Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 16:50397791-51047802

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52 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Bbx 16 50191844 to 50432390 240546 - protein coding gene bobby sox HMG box containing
Tssr141369 16 50420123 to 50420133 10 - TSS region transcription start site region 141369
Cpgi8309 16 50429239 to 50430458 1219 CpG island CpG island 8309
Tssr141370 16 50429866 to 50429884 18 - TSS region transcription start site region 141370
Tssr141371 16 50430349 to 50430363 14 - TSS region transcription start site region 141371
Cpgi8310 16 50431071 to 50432787 1716 CpG island CpG island 8310
Tssr141372 16 50432174 to 50432191 17 - TSS region transcription start site region 141372
Tssr141373 16 50432294 to 50432301 7 - TSS region transcription start site region 141373
Tssr141374 16 50432303 to 50432314 11 - TSS region transcription start site region 141374
Tssr141375 16 50432354 to 50432409 55 - TSS region transcription start site region 141375
Tssr138755 16 50478934 to 50478948 14 + TSS region transcription start site region 138755
Gm32231 16 50478946 to 50481695 2749 + lncRNA gene predicted gene, 32231
Gm41459 16 50513432 to 50520099 6667 - lncRNA gene predicted gene, 41459
Tssr4909 16 50513539 to 50513542 3 - TSS region transcription start site region 4909
Tssr138756 16 50526213 to 50526226 13 + TSS region transcription start site region 138756
G730013B05Rik 16 50526245 to 50559459 33214 + lincRNA gene RIKEN cDNA G730013B05 gene
Cpgi8311 16 50528473 to 50530385 1912 CpG island CpG island 8311
Tssr138757 16 50529063 to 50529071 8 + TSS region transcription start site region 138757
Tssr141376 16 50529555 to 50529569 14 - TSS region transcription start site region 141376
Tssr138758 16 50552107 to 50552121 14 + TSS region transcription start site region 138758
Tssr141377 16 50552250 to 50552292 42 - TSS region transcription start site region 141377
Tssr141378 16 50578407 to 50578420 13 - TSS region transcription start site region 141378
Tssr141379 16 50578496 to 50578509 13 - TSS region transcription start site region 141379
Tssr141380 16 50578529 to 50578540 11 - TSS region transcription start site region 141380
D16Mit43 16 50589267 to 50589362 95 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 43
Ccdc54 16 50589859 to 50591154 1295 - protein coding gene coiled-coil domain containing 54
4930542D17Rik 16 50590503 to 50654166 63663 + antisense lncRNA gene RIKEN cDNA 4930542D17 gene
Tssr141381 16 50591064 to 50591067 3 - TSS region transcription start site region 141381
Tssr141382 16 50591072 to 50591119 47 - TSS region transcription start site region 141382
Tssr141383 16 50591121 to 50591132 11 - TSS region transcription start site region 141383
Gm9575 16 50665008 to 50666346 1338 - pseudogene predicted gene 9575
Cpgi8312 16 50668575 to 50668899 324 CpG island CpG island 8312
Tssr141384 16 50721440 to 50721476 36 - TSS region transcription start site region 141384
Tssr141385 16 50721540 to 50721548 8 - TSS region transcription start site region 141385
Tssr141386 16 50722791 to 50722802 11 - TSS region transcription start site region 141386
Tssr141387 16 50722824 to 50722852 28 - TSS region transcription start site region 141387
Tssr141388 16 50722872 to 50722887 15 - TSS region transcription start site region 141388
Tssr141389 16 50723382 to 50723397 15 - TSS region transcription start site region 141389
Dubr 16 50726751 to 50732773 6022 - lincRNA gene Dppa2 upstream binding RNA
Mir6363 16 50727132 to 50727245 113 + miRNA gene microRNA 6363
Cpgi8313 16 50732180 to 50733017 837 CpG island CpG island 8313
Tssr141390 16 50732209 to 50732220 11 - TSS region transcription start site region 141390
Tssr141391 16 50732680 to 50732701 21 - TSS region transcription start site region 141391
Tssr141392 16 50732707 to 50732775 68 - TSS region transcription start site region 141392
Tssr138759 16 50732825 to 50732866 41 + TSS region transcription start site region 138759
5830440H09Rik 16 50752339 to 50753475 1136 unclassified gene RIKEN cDNA 5830440H09 gene
Tssr138760 16 50783391 to 50783423 32 + TSS region transcription start site region 138760
1700116B05Rik 16 50783409 to 50784091 682 + lincRNA gene RIKEN cDNA 1700116B05 gene
Tssr138761 16 50783434 to 50783444 10 + TSS region transcription start site region 138761
Tssr138762 16 50783447 to 50783460 13 + TSS region transcription start site region 138762
Gm24925 16 50920542 to 50920648 106 - snRNA gene predicted gene, 24925
Gm7280 16 51016494 to 51016907 413 - pseudogene predicted gene 7280