Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 16:5116388-5746417

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57 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ppl 16 5086291 to 5132421 46130 - protein coding gene periplakin
Cpgi7928 16 5131622 to 5133098 1476 CpG island CpG island 7928
Tssr139834 16 5132458 to 5132483 25 - TSS region transcription start site region 139834
Tssr139835 16 5132488 to 5132513 25 - TSS region transcription start site region 139835
Tssr136904 16 5146941 to 5146959 18 + TSS region transcription start site region 136904
Tssr136905 16 5146960 to 5146981 21 + TSS region transcription start site region 136905
Tssr136906 16 5146985 to 5146996 11 + TSS region transcription start site region 136906
Sec14l5 16 5147109 to 5187271 40162 + protein coding gene SEC14-like lipid binding 5
D16Mit207 16 5193429 to 5193564 135 DNA segment DNA Segment, Chr 16, Massachusetts Institute of Technology-207
Nagpa 16 5195289 to 5204012 8723 - protein coding gene N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase
Tssr139836 16 5195597 to 5195622 25 - TSS region transcription start site region 139836
Tssr139837 16 5195935 to 5195949 14 - TSS region transcription start site region 139837
Tssr139838 16 5196491 to 5196493 2 - TSS region transcription start site region 139838
Cpgi7929 16 5203068 to 5204100 1032 CpG island CpG island 7929
Tssr139839 16 5203947 to 5203964 17 - TSS region transcription start site region 139839
Tssr139840 16 5203981 to 5204017 36 - TSS region transcription start site region 139840
AU021092 16 5211823 to 5222299 10476 - protein coding gene expressed sequence AU021092
Mir6364 16 5215789 to 5215874 85 - miRNA gene microRNA 6364
Tssr139841 16 5222257 to 5222299 42 - TSS region transcription start site region 139841
Gm23689 16 5223364 to 5223473 109 + miRNA gene predicted gene, 23689
Tssr139842 16 5227825 to 5227830 5 - TSS region transcription start site region 139842
Gm26095 16 5227920 to 5228029 109 + miRNA gene predicted gene, 26095
Cpgi7930 16 5233504 to 5234151 647 CpG island CpG island 7930
Tssr136907 16 5233615 to 5233653 38 + TSS region transcription start site region 136907
Alg1 16 5233621 to 5244909 11288 + protein coding gene asparagine-linked glycosylation 1 (beta-1,4-mannosyltransferase)
Eef2kmt 16 5244155 to 5255956 11801 - protein coding gene eukaryotic elongation factor 2 lysine methyltransferase
Gm15983 16 5254786 to 5289621 34835 + antisense lncRNA gene predicted gene 15983
Cpgi7931 16 5255411 to 5256591 1180 CpG island CpG island 7931
Tssr139843 16 5255923 to 5255965 42 - TSS region transcription start site region 139843
Tssr4782 16 5305323 to 5305327 4 + TSS region transcription start site region 4782
Cpgi7932 16 5306728 to 5307307 579 CpG island CpG island 7932
Gm41414 16 5306801 to 5450664 143863 + lincRNA gene predicted gene, 41414
Tssr136908 16 5306827 to 5306865 38 + TSS region transcription start site region 136908
n-R5s30 16 5324036 to 5324157 121 - rRNA gene nuclear encoded rRNA 5S 30
Tssr139844 16 5367859 to 5367868 9 - TSS region transcription start site region 139844
Tssr139845 16 5371254 to 5371264 10 - TSS region transcription start site region 139845
Tssr136909 16 5375082 to 5375095 13 + TSS region transcription start site region 136909
Tssr136910 16 5375097 to 5375106 9 + TSS region transcription start site region 136910
Tssr136911 16 5378142 to 5378153 11 + TSS region transcription start site region 136911
Tssr136912 16 5378155 to 5378170 15 + TSS region transcription start site region 136912
Tssr136913 16 5382381 to 5382388 7 + TSS region transcription start site region 136913
Tssr136914 16 5393694 to 5393708 14 + TSS region transcription start site region 136914
Tssr136915 16 5431388 to 5431417 29 + TSS region transcription start site region 136915
Tssr136916 16 5431475 to 5431486 11 + TSS region transcription start site region 136916
Tssr139846 16 5431773 to 5431813 40 - TSS region transcription start site region 139846
Tssr139847 16 5445867 to 5445877 10 - TSS region transcription start site region 139847
Cpgi7933 16 5473591 to 5473768 177 CpG island CpG island 7933
Tssr136917 16 5476342 to 5476346 4 + TSS region transcription start site region 136917
Gm41416 16 5483865 to 5484954 1089 + lncRNA gene predicted gene, 41416
Tssr4783 16 5608213 to 5608214 1 + TSS region transcription start site region 4783
D16Mit182 16 5682496 to 5682710 214 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 182
Loca2 16 5682496 to 5682710 214 QTL locomotor activity 2
D16Mit107 16 5702256 to 5702454 198 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 107
Adip25 16 5702256 to 5702454 198 QTL adiposity 25
D16Mit154 16 5706546 to 5706689 143 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 154
D16Mit79 16 5714609 to 5714745 136 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 79
D16Mit8 16 5736119 to 5736396 277 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 8