Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 16:52243428-57013552

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305 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Alcam 16 52248996 to 52453064 204068 - protein coding gene activated leukocyte cell adhesion molecule
Tssr141400 16 52249565 to 52249578 13 - TSS region transcription start site region 141400
Tssr141401 16 52249700 to 52249756 56 - TSS region transcription start site region 141401
Tssr141402 16 52249874 to 52249890 16 - TSS region transcription start site region 141402
Tssr141403 16 52250135 to 52250152 17 - TSS region transcription start site region 141403
Tssr141404 16 52250350 to 52250376 26 - TSS region transcription start site region 141404
Tssr141405 16 52258465 to 52258471 6 - TSS region transcription start site region 141405
Tssr141406 16 52268411 to 52268460 49 - TSS region transcription start site region 141406
Tssr141407 16 52270710 to 52270724 14 - TSS region transcription start site region 141407
Tssr141408 16 52270764 to 52270778 14 - TSS region transcription start site region 141408
D330040H18Rik 16 52271223 to 52273032 1809 unclassified gene RIKEN cDNA D330040H18 gene
Tssr141409 16 52271266 to 52271280 14 - TSS region transcription start site region 141409
Tssr141410 16 52271330 to 52271363 33 - TSS region transcription start site region 141410
Tssr141411 16 52271487 to 52271507 20 - TSS region transcription start site region 141411
Tssr141412 16 52271518 to 52271530 12 - TSS region transcription start site region 141412
Tssr141413 16 52271759 to 52271770 11 - TSS region transcription start site region 141413
Tssr141414 16 52272053 to 52272081 28 - TSS region transcription start site region 141414
Tssr141415 16 52272191 to 52272210 19 - TSS region transcription start site region 141415
Tssr141416 16 52273437 to 52273451 14 - TSS region transcription start site region 141416
Tssr141417 16 52273959 to 52273977 18 - TSS region transcription start site region 141417
Tssr141418 16 52274168 to 52274176 8 - TSS region transcription start site region 141418
Tssr141419 16 52278340 to 52278342 2 - TSS region transcription start site region 141419
Tssr141420 16 52287683 to 52287705 22 - TSS region transcription start site region 141420
Tssr141421 16 52298761 to 52298772 11 - TSS region transcription start site region 141421
Tssr141422 16 52301358 to 52301384 26 - TSS region transcription start site region 141422
Tssr141423 16 52301406 to 52301420 14 - TSS region transcription start site region 141423
Tssr141424 16 52301755 to 52301767 12 - TSS region transcription start site region 141424
Tssr141425 16 52304106 to 52304125 19 - TSS region transcription start site region 141425
Gm32597 16 52330962 to 52337822 6860 + lncRNA gene predicted gene, 32597
Tssr141426 16 52332447 to 52332463 16 - TSS region transcription start site region 141426
Tssr141427 16 52333152 to 52333159 7 - TSS region transcription start site region 141427
Tssr141428 16 52338507 to 52338542 35 - TSS region transcription start site region 141428
Tssr141429 16 52343793 to 52343820 27 - TSS region transcription start site region 141429
Tssr141430 16 52346737 to 52346760 23 - TSS region transcription start site region 141430
Tssr141431 16 52346929 to 52346944 15 - TSS region transcription start site region 141431
Tssr141432 16 52354272 to 52354287 15 - TSS region transcription start site region 141432
Tssr141433 16 52355886 to 52355925 39 - TSS region transcription start site region 141433
Tssr141434 16 52356070 to 52356114 44 - TSS region transcription start site region 141434
Tssr141435 16 52356137 to 52356186 49 - TSS region transcription start site region 141435
Gm41461 16 52358212 to 52365015 6803 - lncRNA gene predicted gene, 41461
Tssr141436 16 52361886 to 52361888 2 - TSS region transcription start site region 141436
Tssr141437 16 52366446 to 52366455 9 - TSS region transcription start site region 141437
Tssr141438 16 52366874 to 52366881 7 - TSS region transcription start site region 141438
Tssr141439 16 52372697 to 52372702 5 - TSS region transcription start site region 141439
Tssr141440 16 52376427 to 52376438 11 - TSS region transcription start site region 141440
Tssr141441 16 52386804 to 52386815 11 - TSS region transcription start site region 141441
Tssr141442 16 52388856 to 52388867 11 - TSS region transcription start site region 141442
Tssr141443 16 52389471 to 52389491 20 - TSS region transcription start site region 141443
Tssr141444 16 52390388 to 52390408 20 - TSS region transcription start site region 141444
Tssr141445 16 52394784 to 52394824 40 - TSS region transcription start site region 141445
Tssr141446 16 52396274 to 52396295 21 - TSS region transcription start site region 141446
Tssr141447 16 52400393 to 52400406 13 - TSS region transcription start site region 141447
Tssr141448 16 52400464 to 52400475 11 - TSS region transcription start site region 141448
Tssr141449 16 52400532 to 52400570 38 - TSS region transcription start site region 141449
Tssr141450 16 52400590 to 52400613 23 - TSS region transcription start site region 141450
Tssr141451 16 52400633 to 52400650 17 - TSS region transcription start site region 141451
Tssr141452 16 52402489 to 52402492 3 - TSS region transcription start site region 141452
Tssr141453 16 52403302 to 52403318 16 - TSS region transcription start site region 141453
Tssr141454 16 52404435 to 52404438 3 - TSS region transcription start site region 141454
Tssr141455 16 52406724 to 52406736 12 - TSS region transcription start site region 141455
Tssr141456 16 52407596 to 52407609 13 - TSS region transcription start site region 141456
Tssr141457 16 52407623 to 52407669 46 - TSS region transcription start site region 141457
Tssr141458 16 52407677 to 52407698 21 - TSS region transcription start site region 141458
Tssr141459 16 52407700 to 52407711 11 - TSS region transcription start site region 141459
Tssr141460 16 52407734 to 52407754 20 - TSS region transcription start site region 141460
Tssr141461 16 52407758 to 52407769 11 - TSS region transcription start site region 141461
Tssr141462 16 52407812 to 52407820 8 - TSS region transcription start site region 141462
Tssr141463 16 52411572 to 52411583 11 - TSS region transcription start site region 141463
Tssr141464 16 52411678 to 52411690 12 - TSS region transcription start site region 141464
Tssr141465 16 52411716 to 52411754 38 - TSS region transcription start site region 141465
Tssr141466 16 52411760 to 52411778 18 - TSS region transcription start site region 141466
Tssr138780 16 52413923 to 52413933 10 + TSS region transcription start site region 138780
6720473M08Rik 16 52414282 to 52422210 7928 unclassified gene RIKEN cDNA 6720473M08 gene
Tssr141467 16 52417623 to 52417638 15 - TSS region transcription start site region 141467
Tssr141468 16 52418439 to 52418478 39 - TSS region transcription start site region 141468
Tssr141469 16 52419910 to 52419919 9 - TSS region transcription start site region 141469
Tssr141470 16 52419951 to 52419963 12 - TSS region transcription start site region 141470
Tssr141471 16 52419997 to 52420015 18 - TSS region transcription start site region 141471
Tssr141472 16 52420019 to 52420030 11 - TSS region transcription start site region 141472
Tssr141473 16 52420046 to 52420072 26 - TSS region transcription start site region 141473
Tssr141474 16 52420124 to 52420135 11 - TSS region transcription start site region 141474
Tssr141475 16 52420260 to 52420275 15 - TSS region transcription start site region 141475
Tssr141476 16 52424351 to 52424392 41 - TSS region transcription start site region 141476
Tssr141477 16 52424436 to 52424454 18 - TSS region transcription start site region 141477
Tssr141478 16 52424577 to 52424581 4 - TSS region transcription start site region 141478
Tssr141479 16 52424704 to 52424720 16 - TSS region transcription start site region 141479
Tssr141480 16 52424917 to 52424940 23 - TSS region transcription start site region 141480
Tssr138781 16 52426162 to 52426180 18 + TSS region transcription start site region 138781
Tssr141481 16 52427002 to 52427009 7 - TSS region transcription start site region 141481
Tssr141482 16 52427518 to 52427538 20 - TSS region transcription start site region 141482
Tssr141483 16 52427802 to 52427841 39 - TSS region transcription start site region 141483
Tssr141484 16 52429489 to 52429498 9 - TSS region transcription start site region 141484
Tssr141485 16 52434495 to 52434507 12 - TSS region transcription start site region 141485
Tssr141486 16 52436269 to 52436285 16 - TSS region transcription start site region 141486
Tssr141487 16 52436497 to 52436515 18 - TSS region transcription start site region 141487
Tssr141488 16 52438329 to 52438330 1 - TSS region transcription start site region 141488
Tssr141489 16 52442291 to 52442299 8 - TSS region transcription start site region 141489
Tssr141490 16 52442364 to 52442375 11 - TSS region transcription start site region 141490
Cpgi8316 16 52450414 to 52450726 312 CpG island CpG island 8316
Tssr141491 16 52451875 to 52451887 12 - TSS region transcription start site region 141491
Cpgi8317 16 52452246 to 52453669 1423 CpG island CpG island 8317
Tssr141492 16 52452613 to 52452677 64 - TSS region transcription start site region 141492
Tssr141493 16 52452958 to 52452983 25 - TSS region transcription start site region 141493
Tssr141494 16 52452989 to 52453013 24 - TSS region transcription start site region 141494
Tssr141495 16 52453017 to 52453028 11 - TSS region transcription start site region 141495
Tssr141496 16 52453161 to 52453188 27 - TSS region transcription start site region 141496
Tssr138782 16 52453338 to 52453415 77 + TSS region transcription start site region 138782
Tssr141497 16 52468527 to 52468557 30 - TSS region transcription start site region 141497
Tssr4910 16 52468560 to 52468565 5 - TSS region transcription start site region 4910
Tssr138783 16 52468679 to 52468688 9 + TSS region transcription start site region 138783
Tssr141498 16 52468757 to 52468774 17 - TSS region transcription start site region 141498
Gm49634 16 52581172 to 52581408 236 - pseudogene predicted gene, 49634
Tssr138784 16 52746469 to 52746473 4 + TSS region transcription start site region 138784
4930404A05Rik 16 52799508 to 52815744 16236 - lincRNA gene RIKEN cDNA 4930404A05 gene
Tssr141499 16 52815758 to 52815767 9 - TSS region transcription start site region 141499
4930405D01Rik 16 52828813 to 52953947 125134 + lincRNA gene RIKEN cDNA 4930405D01 gene
Tssr138785 16 52829129 to 52829138 9 + TSS region transcription start site region 138785
Gm25723 16 52946804 to 52946929 125 - snoRNA gene predicted gene, 25723
Tssr141500 16 53246522 to 53246548 26 - TSS region transcription start site region 141500
Gm22459 16 53404086 to 53404193 107 - snoRNA gene predicted gene, 22459
Gm49637 16 53479282 to 53479684 402 - pseudogene predicted gene, 49637
Tssr138786 16 53576459 to 53576466 7 + TSS region transcription start site region 138786
Gm49638 16 53619529 to 53620067 538 - pseudogene predicted gene, 49638
Gm25041 16 53885370 to 53885434 64 + miRNA gene predicted gene, 25041
D16Mit30 16 53962550 to 53962701 151 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 30
Gm5487 16 53983928 to 53986084 2156 + pseudogene predicted gene 5487
Tssr4911 16 54166296 to 54166298 2 - TSS region transcription start site region 4911
Gm49639 16 54350124 to 54350328 204 - pseudogene predicted gene, 49639
Gm25853 16 54354462 to 54354593 131 + snoRNA gene predicted gene, 25853
Gm46541 16 54582791 to 54583197 406 - pseudogene predicted gene, 46541
Gm23180 16 54628428 to 54628552 124 + snoRNA gene predicted gene, 23180
D16Mit46 16 54685934 to 54686174 240 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 46
Gm8881 16 54826498 to 54827894 1396 - pseudogene predicted gene 8881
D16Mit199 16 54915710 to 54915817 107 DNA segment DNA Segment, Chr 16, Massachusetts Institute of Technology 199
Gm22977 16 54972431 to 54972537 106 + snRNA gene predicted gene, 22977
Gm5769 16 55074405 to 55074986 581 + pseudogene predicted gene 5769
Zpld1 16 55225175 to 55297986 72811 - protein coding gene zona pellucida like domain containing 1
D16Mit221 16 55231923 to 55232039 116 DNA segment DNA Segment, Chr 16, Massachusetts Institute of Technology 221
Tssr4912 16 55262155 to 55262159 4 + TSS region transcription start site region 4912
Tssr4913 16 55282923 to 55282958 35 - TSS region transcription start site region 4913
Tssr4914 16 55283235 to 55283240 5 - TSS region transcription start site region 4914
Tssr141501 16 55283281 to 55283287 6 - TSS region transcription start site region 141501
Gm45968 16 55420838 to 55582490 161652 - lncRNA gene predicted gene, 45968
Mir5118 16 55494731 to 55494797 66 + miRNA gene microRNA 5118
Tssr141502 16 55522302 to 55522311 9 - TSS region transcription start site region 141502
Tssr141503 16 55523668 to 55523679 11 - TSS region transcription start site region 141503
Tssr141504 16 55523680 to 55523701 21 - TSS region transcription start site region 141504
Tssr141505 16 55523731 to 55523746 15 - TSS region transcription start site region 141505
Tssr141506 16 55523781 to 55523784 3 - TSS region transcription start site region 141506
Tssr138787 16 55526261 to 55526266 5 + TSS region transcription start site region 138787
D16Mit127 16 55533975 to 55534078 103 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 127
Tssr4915 16 55551216 to 55551219 3 + TSS region transcription start site region 4915
Gm23003 16 55594782 to 55594888 106 - snRNA gene predicted gene, 23003
D16Mit184 16 55603180 to 55603377 197 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 184
Gm19771 16 55739918 to 55740152 234 + pseudogene predicted gene, 19771
Gm26369 16 55779045 to 55779144 99 - snRNA gene predicted gene, 26369
Tssr141507 16 55787943 to 55787964 21 - TSS region transcription start site region 141507
Tssr141508 16 55798937 to 55798973 36 - TSS region transcription start site region 141508
Nfkbiz 16 55811377 to 55838641 27264 - protein coding gene nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta
Tssr141509 16 55811942 to 55811958 16 - TSS region transcription start site region 141509
Tssr141510 16 55812235 to 55812248 13 - TSS region transcription start site region 141510
Tssr141511 16 55816526 to 55816540 14 - TSS region transcription start site region 141511
Tssr138788 16 55816773 to 55816793 20 + TSS region transcription start site region 138788
Tssr138789 16 55818093 to 55818128 35 + TSS region transcription start site region 138789
Tssr138790 16 55818139 to 55818190 51 + TSS region transcription start site region 138790
Tssr141512 16 55818299 to 55818337 38 - TSS region transcription start site region 141512
Tssr141513 16 55818454 to 55818475 21 - TSS region transcription start site region 141513
Tssr141514 16 55818513 to 55818537 24 - TSS region transcription start site region 141514
Tssr138791 16 55818554 to 55818558 4 + TSS region transcription start site region 138791
Tssr141515 16 55818958 to 55818960 2 - TSS region transcription start site region 141515
Tssr141516 16 55819559 to 55819570 11 - TSS region transcription start site region 141516
Tssr141517 16 55819623 to 55819637 14 - TSS region transcription start site region 141517
Tssr138792 16 55820385 to 55820414 29 + TSS region transcription start site region 138792
Cpgi8318 16 55821494 to 55822660 1166 CpG island CpG island 8318
Tssr141518 16 55821929 to 55821947 18 - TSS region transcription start site region 141518
Tssr141519 16 55822036 to 55822092 56 - TSS region transcription start site region 141519
Tssr141520 16 55822128 to 55822145 17 - TSS region transcription start site region 141520
Tssr141521 16 55822525 to 55822556 31 - TSS region transcription start site region 141521
Tssr141522 16 55828453 to 55828460 7 - TSS region transcription start site region 141522
Tssr141523 16 55831136 to 55831166 30 - TSS region transcription start site region 141523
Tssr141524 16 55831224 to 55831244 20 - TSS region transcription start site region 141524
Tssr141525 16 55831263 to 55831287 24 - TSS region transcription start site region 141525
Tssr141526 16 55831289 to 55831294 5 - TSS region transcription start site region 141526
Tssr141527 16 55831320 to 55831331 11 - TSS region transcription start site region 141527
Tssr141528 16 55831485 to 55831497 12 - TSS region transcription start site region 141528
Tssr141529 16 55838591 to 55838600 9 - TSS region transcription start site region 141529
Cpgi8319 16 55838612 to 55838983 371 CpG island CpG island 8319
Tssr141530 16 55838630 to 55838641 11 - TSS region transcription start site region 141530
Tssr141531 16 55838644 to 55838661 17 - TSS region transcription start site region 141531
Tssr141532 16 55838666 to 55838675 9 - TSS region transcription start site region 141532
Tssr141533 16 55838780 to 55838789 9 - TSS region transcription start site region 141533
Tssr141534 16 55838827 to 55838853 26 - TSS region transcription start site region 141534
Nxpe3 16 55839953 to 55895285 55332 - protein coding gene neurexophilin and PC-esterase domain family, member 3
Tssr141535 16 55847806 to 55847817 11 - TSS region transcription start site region 141535
Cpgi8320 16 55849287 to 55849491 204 CpG island CpG island 8320
Tssr141536 16 55865566 to 55865570 4 - TSS region transcription start site region 141536
Gm19041 16 55870304 to 55870824 520 + pseudogene predicted gene, 19041
Gm17809 16 55883072 to 55884491 1419 - pseudogene predicted gene, 17809
Cpgi8321 16 55894699 to 55895744 1045 CpG island CpG island 8321
Tssr141537 16 55895184 to 55895214 30 - TSS region transcription start site region 141537