Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 16:4962109-5372271

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78 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Anks3 16 4941436 to 4964205 22769 - protein coding gene ankyrin repeat and sterile alpha motif domain containing 3
Cpgi7925 16 4963829 to 4964845 1016 CpG island CpG island 7925
Tssr4780 16 4964012 to 4964017 5 - TSS region transcription start site region 4780
Tssr139818 16 4964168 to 4964220 52 - TSS region transcription start site region 139818
Tssr136892 16 4964250 to 4964272 22 + TSS region transcription start site region 136892
4930451G09Rik 16 4964289 to 4978962 14673 + protein coding gene RIKEN cDNA 4930451G09 gene
Tssr136893 16 4964564 to 4964605 41 + TSS region transcription start site region 136893
Sept12 16 4986858 to 4997852 10994 - protein coding gene septin 12
Tssr136894 16 4987449 to 4987465 16 + TSS region transcription start site region 136894
Tssr139819 16 4997782 to 4997831 49 - TSS region transcription start site region 139819
Tssr136895 16 5007283 to 5007293 10 + TSS region transcription start site region 136895
Smim22 16 5007288 to 5008309 1021 + protein coding gene small integral membrane protein 22
Tssr136896 16 5007306 to 5007341 35 + TSS region transcription start site region 136896
Tssr136897 16 5007363 to 5007376 13 + TSS region transcription start site region 136897
Tssr136898 16 5007534 to 5007550 16 + TSS region transcription start site region 136898
Tssr136899 16 5007563 to 5007593 30 + TSS region transcription start site region 136899
Tssr136900 16 5007659 to 5007693 34 + TSS region transcription start site region 136900
Gm42477 16 5008370 to 5013418 5048 + antisense lncRNA gene predicted gene 42477
Rogdi 16 5008730 to 5013553 4823 - protein coding gene rogdi homolog
Tssr139820 16 5009158 to 5009197 39 - TSS region transcription start site region 139820
Tssr139821 16 5010070 to 5010125 55 - TSS region transcription start site region 139821
Tssr139822 16 5010630 to 5010640 10 - TSS region transcription start site region 139822
Tssr139823 16 5010643 to 5010672 29 - TSS region transcription start site region 139823
Tssr139824 16 5011756 to 5011778 22 - TSS region transcription start site region 139824
Tssr139825 16 5012735 to 5012745 10 - TSS region transcription start site region 139825
Tssr139826 16 5012752 to 5012777 25 - TSS region transcription start site region 139826
Cpgi7926 16 5013026 to 5013831 805 CpG island CpG island 7926
Tssr139827 16 5013505 to 5013558 53 - TSS region transcription start site region 139827
Tssr139828 16 5013560 to 5013569 9 - TSS region transcription start site region 139828
Glyr1 16 5013909 to 5049863 35954 - protein coding gene glyoxylate reductase 1 homolog (Arabidopsis)
Tssr139829 16 5040544 to 5040548 4 - TSS region transcription start site region 139829
Cpgi7927 16 5049286 to 5051052 1766 CpG island CpG island 7927
Tssr4781 16 5049367 to 5049375 8 + TSS region transcription start site region 4781
Tssr139830 16 5049839 to 5049879 40 - TSS region transcription start site region 139830
Tssr139831 16 5049882 to 5049889 7 - TSS region transcription start site region 139831
Tssr136901 16 5050012 to 5050122 110 + TSS region transcription start site region 136901
Ubn1 16 5050057 to 5086289 36232 + protein coding gene ubinuclein 1
Tssr136902 16 5050199 to 5050210 11 + TSS region transcription start site region 136902
Tssr139832 16 5050781 to 5050795 14 - TSS region transcription start site region 139832
Gm23483 16 5060775 to 5060882 107 - snRNA gene predicted gene, 23483
Tssr136903 16 5080947 to 5080952 5 + TSS region transcription start site region 136903
Ppl 16 5086291 to 5132421 46130 - protein coding gene periplakin
Tssr139833 16 5089782 to 5089794 12 - TSS region transcription start site region 139833
Cpgi7928 16 5131622 to 5133098 1476 CpG island CpG island 7928
Tssr139834 16 5132458 to 5132483 25 - TSS region transcription start site region 139834
Tssr139835 16 5132488 to 5132513 25 - TSS region transcription start site region 139835
Tssr136904 16 5146941 to 5146959 18 + TSS region transcription start site region 136904
Tssr136905 16 5146960 to 5146981 21 + TSS region transcription start site region 136905
Tssr136906 16 5146985 to 5146996 11 + TSS region transcription start site region 136906
Sec14l5 16 5147109 to 5187271 40162 + protein coding gene SEC14-like lipid binding 5
D16Mit207 16 5193429 to 5193564 135 DNA segment DNA Segment, Chr 16, Massachusetts Institute of Technology-207
Nagpa 16 5195289 to 5204012 8723 - protein coding gene N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase
Tssr139836 16 5195597 to 5195622 25 - TSS region transcription start site region 139836
Tssr139837 16 5195935 to 5195949 14 - TSS region transcription start site region 139837
Tssr139838 16 5196491 to 5196493 2 - TSS region transcription start site region 139838
Cpgi7929 16 5203068 to 5204100 1032 CpG island CpG island 7929
Tssr139839 16 5203947 to 5203964 17 - TSS region transcription start site region 139839
Tssr139840 16 5203981 to 5204017 36 - TSS region transcription start site region 139840
AU021092 16 5211823 to 5222299 10476 - protein coding gene expressed sequence AU021092
Mir6364 16 5215789 to 5215874 85 - miRNA gene microRNA 6364
Tssr139841 16 5222257 to 5222299 42 - TSS region transcription start site region 139841
Gm23689 16 5223364 to 5223473 109 + miRNA gene predicted gene, 23689
Tssr139842 16 5227825 to 5227830 5 - TSS region transcription start site region 139842
Gm26095 16 5227920 to 5228029 109 + miRNA gene predicted gene, 26095
Cpgi7930 16 5233504 to 5234151 647 CpG island CpG island 7930
Tssr136907 16 5233615 to 5233653 38 + TSS region transcription start site region 136907
Alg1 16 5233621 to 5244909 11288 + protein coding gene asparagine-linked glycosylation 1 (beta-1,4-mannosyltransferase)
Eef2kmt 16 5244155 to 5255956 11801 - protein coding gene eukaryotic elongation factor 2 lysine methyltransferase
Gm15983 16 5254786 to 5289621 34835 + antisense lncRNA gene predicted gene 15983
Cpgi7931 16 5255411 to 5256591 1180 CpG island CpG island 7931
Tssr139843 16 5255923 to 5255965 42 - TSS region transcription start site region 139843
Tssr4782 16 5305323 to 5305327 4 + TSS region transcription start site region 4782
Cpgi7932 16 5306728 to 5307307 579 CpG island CpG island 7932
Gm41414 16 5306801 to 5450664 143863 + lincRNA gene predicted gene, 41414
Tssr136908 16 5306827 to 5306865 38 + TSS region transcription start site region 136908
n-R5s30 16 5324036 to 5324157 121 - rRNA gene nuclear encoded rRNA 5S 30
Tssr139844 16 5367859 to 5367868 9 - TSS region transcription start site region 139844
Tssr139845 16 5371254 to 5371264 10 - TSS region transcription start site region 139845