Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 16:50477452-52248832

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80 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Loh2 16 21827564 to 51386028 29558464 heritable phenotypic marker loss of heterozygosity, region 2
Tssr138755 16 50478934 to 50478948 14 + TSS region transcription start site region 138755
Gm32231 16 50478946 to 50481695 2749 + lncRNA gene predicted gene, 32231
Gm41459 16 50513432 to 50520099 6667 - lncRNA gene predicted gene, 41459
Tssr4909 16 50513539 to 50513542 3 - TSS region transcription start site region 4909
Tssr138756 16 50526213 to 50526226 13 + TSS region transcription start site region 138756
G730013B05Rik 16 50526245 to 50559459 33214 + lincRNA gene RIKEN cDNA G730013B05 gene
Cpgi8311 16 50528473 to 50530385 1912 CpG island CpG island 8311
Tssr138757 16 50529063 to 50529071 8 + TSS region transcription start site region 138757
Tssr141376 16 50529555 to 50529569 14 - TSS region transcription start site region 141376
Tssr138758 16 50552107 to 50552121 14 + TSS region transcription start site region 138758
Tssr141377 16 50552250 to 50552292 42 - TSS region transcription start site region 141377
Tssr141378 16 50578407 to 50578420 13 - TSS region transcription start site region 141378
Tssr141379 16 50578496 to 50578509 13 - TSS region transcription start site region 141379
Tssr141380 16 50578529 to 50578540 11 - TSS region transcription start site region 141380
D16Mit43 16 50589267 to 50589362 95 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 43
Ccdc54 16 50589859 to 50591154 1295 - protein coding gene coiled-coil domain containing 54
4930542D17Rik 16 50590503 to 50654166 63663 + antisense lncRNA gene RIKEN cDNA 4930542D17 gene
Tssr141381 16 50591064 to 50591067 3 - TSS region transcription start site region 141381
Tssr141382 16 50591072 to 50591119 47 - TSS region transcription start site region 141382
Tssr141383 16 50591121 to 50591132 11 - TSS region transcription start site region 141383
Gm9575 16 50665008 to 50666346 1338 - pseudogene predicted gene 9575
Cpgi8312 16 50668575 to 50668899 324 CpG island CpG island 8312
Tssr141384 16 50721440 to 50721476 36 - TSS region transcription start site region 141384
Tssr141385 16 50721540 to 50721548 8 - TSS region transcription start site region 141385
Tssr141386 16 50722791 to 50722802 11 - TSS region transcription start site region 141386
Tssr141387 16 50722824 to 50722852 28 - TSS region transcription start site region 141387
Tssr141388 16 50722872 to 50722887 15 - TSS region transcription start site region 141388
Tssr141389 16 50723382 to 50723397 15 - TSS region transcription start site region 141389
Dubr 16 50726751 to 50732773 6022 - lincRNA gene Dppa2 upstream binding RNA
Mir6363 16 50727132 to 50727245 113 + miRNA gene microRNA 6363
Cpgi8313 16 50732180 to 50733017 837 CpG island CpG island 8313
Tssr141390 16 50732209 to 50732220 11 - TSS region transcription start site region 141390
Tssr141391 16 50732680 to 50732701 21 - TSS region transcription start site region 141391
Tssr141392 16 50732707 to 50732775 68 - TSS region transcription start site region 141392
Tssr138759 16 50732825 to 50732866 41 + TSS region transcription start site region 138759
5830440H09Rik 16 50752339 to 50753475 1136 unclassified gene RIKEN cDNA 5830440H09 gene
Tssr138760 16 50783391 to 50783423 32 + TSS region transcription start site region 138760
1700116B05Rik 16 50783409 to 50784091 682 + lincRNA gene RIKEN cDNA 1700116B05 gene
Tssr138761 16 50783434 to 50783444 10 + TSS region transcription start site region 138761
Tssr138762 16 50783447 to 50783460 13 + TSS region transcription start site region 138762
Gm24925 16 50920542 to 50920648 106 - snRNA gene predicted gene, 24925
Gm7280 16 51016494 to 51016907 413 - pseudogene predicted gene 7280
Gm32431 16 51051130 to 51053004 1874 + lincRNA gene predicted gene, 32431
D16Mit168 16 51298497 to 51298646 149 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 168
D16Mit157 16 51315305 to 51315435 130 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 157
Gm6767 16 51362452 to 51363832 1380 - pseudogene predicted gene 6767
Tssr141393 16 51363889 to 51363901 12 - TSS region transcription start site region 141393
D16Mit14 16 51385838 to 51386028 190 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 14
Gm49608 16 51416634 to 51416948 314 - pseudogene predicted gene, 49608
Milac7 16 51442133 to 51442133 0 QTL methamphetamine induced locomotor activation 7
D16Mit113 16 51455690 to 51455825 135 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 113
Tssr141394 16 51686759 to 51686767 8 - TSS region transcription start site region 141394
Tssr141395 16 51736241 to 51736245 4 - TSS region transcription start site region 141395
Tssr141396 16 51930006 to 51930023 17 - TSS region transcription start site region 141396
Gm29686 16 51981033 to 51987287 6254 - lncRNA gene predicted gene, 29686
Cpgi8314 16 52031157 to 52032353 1196 CpG island CpG island 8314
Cblb 16 52031230 to 52208047 176817 + protein coding gene Casitas B-lineage lymphoma b
Tssr138763 16 52031324 to 52031342 18 + TSS region transcription start site region 138763
Tssr138764 16 52031555 to 52031570 15 + TSS region transcription start site region 138764
Tssr138765 16 52031585 to 52031646 61 + TSS region transcription start site region 138765
Tssr138766 16 52032071 to 52032126 55 + TSS region transcription start site region 138766
Tssr138767 16 52032557 to 52032572 15 + TSS region transcription start site region 138767
Tssr138768 16 52033931 to 52033937 6 + TSS region transcription start site region 138768
Tssr138769 16 52049651 to 52049662 11 + TSS region transcription start site region 138769
Tssr138770 16 52049681 to 52049689 8 + TSS region transcription start site region 138770
Tssr138771 16 52060539 to 52060548 9 + TSS region transcription start site region 138771
Tssr138772 16 52074325 to 52074349 24 + TSS region transcription start site region 138772
Tssr138773 16 52074424 to 52074441 17 + TSS region transcription start site region 138773
Gm23513 16 52105015 to 52105147 132 - snoRNA gene predicted gene, 23513
Tssr138774 16 52129734 to 52129743 9 + TSS region transcription start site region 138774
Tssr141397 16 52142954 to 52142963 9 - TSS region transcription start site region 141397
Tssr138775 16 52144086 to 52144087 1 + TSS region transcription start site region 138775
Tssr138776 16 52146584 to 52146589 5 + TSS region transcription start site region 138776
Tssr141398 16 52147391 to 52147402 11 - TSS region transcription start site region 141398
Tssr141399 16 52147498 to 52147514 16 - TSS region transcription start site region 141399
Tssr138777 16 52147672 to 52147677 5 + TSS region transcription start site region 138777
Tssr138778 16 52176083 to 52176086 3 + TSS region transcription start site region 138778
Cpgi8315 16 52198260 to 52198696 436 CpG island CpG island 8315
Tssr138779 16 52206799 to 52206837 38 + TSS region transcription start site region 138779