Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 16:49565838-53206028

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332 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Loh2 16 21827564 to 51386028 29558464 heritable phenotypic marker loss of heterozygosity, region 2
Gm35938 16 49562934 to 49568000 5066 - protein coding gene predicted gene, 35938
Gm31494 16 49572319 to 49644652 72333 - lncRNA gene predicted gene, 31494
D16Mit42 16 49620462 to 49620585 123 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 42
D16Mit196 16 49662817 to 49662939 122 DNA segment DNA Segment, Chr 16, Massachusetts Institute of Technology 196
Cpgi8306 16 49698950 to 49699649 699 CpG island CpG island 8306
Tssr141323 16 49699007 to 49699022 15 - TSS region transcription start site region 141323
Tssr138710 16 49699198 to 49699299 101 + TSS region transcription start site region 138710
Ift57 16 49699294 to 49765126 65832 + protein coding gene intraflagellar transport 57
Tssr138711 16 49739223 to 49739226 3 + TSS region transcription start site region 138711
Tssr138712 16 49757364 to 49757369 5 + TSS region transcription start site region 138712
Gm15518 16 49759703 to 49775922 16219 - antisense lncRNA gene predicted gene 15518
Tssr141324 16 49768695 to 49768709 14 - TSS region transcription start site region 141324
Tssr141325 16 49768727 to 49768738 11 - TSS region transcription start site region 141325
Tssr141326 16 49768751 to 49768779 28 - TSS region transcription start site region 141326
Tssr141327 16 49768791 to 49768802 11 - TSS region transcription start site region 141327
Tssr141328 16 49769794 to 49769822 28 - TSS region transcription start site region 141328
Tssr138713 16 49770612 to 49770623 11 + TSS region transcription start site region 138713
Tssr141329 16 49770790 to 49770803 13 - TSS region transcription start site region 141329
Tssr141330 16 49770805 to 49770817 12 - TSS region transcription start site region 141330
Tssr141331 16 49770818 to 49770836 18 - TSS region transcription start site region 141331
Tssr141332 16 49770846 to 49770863 17 - TSS region transcription start site region 141332
Tssr141333 16 49771681 to 49771694 13 - TSS region transcription start site region 141333
Tssr141334 16 49771836 to 49771848 12 - TSS region transcription start site region 141334
Tssr141335 16 49772770 to 49772785 15 - TSS region transcription start site region 141335
Tssr138714 16 49772826 to 49772840 14 + TSS region transcription start site region 138714
Tssr4897 16 49775236 to 49775240 4 + TSS region transcription start site region 4897
D16Mit63 16 49777226 to 49777427 201 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 63
Tssr138715 16 49781808 to 49781827 19 + TSS region transcription start site region 138715
Tssr138716 16 49782030 to 49782045 15 + TSS region transcription start site region 138716
Tssr141336 16 49783439 to 49783446 7 - TSS region transcription start site region 141336
Tssr141337 16 49790951 to 49790973 22 - TSS region transcription start site region 141337
Tssr138717 16 49791159 to 49791169 10 + TSS region transcription start site region 138717
Tssr138718 16 49791171 to 49791185 14 + TSS region transcription start site region 138718
Tssr141338 16 49792515 to 49792528 13 - TSS region transcription start site region 141338
Tssr4898 16 49792597 to 49792615 18 - TSS region transcription start site region 4898
Tssr141339 16 49792780 to 49792784 4 - TSS region transcription start site region 141339
Tssr141340 16 49799785 to 49799806 21 - TSS region transcription start site region 141340
Gm16619 16 49800226 to 49848427 48201 + lincRNA gene predicted gene, 16619
Tssr138719 16 49800520 to 49800547 27 + TSS region transcription start site region 138719
Tssr141341 16 49801098 to 49801122 24 - TSS region transcription start site region 141341
Tssr141342 16 49801640 to 49801672 32 - TSS region transcription start site region 141342
Gm4633 16 49811731 to 49855213 43482 - unclassified gene predicted gene 4633
Tssr141343 16 49839826 to 49839848 22 - TSS region transcription start site region 141343
Tssr141344 16 49840028 to 49840046 18 - TSS region transcription start site region 141344
Tssr138720 16 49840237 to 49840249 12 + TSS region transcription start site region 138720
Tssr138721 16 49840363 to 49840372 9 + TSS region transcription start site region 138721
Tssr138722 16 49843045 to 49843055 10 + TSS region transcription start site region 138722
Tssr141345 16 49847648 to 49847676 28 - TSS region transcription start site region 141345
Tssr141346 16 49848068 to 49848085 17 - TSS region transcription start site region 141346
Tssr141347 16 49848779 to 49848794 15 - TSS region transcription start site region 141347
Tssr138723 16 49853154 to 49853177 23 + TSS region transcription start site region 138723
Tssr138724 16 49854347 to 49854359 12 + TSS region transcription start site region 138724
Tssr138725 16 49854537 to 49854544 7 + TSS region transcription start site region 138725
Tssr138726 16 49855089 to 49855100 11 + TSS region transcription start site region 138726
Tssr4899 16 49855106 to 49855116 10 + TSS region transcription start site region 4899
Cpgi8307 16 49855114 to 49856222 1108 CpG island CpG island 8307
Tssr138727 16 49855119 to 49855130 11 + TSS region transcription start site region 138727
Cd47 16 49855253 to 49912424 57171 + protein coding gene CD47 antigen (Rh-related antigen, integrin-associated signal transducer)
Tssr4900 16 49855260 to 49855266 6 + TSS region transcription start site region 4900
Tssr141348 16 49855297 to 49855312 15 - TSS region transcription start site region 141348
Tssr138728 16 49855349 to 49855360 11 + TSS region transcription start site region 138728
Tssr4901 16 49855370 to 49855387 17 + TSS region transcription start site region 4901
Tssr4902 16 49855485 to 49855497 12 + TSS region transcription start site region 4902
Tssr141349 16 49855517 to 49855572 55 - TSS region transcription start site region 141349
Tssr138729 16 49855624 to 49855722 98 + TSS region transcription start site region 138729
Tssr138730 16 49855745 to 49855756 11 + TSS region transcription start site region 138730
Tssr4903 16 49855767 to 49855806 39 + TSS region transcription start site region 4903
Tssr141350 16 49855832 to 49855843 11 - TSS region transcription start site region 141350
Tssr138731 16 49856072 to 49856112 40 + TSS region transcription start site region 138731
Tssr141351 16 49856116 to 49856128 12 - TSS region transcription start site region 141351
Tssr138732 16 49856218 to 49856250 32 + TSS region transcription start site region 138732
Tssr138733 16 49856306 to 49856331 25 + TSS region transcription start site region 138733
Tssr141352 16 49856347 to 49856380 33 - TSS region transcription start site region 141352
Tssr138734 16 49856558 to 49856569 11 + TSS region transcription start site region 138734
Tssr138735 16 49856596 to 49856619 23 + TSS region transcription start site region 138735
Tssr138736 16 49857880 to 49857890 10 + TSS region transcription start site region 138736
Tssr138737 16 49867853 to 49867868 15 + TSS region transcription start site region 138737
Tssr138738 16 49894207 to 49894220 13 + TSS region transcription start site region 138738
Tssr138739 16 49904736 to 49904747 11 + TSS region transcription start site region 138739
Tssr138740 16 49908362 to 49908368 6 + TSS region transcription start site region 138740
Tssr138741 16 49908991 to 49908995 4 + TSS region transcription start site region 138741
Tssr138742 16 49911454 to 49911476 22 + TSS region transcription start site region 138742
Tssr138743 16 49911874 to 49911894 20 + TSS region transcription start site region 138743
Tssr138744 16 49911985 to 49912008 23 + TSS region transcription start site region 138744
Tssr138745 16 49912870 to 49912875 5 + TSS region transcription start site region 138745
Tssr4904 16 49913165 to 49913167 2 + TSS region transcription start site region 4904
Tssr4905 16 49913252 to 49913260 8 + TSS region transcription start site region 4905
Tssr4906 16 49913292 to 49913297 5 + TSS region transcription start site region 4906
Tssr4907 16 49913536 to 49913556 20 + TSS region transcription start site region 4907
Tssr138746 16 49913578 to 49913594 16 + TSS region transcription start site region 138746
Tssr4908 16 49913715 to 49913756 41 + TSS region transcription start site region 4908
Gm5486 16 49925912 to 49970258 44346 - unclassified gene predicted gene 5486
Tssr138747 16 49955791 to 49955795 4 + TSS region transcription start site region 138747
Tssr138748 16 49955808 to 49955834 26 + TSS region transcription start site region 138748
Gm19723 16 49955827 to 49958914 3087 + lncRNA gene predicted gene, 19723
Tssr138749 16 49955855 to 49955856 1 + TSS region transcription start site region 138749
Tssr138750 16 49970774 to 49970786 12 + TSS region transcription start site region 138750
Gm6936 16 49980460 to 49997475 17015 + lncRNA gene predicted gene 6936
Gm4827 16 50019658 to 50072852 53194 - lncRNA gene predicted gene 4827
Tssr138751 16 50044238 to 50044258 20 + TSS region transcription start site region 138751
Tssr138752 16 50044362 to 50044374 12 + TSS region transcription start site region 138752
Cpgi8308 16 50045810 to 50046256 446 CpG island CpG island 8308
Tssr141353 16 50046243 to 50046251 8 - TSS region transcription start site region 141353
Tssr141354 16 50046283 to 50046294 11 - TSS region transcription start site region 141354
Tssr138753 16 50046428 to 50046448 20 + TSS region transcription start site region 138753
Gm32101 16 50049630 to 50051658 2028 + lncRNA gene predicted gene, 32101
Tssr141355 16 50070709 to 50070719 10 - TSS region transcription start site region 141355
Tssr141356 16 50070735 to 50070755 20 - TSS region transcription start site region 141356
Tssr141357 16 50070855 to 50070870 15 - TSS region transcription start site region 141357
Tssr141358 16 50070878 to 50070904 26 - TSS region transcription start site region 141358
Tssr138754 16 50072605 to 50072610 5 + TSS region transcription start site region 138754
Gm8824 16 50111073 to 50112062 989 + pseudogene predicted gene 8824
Tssr141359 16 50168958 to 50168960 2 - TSS region transcription start site region 141359
Bbx 16 50191844 to 50432390 240546 - protein coding gene bobby sox HMG box containing
Tssr141360 16 50192716 to 50192734 18 - TSS region transcription start site region 141360
Tssr141361 16 50192810 to 50192835 25 - TSS region transcription start site region 141361
Tssr141362 16 50192890 to 50192899 9 - TSS region transcription start site region 141362
Tssr141363 16 50262450 to 50262485 35 - TSS region transcription start site region 141363
A930011E06Rik 16 50329594 to 50330754 1160 unclassified gene RIKEN cDNA A930011E06 gene
Tssr141364 16 50330973 to 50330978 5 - TSS region transcription start site region 141364
Tssr141365 16 50330979 to 50330980 1 - TSS region transcription start site region 141365
Tssr141366 16 50330987 to 50331017 30 - TSS region transcription start site region 141366
Tssr141367 16 50331022 to 50331065 43 - TSS region transcription start site region 141367
Tssr141368 16 50364248 to 50364298 50 - TSS region transcription start site region 141368
A730021G18Rik 16 50372625 to 50377048 4423 unclassified gene RIKEN cDNA A730021G18 gene
Tssr141369 16 50420123 to 50420133 10 - TSS region transcription start site region 141369
Cpgi8309 16 50429239 to 50430458 1219 CpG island CpG island 8309
Tssr141370 16 50429866 to 50429884 18 - TSS region transcription start site region 141370
Tssr141371 16 50430349 to 50430363 14 - TSS region transcription start site region 141371
Cpgi8310 16 50431071 to 50432787 1716 CpG island CpG island 8310
Tssr141372 16 50432174 to 50432191 17 - TSS region transcription start site region 141372
Tssr141373 16 50432294 to 50432301 7 - TSS region transcription start site region 141373
Tssr141374 16 50432303 to 50432314 11 - TSS region transcription start site region 141374
Tssr141375 16 50432354 to 50432409 55 - TSS region transcription start site region 141375
Tssr138755 16 50478934 to 50478948 14 + TSS region transcription start site region 138755
Gm32231 16 50478946 to 50481695 2749 + lncRNA gene predicted gene, 32231
Gm41459 16 50513432 to 50520099 6667 - lncRNA gene predicted gene, 41459
Tssr4909 16 50513539 to 50513542 3 - TSS region transcription start site region 4909
Tssr138756 16 50526213 to 50526226 13 + TSS region transcription start site region 138756
G730013B05Rik 16 50526245 to 50559459 33214 + lincRNA gene RIKEN cDNA G730013B05 gene
Cpgi8311 16 50528473 to 50530385 1912 CpG island CpG island 8311
Tssr138757 16 50529063 to 50529071 8 + TSS region transcription start site region 138757
Tssr141376 16 50529555 to 50529569 14 - TSS region transcription start site region 141376
Tssr138758 16 50552107 to 50552121 14 + TSS region transcription start site region 138758
Tssr141377 16 50552250 to 50552292 42 - TSS region transcription start site region 141377
Tssr141378 16 50578407 to 50578420 13 - TSS region transcription start site region 141378
Tssr141379 16 50578496 to 50578509 13 - TSS region transcription start site region 141379
Tssr141380 16 50578529 to 50578540 11 - TSS region transcription start site region 141380
D16Mit43 16 50589267 to 50589362 95 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 43
Ccdc54 16 50589859 to 50591154 1295 - protein coding gene coiled-coil domain containing 54
4930542D17Rik 16 50590503 to 50654166 63663 + antisense lncRNA gene RIKEN cDNA 4930542D17 gene
Tssr141381 16 50591064 to 50591067 3 - TSS region transcription start site region 141381
Tssr141382 16 50591072 to 50591119 47 - TSS region transcription start site region 141382
Tssr141383 16 50591121 to 50591132 11 - TSS region transcription start site region 141383
Gm9575 16 50665008 to 50666346 1338 - pseudogene predicted gene 9575
Cpgi8312 16 50668575 to 50668899 324 CpG island CpG island 8312
Tssr141384 16 50721440 to 50721476 36 - TSS region transcription start site region 141384
Tssr141385 16 50721540 to 50721548 8 - TSS region transcription start site region 141385
Tssr141386 16 50722791 to 50722802 11 - TSS region transcription start site region 141386
Tssr141387 16 50722824 to 50722852 28 - TSS region transcription start site region 141387
Tssr141388 16 50722872 to 50722887 15 - TSS region transcription start site region 141388
Tssr141389 16 50723382 to 50723397 15 - TSS region transcription start site region 141389
Dubr 16 50726751 to 50732773 6022 - lincRNA gene Dppa2 upstream binding RNA
Mir6363 16 50727132 to 50727245 113 + miRNA gene microRNA 6363
Cpgi8313 16 50732180 to 50733017 837 CpG island CpG island 8313
Tssr141390 16 50732209 to 50732220 11 - TSS region transcription start site region 141390
Tssr141391 16 50732680 to 50732701 21 - TSS region transcription start site region 141391
Tssr141392 16 50732707 to 50732775 68 - TSS region transcription start site region 141392
Tssr138759 16 50732825 to 50732866 41 + TSS region transcription start site region 138759
5830440H09Rik 16 50752339 to 50753475 1136 unclassified gene RIKEN cDNA 5830440H09 gene
Tssr138760 16 50783391 to 50783423 32 + TSS region transcription start site region 138760
1700116B05Rik 16 50783409 to 50784091 682 + lincRNA gene RIKEN cDNA 1700116B05 gene
Tssr138761 16 50783434 to 50783444 10 + TSS region transcription start site region 138761
Tssr138762 16 50783447 to 50783460 13 + TSS region transcription start site region 138762
Gm24925 16 50920542 to 50920648 106 - snRNA gene predicted gene, 24925
Gm7280 16 51016494 to 51016907 413 - pseudogene predicted gene 7280
Gm32431 16 51051130 to 51053004 1874 + lincRNA gene predicted gene, 32431
D16Mit168 16 51298497 to 51298646 149 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 168
D16Mit157 16 51315305 to 51315435 130 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 157
Gm6767 16 51362452 to 51363832 1380 - pseudogene predicted gene 6767
Tssr141393 16 51363889 to 51363901 12 - TSS region transcription start site region 141393
D16Mit14 16 51385838 to 51386028 190 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 14
Gm49608 16 51416634 to 51416948 314 - pseudogene predicted gene, 49608
Milac7 16 51442133 to 51442133 0 QTL methamphetamine induced locomotor activation 7
D16Mit113 16 51455690 to 51455825 135 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 113
Tssr141394 16 51686759 to 51686767 8 - TSS region transcription start site region 141394
Tssr141395 16 51736241 to 51736245 4 - TSS region transcription start site region 141395
Tssr141396 16 51930006 to 51930023 17 - TSS region transcription start site region 141396
Gm29686 16 51981033 to 51987287 6254 - lncRNA gene predicted gene, 29686
Cpgi8314 16 52031157 to 52032353 1196 CpG island CpG island 8314
Cblb 16 52031230 to 52208047 176817 + protein coding gene Casitas B-lineage lymphoma b
Tssr138763 16 52031324 to 52031342 18 + TSS region transcription start site region 138763
Tssr138764 16 52031555 to 52031570 15 + TSS region transcription start site region 138764
Tssr138765 16 52031585 to 52031646 61 + TSS region transcription start site region 138765
Tssr138766 16 52032071 to 52032126 55 + TSS region transcription start site region 138766
Tssr138767 16 52032557 to 52032572 15 + TSS region transcription start site region 138767
Tssr138768 16 52033931 to 52033937 6 + TSS region transcription start site region 138768
Tssr138769 16 52049651 to 52049662 11 + TSS region transcription start site region 138769
Tssr138770 16 52049681 to 52049689 8 + TSS region transcription start site region 138770