Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 16:49907890-50477899

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56 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cd47 16 49855253 to 49912424 57171 + protein coding gene CD47 antigen (Rh-related antigen, integrin-associated signal transducer)
Tssr138740 16 49908362 to 49908368 6 + TSS region transcription start site region 138740
Tssr138741 16 49908991 to 49908995 4 + TSS region transcription start site region 138741
Tssr138742 16 49911454 to 49911476 22 + TSS region transcription start site region 138742
Tssr138743 16 49911874 to 49911894 20 + TSS region transcription start site region 138743
Tssr138744 16 49911985 to 49912008 23 + TSS region transcription start site region 138744
Tssr138745 16 49912870 to 49912875 5 + TSS region transcription start site region 138745
Tssr4904 16 49913165 to 49913167 2 + TSS region transcription start site region 4904
Tssr4905 16 49913252 to 49913260 8 + TSS region transcription start site region 4905
Tssr4906 16 49913292 to 49913297 5 + TSS region transcription start site region 4906
Tssr4907 16 49913536 to 49913556 20 + TSS region transcription start site region 4907
Tssr138746 16 49913578 to 49913594 16 + TSS region transcription start site region 138746
Tssr4908 16 49913715 to 49913756 41 + TSS region transcription start site region 4908
Gm5486 16 49925912 to 49970258 44346 - unclassified gene predicted gene 5486
Tssr138747 16 49955791 to 49955795 4 + TSS region transcription start site region 138747
Tssr138748 16 49955808 to 49955834 26 + TSS region transcription start site region 138748
Gm19723 16 49955827 to 49958914 3087 + lncRNA gene predicted gene, 19723
Tssr138749 16 49955855 to 49955856 1 + TSS region transcription start site region 138749
Tssr138750 16 49970774 to 49970786 12 + TSS region transcription start site region 138750
Gm6936 16 49980460 to 49997475 17015 + lncRNA gene predicted gene 6936
Gm4827 16 50019658 to 50072852 53194 - lncRNA gene predicted gene 4827
Tssr138751 16 50044238 to 50044258 20 + TSS region transcription start site region 138751
Tssr138752 16 50044362 to 50044374 12 + TSS region transcription start site region 138752
Cpgi8308 16 50045810 to 50046256 446 CpG island CpG island 8308
Tssr141353 16 50046243 to 50046251 8 - TSS region transcription start site region 141353
Tssr141354 16 50046283 to 50046294 11 - TSS region transcription start site region 141354
Tssr138753 16 50046428 to 50046448 20 + TSS region transcription start site region 138753
Gm32101 16 50049630 to 50051658 2028 + lncRNA gene predicted gene, 32101
Tssr141355 16 50070709 to 50070719 10 - TSS region transcription start site region 141355
Tssr141356 16 50070735 to 50070755 20 - TSS region transcription start site region 141356
Tssr141357 16 50070855 to 50070870 15 - TSS region transcription start site region 141357
Tssr141358 16 50070878 to 50070904 26 - TSS region transcription start site region 141358
Tssr138754 16 50072605 to 50072610 5 + TSS region transcription start site region 138754
Gm8824 16 50111073 to 50112062 989 + pseudogene predicted gene 8824
Tssr141359 16 50168958 to 50168960 2 - TSS region transcription start site region 141359
Bbx 16 50191844 to 50432390 240546 - protein coding gene bobby sox HMG box containing
Tssr141360 16 50192716 to 50192734 18 - TSS region transcription start site region 141360
Tssr141361 16 50192810 to 50192835 25 - TSS region transcription start site region 141361
Tssr141362 16 50192890 to 50192899 9 - TSS region transcription start site region 141362
Tssr141363 16 50262450 to 50262485 35 - TSS region transcription start site region 141363
A930011E06Rik 16 50329594 to 50330754 1160 unclassified gene RIKEN cDNA A930011E06 gene
Tssr141364 16 50330973 to 50330978 5 - TSS region transcription start site region 141364
Tssr141365 16 50330979 to 50330980 1 - TSS region transcription start site region 141365
Tssr141366 16 50330987 to 50331017 30 - TSS region transcription start site region 141366
Tssr141367 16 50331022 to 50331065 43 - TSS region transcription start site region 141367
Tssr141368 16 50364248 to 50364298 50 - TSS region transcription start site region 141368
A730021G18Rik 16 50372625 to 50377048 4423 unclassified gene RIKEN cDNA A730021G18 gene
Tssr141369 16 50420123 to 50420133 10 - TSS region transcription start site region 141369
Cpgi8309 16 50429239 to 50430458 1219 CpG island CpG island 8309
Tssr141370 16 50429866 to 50429884 18 - TSS region transcription start site region 141370
Tssr141371 16 50430349 to 50430363 14 - TSS region transcription start site region 141371
Cpgi8310 16 50431071 to 50432787 1716 CpG island CpG island 8310
Tssr141372 16 50432174 to 50432191 17 - TSS region transcription start site region 141372
Tssr141373 16 50432294 to 50432301 7 - TSS region transcription start site region 141373
Tssr141374 16 50432303 to 50432314 11 - TSS region transcription start site region 141374
Tssr141375 16 50432354 to 50432409 55 - TSS region transcription start site region 141375