Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 16:4910270-6860311

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167 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Mgrn1 16 4886249 to 4938296 52047 + protein coding gene mahogunin, ring finger 1
Tssr136889 16 4913182 to 4913215 33 + TSS region transcription start site region 136889
Tssr136890 16 4927731 to 4927756 25 + TSS region transcription start site region 136890
Gm16861 16 4935164 to 4939585 4421 - antisense lncRNA gene predicted gene, 16861
Cpgi7924 16 4938967 to 4939696 729 CpG island CpG island 7924
Tssr136891 16 4939099 to 4939142 43 + TSS region transcription start site region 136891
Nudt16l1 16 4939111 to 4941028 1917 + protein coding gene nudix (nucleoside diphosphate linked moiety X)-type motif 16-like 1
Tssr139816 16 4939579 to 4939603 24 - TSS region transcription start site region 139816
Tssr139817 16 4939607 to 4939624 17 - TSS region transcription start site region 139817
Anks3 16 4941436 to 4964205 22769 - protein coding gene ankyrin repeat and sterile alpha motif domain containing 3
Gm36681 16 4951196 to 4955444 4248 + lncRNA gene predicted gene, 36681
Cpgi7925 16 4963829 to 4964845 1016 CpG island CpG island 7925
Tssr4780 16 4964012 to 4964017 5 - TSS region transcription start site region 4780
Tssr139818 16 4964168 to 4964220 52 - TSS region transcription start site region 139818
Tssr136892 16 4964250 to 4964272 22 + TSS region transcription start site region 136892
4930451G09Rik 16 4964289 to 4978962 14673 + protein coding gene RIKEN cDNA 4930451G09 gene
Tssr136893 16 4964564 to 4964605 41 + TSS region transcription start site region 136893
Sept12 16 4986858 to 4997852 10994 - protein coding gene septin 12
Tssr136894 16 4987449 to 4987465 16 + TSS region transcription start site region 136894
Tssr139819 16 4997782 to 4997831 49 - TSS region transcription start site region 139819
Tssr136895 16 5007283 to 5007293 10 + TSS region transcription start site region 136895
Smim22 16 5007288 to 5008309 1021 + protein coding gene small integral membrane protein 22
Tssr136896 16 5007306 to 5007341 35 + TSS region transcription start site region 136896
Tssr136897 16 5007363 to 5007376 13 + TSS region transcription start site region 136897
Tssr136898 16 5007534 to 5007550 16 + TSS region transcription start site region 136898
Tssr136899 16 5007563 to 5007593 30 + TSS region transcription start site region 136899
Tssr136900 16 5007659 to 5007693 34 + TSS region transcription start site region 136900
Gm42477 16 5008370 to 5013418 5048 + antisense lncRNA gene predicted gene 42477
Rogdi 16 5008730 to 5013553 4823 - protein coding gene rogdi homolog
Tssr139820 16 5009158 to 5009197 39 - TSS region transcription start site region 139820
Tssr139821 16 5010070 to 5010125 55 - TSS region transcription start site region 139821
Tssr139822 16 5010630 to 5010640 10 - TSS region transcription start site region 139822
Tssr139823 16 5010643 to 5010672 29 - TSS region transcription start site region 139823
Tssr139824 16 5011756 to 5011778 22 - TSS region transcription start site region 139824
Tssr139825 16 5012735 to 5012745 10 - TSS region transcription start site region 139825
Tssr139826 16 5012752 to 5012777 25 - TSS region transcription start site region 139826
Cpgi7926 16 5013026 to 5013831 805 CpG island CpG island 7926
Tssr139827 16 5013505 to 5013558 53 - TSS region transcription start site region 139827
Tssr139828 16 5013560 to 5013569 9 - TSS region transcription start site region 139828
Glyr1 16 5013909 to 5049863 35954 - protein coding gene glyoxylate reductase 1 homolog (Arabidopsis)
Tssr139829 16 5040544 to 5040548 4 - TSS region transcription start site region 139829
Cpgi7927 16 5049286 to 5051052 1766 CpG island CpG island 7927
Tssr4781 16 5049367 to 5049375 8 + TSS region transcription start site region 4781
Tssr139830 16 5049839 to 5049879 40 - TSS region transcription start site region 139830
Tssr139831 16 5049882 to 5049889 7 - TSS region transcription start site region 139831
Tssr136901 16 5050012 to 5050122 110 + TSS region transcription start site region 136901
Ubn1 16 5050057 to 5086289 36232 + protein coding gene ubinuclein 1
Tssr136902 16 5050199 to 5050210 11 + TSS region transcription start site region 136902
Tssr139832 16 5050781 to 5050795 14 - TSS region transcription start site region 139832
Gm23483 16 5060775 to 5060882 107 - snRNA gene predicted gene, 23483
Tssr136903 16 5080947 to 5080952 5 + TSS region transcription start site region 136903
Ppl 16 5086291 to 5132421 46130 - protein coding gene periplakin
Tssr139833 16 5089782 to 5089794 12 - TSS region transcription start site region 139833
Cpgi7928 16 5131622 to 5133098 1476 CpG island CpG island 7928
Tssr139834 16 5132458 to 5132483 25 - TSS region transcription start site region 139834
Tssr139835 16 5132488 to 5132513 25 - TSS region transcription start site region 139835
Tssr136904 16 5146941 to 5146959 18 + TSS region transcription start site region 136904
Tssr136905 16 5146960 to 5146981 21 + TSS region transcription start site region 136905
Tssr136906 16 5146985 to 5146996 11 + TSS region transcription start site region 136906
Sec14l5 16 5147109 to 5187271 40162 + protein coding gene SEC14-like lipid binding 5
D16Mit207 16 5193429 to 5193564 135 DNA segment DNA Segment, Chr 16, Massachusetts Institute of Technology-207
Nagpa 16 5195289 to 5204012 8723 - protein coding gene N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase
Tssr139836 16 5195597 to 5195622 25 - TSS region transcription start site region 139836
Tssr139837 16 5195935 to 5195949 14 - TSS region transcription start site region 139837
Tssr139838 16 5196491 to 5196493 2 - TSS region transcription start site region 139838
Cpgi7929 16 5203068 to 5204100 1032 CpG island CpG island 7929
Tssr139839 16 5203947 to 5203964 17 - TSS region transcription start site region 139839
Tssr139840 16 5203981 to 5204017 36 - TSS region transcription start site region 139840
AU021092 16 5211823 to 5222299 10476 - protein coding gene expressed sequence AU021092
Mir6364 16 5215789 to 5215874 85 - miRNA gene microRNA 6364
Tssr139841 16 5222257 to 5222299 42 - TSS region transcription start site region 139841
Gm23689 16 5223364 to 5223473 109 + miRNA gene predicted gene, 23689
Tssr139842 16 5227825 to 5227830 5 - TSS region transcription start site region 139842
Gm26095 16 5227920 to 5228029 109 + miRNA gene predicted gene, 26095
Cpgi7930 16 5233504 to 5234151 647 CpG island CpG island 7930
Tssr136907 16 5233615 to 5233653 38 + TSS region transcription start site region 136907
Alg1 16 5233621 to 5244909 11288 + protein coding gene asparagine-linked glycosylation 1 (beta-1,4-mannosyltransferase)
Eef2kmt 16 5244155 to 5255956 11801 - protein coding gene eukaryotic elongation factor 2 lysine methyltransferase
Gm15983 16 5254786 to 5289621 34835 + antisense lncRNA gene predicted gene 15983
Cpgi7931 16 5255411 to 5256591 1180 CpG island CpG island 7931
Tssr139843 16 5255923 to 5255965 42 - TSS region transcription start site region 139843
Tssr4782 16 5305323 to 5305327 4 + TSS region transcription start site region 4782
Cpgi7932 16 5306728 to 5307307 579 CpG island CpG island 7932
Gm41414 16 5306801 to 5450664 143863 + lincRNA gene predicted gene, 41414
Tssr136908 16 5306827 to 5306865 38 + TSS region transcription start site region 136908
n-R5s30 16 5324036 to 5324157 121 - rRNA gene nuclear encoded rRNA 5S 30
Tssr139844 16 5367859 to 5367868 9 - TSS region transcription start site region 139844
Tssr139845 16 5371254 to 5371264 10 - TSS region transcription start site region 139845
Tssr136909 16 5375082 to 5375095 13 + TSS region transcription start site region 136909
Tssr136910 16 5375097 to 5375106 9 + TSS region transcription start site region 136910
Tssr136911 16 5378142 to 5378153 11 + TSS region transcription start site region 136911
Tssr136912 16 5378155 to 5378170 15 + TSS region transcription start site region 136912
Tssr136913 16 5382381 to 5382388 7 + TSS region transcription start site region 136913
Tssr136914 16 5393694 to 5393708 14 + TSS region transcription start site region 136914
Tssr136915 16 5431388 to 5431417 29 + TSS region transcription start site region 136915
Tssr136916 16 5431475 to 5431486 11 + TSS region transcription start site region 136916
Tssr139846 16 5431773 to 5431813 40 - TSS region transcription start site region 139846
Tssr139847 16 5445867 to 5445877 10 - TSS region transcription start site region 139847
Cpgi7933 16 5473591 to 5473768 177 CpG island CpG island 7933
Tssr136917 16 5476342 to 5476346 4 + TSS region transcription start site region 136917
Gm41416 16 5483865 to 5484954 1089 + lncRNA gene predicted gene, 41416
Tssr4783 16 5608213 to 5608214 1 + TSS region transcription start site region 4783
D16Mit182 16 5682496 to 5682710 214 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 182
Loca2 16 5682496 to 5682710 214 QTL locomotor activity 2
Adip25 16 5702256 to 5702454 198 QTL adiposity 25
D16Mit107 16 5702256 to 5702454 198 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 107
D16Mit154 16 5706546 to 5706689 143 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 154
D16Mit79 16 5714609 to 5714745 136 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 79
D16Mit8 16 5736119 to 5736396 277 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 8
D16Mit130 16 5800196 to 5800337 141 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 130
Tssr136918 16 5855728 to 5855743 15 + TSS region transcription start site region 136918
Tssr136919 16 5855767 to 5855779 12 + TSS region transcription start site region 136919
Cpgi7934 16 5884702 to 5885890 1188 CpG island CpG island 7934
Tssr136920 16 5884921 to 5884962 41 + TSS region transcription start site region 136920
Tssr136921 16 5884969 to 5885048 79 + TSS region transcription start site region 136921
Tssr136922 16 5885270 to 5885311 41 + TSS region transcription start site region 136922
Rbfox1 16 5885355 to 7411526 1526171 + protein coding gene RNA binding protein, fox-1 homolog (C. elegans) 1
Tssr136923 16 5885453 to 5885509 56 + TSS region transcription start site region 136923
Tssr136924 16 5885579 to 5885592 13 + TSS region transcription start site region 136924
Tssr136925 16 5902157 to 5902201 44 + TSS region transcription start site region 136925
Tssr136926 16 5902593 to 5902595 2 + TSS region transcription start site region 136926
Gm36902 16 5946938 to 5950798 3860 - lncRNA gene predicted gene, 36902
Tssr139848 16 5949934 to 5949945 11 - TSS region transcription start site region 139848
Tssr139849 16 5949955 to 5949969 14 - TSS region transcription start site region 139849
1700123O21Rik 16 5975587 to 5998496 22909 + sense intronic lncRNA gene RIKEN cDNA 1700123O21 gene
D16Mit121 16 6001020 to 6001368 348 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 121
Tssr136927 16 6042362 to 6042371 9 + TSS region transcription start site region 136927
Tssr136928 16 6068493 to 6068509 16 + TSS region transcription start site region 136928
D16Mit54 16 6073356 to 6073559 203 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 54
D16Mit129 16 6079726 to 6079875 149 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 129
Tanidd3 16 6079726 to 6079875 149 QTL TallyHo associated non-insulin dependent diabetes mellitus 3
Gm36824 16 6083014 to 6107912 24898 - lncRNA gene predicted gene, 36824
Tssr139850 16 6106679 to 6106682 3 - TSS region transcription start site region 139850
D16Mit108 16 6248008 to 6248154 146 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 108
Tssr136929 16 6298890 to 6298922 32 + TSS region transcription start site region 136929
D16Mit181 16 6322467 to 6322575 108 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 181
Cpgi7935 16 6348452 to 6349290 838 CpG island CpG island 7935
Tssr136930 16 6348505 to 6348521 16 + TSS region transcription start site region 136930
Tssr136931 16 6348524 to 6348549 25 + TSS region transcription start site region 136931
Tssr136932 16 6348656 to 6348680 24 + TSS region transcription start site region 136932
Tssr136933 16 6348701 to 6348722 21 + TSS region transcription start site region 136933
Tssr136934 16 6348732 to 6348770 38 + TSS region transcription start site region 136934
Tssr136935 16 6349021 to 6349095 74 + TSS region transcription start site region 136935
Tssr4784 16 6349109 to 6349116 7 + TSS region transcription start site region 4784
Tssr136936 16 6349119 to 6349145 26 + TSS region transcription start site region 136936
Tssr136937 16 6349161 to 6349172 11 + TSS region transcription start site region 136937
Tssr136938 16 6460422 to 6460446 24 + TSS region transcription start site region 136938
Tssr136939 16 6503177 to 6503183 6 + TSS region transcription start site region 136939
Tssr136940 16 6517966 to 6517977 11 + TSS region transcription start site region 136940
D16Mit220 16 6518076 to 6518298 222 DNA segment DNA Segment, Chr 16, Massachusetts Institute of Technology 220
Tssr136941 16 6523577 to 6523587 10 + TSS region transcription start site region 136941
Tssr136942 16 6563113 to 6563127 14 + TSS region transcription start site region 136942
D16Mit9 16 6659145 to 6659287 142 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 9
Tssr136943 16 6680719 to 6680760 41 + TSS region transcription start site region 136943
Tssr136944 16 6698219 to 6698224 5 + TSS region transcription start site region 136944
D16Mit160 16 6725115 to 6725239 124 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 160
Tssr139851 16 6745482 to 6745495 13 - TSS region transcription start site region 139851
D16Mit80 16 6748145 to 6748276 131 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 80
Tssr136945 16 6816116 to 6816132 16 + TSS region transcription start site region 136945
Tssr136946 16 6824768 to 6824772 4 + TSS region transcription start site region 136946
D16Mit192 16 6832724 to 6832830 106 DNA segment DNA Segment, Chr 16, Massachusetts Institute of Technology 192
D16Mit192.2 16 6832843 to 6832974 131 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 192.2
Tssr136947 16 6840420 to 6840440 20 + TSS region transcription start site region 136947
Tssr139852 16 6842123 to 6842125 2 - TSS region transcription start site region 139852
Tssr136948 16 6842385 to 6842387 2 + TSS region transcription start site region 136948
Bbq1 16 35200846 to 6659145 -28541701 QTL brain and behavior QTL 1
Lp1 16 65669666 to 6725115 -58944551 QTL lymphocyte proliferation 1