Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 16:50588447-50978460

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27 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
D16Mit43 16 50589267 to 50589362 95 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 43
Ccdc54 16 50589859 to 50591154 1295 - protein coding gene coiled-coil domain containing 54
4930542D17Rik 16 50590503 to 50654166 63663 + antisense lncRNA gene RIKEN cDNA 4930542D17 gene
Tssr141381 16 50591064 to 50591067 3 - TSS region transcription start site region 141381
Tssr141382 16 50591072 to 50591119 47 - TSS region transcription start site region 141382
Tssr141383 16 50591121 to 50591132 11 - TSS region transcription start site region 141383
Gm9575 16 50665008 to 50666346 1338 - pseudogene predicted gene 9575
Cpgi8312 16 50668575 to 50668899 324 CpG island CpG island 8312
Tssr141384 16 50721440 to 50721476 36 - TSS region transcription start site region 141384
Tssr141385 16 50721540 to 50721548 8 - TSS region transcription start site region 141385
Tssr141386 16 50722791 to 50722802 11 - TSS region transcription start site region 141386
Tssr141387 16 50722824 to 50722852 28 - TSS region transcription start site region 141387
Tssr141388 16 50722872 to 50722887 15 - TSS region transcription start site region 141388
Tssr141389 16 50723382 to 50723397 15 - TSS region transcription start site region 141389
Dubr 16 50726751 to 50732773 6022 - lincRNA gene Dppa2 upstream binding RNA
Mir6363 16 50727132 to 50727245 113 + miRNA gene microRNA 6363
Cpgi8313 16 50732180 to 50733017 837 CpG island CpG island 8313
Tssr141390 16 50732209 to 50732220 11 - TSS region transcription start site region 141390
Tssr141391 16 50732680 to 50732701 21 - TSS region transcription start site region 141391
Tssr141392 16 50732707 to 50732775 68 - TSS region transcription start site region 141392
Tssr138759 16 50732825 to 50732866 41 + TSS region transcription start site region 138759
5830440H09Rik 16 50752339 to 50753475 1136 unclassified gene RIKEN cDNA 5830440H09 gene
Tssr138760 16 50783391 to 50783423 32 + TSS region transcription start site region 138760
1700116B05Rik 16 50783409 to 50784091 682 + lincRNA gene RIKEN cDNA 1700116B05 gene
Tssr138761 16 50783434 to 50783444 10 + TSS region transcription start site region 138761
Tssr138762 16 50783447 to 50783460 13 + TSS region transcription start site region 138762
Gm24925 16 50920542 to 50920648 106 - snRNA gene predicted gene, 24925