpG island CpG island 8322
Tssr141540 16 55916843 to 55916851 8 - TSS region transcription start site region 141540
Tssr141541 16 55923863 to 55923881 18 - TSS region transcription start site region 141541
Tssr141542 16 55923986 to 55923992 6 - TSS region transcription start site region 141542
Cpgi8323 16 55933835 to 55934919 1084 CpG island CpG island 8323
Tssr141543 16 55934808 to 55934840 32 - TSS region transcription start site region 141543
Tssr141544 16 55934845 to 55934868 23 - TSS region transcription start site region 141544
Gm8900 16 55940339 to 55940711 372 - pseudogene predicted gene 8900
Tssr141545 16 55940732 to 55940735 3 - TSS region transcription start site region 141545
Tssr138793 16 55949196 to 55949225 29 + TSS region transcription start site region 138793
Gm6958 16 55961315 to 55965068 3753 + protein coding gene predicted gene 6958
Rpl24 16 55966275 to 55971435 5160 + protein coding gene ribosomal protein L24
Tssr138794 16 55966294 to 55966334 40 + TSS region transcription start site region 138794
Tssr138795 16 55966338 to 55966371 33 + TSS region transcription start site region 138795
Gm28037 16 55966343 to 55980721 14378 + unclassified non-coding RNA gene predicted gene, 28037
Cpgi8324 16 55966351 to 55966918 567 CpG island CpG island 8324
Tssr138796 16 55966379 to 55966404 25 + TSS region transcription start site region 138796
Tssr138797 16 55966412 to 55966430 18 + TSS region transcription start site region 138797
Tssr138798 16 55967129 to 55967143 14 + TSS region transcription start site region 138798
Zbtb11os1 16 55973268 to 55974617 1349 - antisense lncRNA gene zinc finger and BTB domain containing 11, opposite strand 1
Cpgi8325 16 55973391 to 55974830 1439 CpG island CpG island 8325
Tssr138799 16 55973786 to 55973800 14 + TSS region transcription start site region 138799
Tssr138800 16 55973811 to 55973830 19 + TSS region transcription start site region 138800
Tssr138801 16 55973837 to 55973864 27 + TSS region transcription start site region 138801
Tssr138802 16 55973881 to 55973892 11 + TSS region transcription start site region 138802
Zbtb11 16 55973883 to 56008913 35030 + protein coding gene zinc finger and BTB domain containing 11
Tssr141546 16 55974513 to 55974525 12 - TSS region transcription start site region 141546
Tssr141547 16 55974541 to 55974607 66 - TSS region transcription start site region 141547
Tssr138803 16 55975172 to 55975207 35 + TSS region transcription start site region 138803
Tssr141548 16 55994970 to 55994984 14 - TSS region transcription start site region 141548
Pcnp 16 56015507 to 56030175 14668 - protein coding gene PEST proteolytic signal containing nuclear protein
Tssr141549 16 56017041 to 56017050 9 - TSS region transcription start site region 141549
Tssr141550 16 56021260 to 56021264 4 - TSS region transcription start site region 141550
Cpgi8326 16 56028961 to 56030156 1195 CpG island CpG island 8326
Tssr141551 16 56029666 to 56029720 54 - TSS region transcription start site region 141551
Trmt10c 16 56033720 to 56037774 4054 - protein coding gene tRNA methyltransferase 10C, mitochondrial RNase P subunit
Gm22422 16 56035753 to 56035887 134 - snoRNA gene predicted gene, 22422
Cpgi8327 16 56037380 to 56038158 778 CpG island CpG island 8327
Tssr141552 16 56037728 to 56037810 82 - TSS region transcription start site region 141552
Senp7 16 56057530 to 56190031 132501 + protein coding gene SUMO1/sentrin specific peptidase 7
Cpgi8328 16 56064101 to 56064782 681 CpG island CpG island 8328
Gm41462 16 56067819 to 56069664 1845 - lncRNA gene predicted gene, 41462
Gm24047 16 56070563 to 56070666 103 + miRNA gene predicted gene, 24047
Cpgi8329 16 56075393 to 56076149 756 CpG island CpG island 8329
Tssr138804 16 56075399 to 56075492 93 + TSS region transcription start site region 138804
Tssr138805 16 56075508 to 56075518 10 + TSS region transcription start site region 138805
Gm18723 16 56095713 to 56096555 842 - pseudogene predicted gene, 18723
C330019O22Rik 16 56115268 to 56116254 986 unclassified gene RIKEN cDNA C330019O22 gene
Tssr141553 16 56116250 to 56116265 15 - TSS region transcription start site region 141553
Tssr138806 16 56127372 to 56127395 23 + TSS region transcription start site region 138806
Tssr138807 16 56127403 to 56127439 36 + TSS region transcription start site region 138807
Gm49682 16 56149166 to 56149562 396 - pseudogene predicted gene, 49682
Tssr138808 16 56193604 to 56193614 10 + TSS region transcription start site region 138808
Tssr138809 16 56204284 to 56204289 5 + TSS region transcription start site region 138809
Impg2 16 56204313 to 56273756 69443 + protein coding gene interphotoreceptor matrix proteoglycan 2
Tssr138810 16 56204325 to 56204338 13 + TSS region transcription start site region 138810