Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 16:48457486-49799104

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141 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Morc1 16 48431237 to 48630900 199663 + protein coding gene microrchidia 1
Tssr138656 16 48479560 to 48479577 17 + TSS region transcription start site region 138656
Tssr141305 16 48589346 to 48589348 2 - TSS region transcription start site region 141305
Tssr138657 16 48594605 to 48594620 15 + TSS region transcription start site region 138657
Tssr138658 16 48594627 to 48594680 53 + TSS region transcription start site region 138658
Tssr138659 16 48598883 to 48598886 3 + TSS region transcription start site region 138659
Gm41458 16 48600118 to 48614343 14225 - lncRNA gene predicted gene, 41458
Tssr138660 16 48611656 to 48611671 15 + TSS region transcription start site region 138660
Tssr138661 16 48611685 to 48611720 35 + TSS region transcription start site region 138661
Tssr138662 16 48611725 to 48611741 16 + TSS region transcription start site region 138662
Tssr138663 16 48611782 to 48611785 3 + TSS region transcription start site region 138663
Tssr138664 16 48611788 to 48611808 20 + TSS region transcription start site region 138664
Tssr138665 16 48611809 to 48611820 11 + TSS region transcription start site region 138665
Tssr138666 16 48611844 to 48611853 9 + TSS region transcription start site region 138666
Tssr138667 16 48612160 to 48612206 46 + TSS region transcription start site region 138667
Tssr141306 16 48613838 to 48613865 27 - TSS region transcription start site region 141306
Tssr138668 16 48629918 to 48629922 4 + TSS region transcription start site region 138668
Tssr138669 16 48629988 to 48630011 23 + TSS region transcription start site region 138669
Tssr138670 16 48630154 to 48630166 12 + TSS region transcription start site region 138670
D16Mit62 16 48684711 to 48684860 149 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 62
D16Mit170 16 48684719 to 48684843 124 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 170
Trat1 16 48730774 to 48772021 41247 - protein coding gene T cell receptor associated transmembrane adaptor 1
Gm8670 16 48749400 to 48750448 1048 - pseudogene predicted gene 8670
Cpgi8304 16 48750186 to 48750506 320 CpG island CpG island 8304
Tssr4889 16 48771967 to 48771976 9 - TSS region transcription start site region 4889
Tssr141307 16 48772009 to 48772030 21 - TSS region transcription start site region 141307
Tssr141308 16 48772036 to 48772051 15 - TSS region transcription start site region 141308
Tssr141309 16 48772052 to 48772069 17 - TSS region transcription start site region 141309
Tssr141310 16 48772102 to 48772143 41 - TSS region transcription start site region 141310
Tssr141311 16 48772145 to 48772157 12 - TSS region transcription start site region 141311
Tssr141312 16 48786405 to 48786414 9 - TSS region transcription start site region 141312
Tssr138671 16 48786559 to 48786577 18 + TSS region transcription start site region 138671
Tssr138672 16 48786602 to 48786613 11 + TSS region transcription start site region 138672
Tssr138673 16 48786649 to 48786678 29 + TSS region transcription start site region 138673
Tssr138674 16 48790203 to 48790212 9 + TSS region transcription start site region 138674
Tssr138675 16 48790238 to 48790255 17 + TSS region transcription start site region 138675
Tssr138676 16 48790269 to 48790281 12 + TSS region transcription start site region 138676
Tssr138677 16 48790301 to 48790307 6 + TSS region transcription start site region 138677
Retnlb 16 48816856 to 48818892 2036 + protein coding gene resistin like beta
Tssr138678 16 48816961 to 48816976 15 + TSS region transcription start site region 138678
Tssr4890 16 48818659 to 48818666 7 - TSS region transcription start site region 4890
Tssr141313 16 48818718 to 48818733 15 - TSS region transcription start site region 141313
Tssr138679 16 48818875 to 48818898 23 + TSS region transcription start site region 138679
Tssr138680 16 48842477 to 48842487 10 + TSS region transcription start site region 138680
Tssr138681 16 48842531 to 48842580 49 + TSS region transcription start site region 138681
Retnla 16 48842552 to 48844461 1909 + protein coding gene resistin like alpha
Tssr138682 16 48842608 to 48842631 23 + TSS region transcription start site region 138682
Tssr138683 16 48842654 to 48842661 7 + TSS region transcription start site region 138683
Tssr138684 16 48842671 to 48842695 24 + TSS region transcription start site region 138684
Tssr138685 16 48842719 to 48842736 17 + TSS region transcription start site region 138685
Tssr138686 16 48842843 to 48842855 12 + TSS region transcription start site region 138686
Tssr138687 16 48842884 to 48842897 13 + TSS region transcription start site region 138687
Tssr138688 16 48843543 to 48843595 52 + TSS region transcription start site region 138688
Tssr138689 16 48844171 to 48844183 12 + TSS region transcription start site region 138689
Tssr138690 16 48844229 to 48844240 11 + TSS region transcription start site region 138690
Tssr138691 16 48844266 to 48844293 27 + TSS region transcription start site region 138691
Tssr138692 16 48870941 to 48870949 8 + TSS region transcription start site region 138692
Tssr138693 16 48870969 to 48870979 10 + TSS region transcription start site region 138693
Tssr141314 16 48871898 to 48871909 11 - TSS region transcription start site region 141314
Tssr138694 16 48871994 to 48872009 15 + TSS region transcription start site region 138694
Tssr138695 16 48872024 to 48872049 25 + TSS region transcription start site region 138695
Tssr138696 16 48872050 to 48872070 20 + TSS region transcription start site region 138696
Tssr4891 16 48872431 to 48872448 17 - TSS region transcription start site region 4891
Tssr141315 16 48872466 to 48872491 25 - TSS region transcription start site region 141315
Tssr138697 16 48872613 to 48872626 13 + TSS region transcription start site region 138697
Retnlg 16 48872621 to 48874496 1875 + protein coding gene resistin like gamma
Tssr138698 16 48872637 to 48872650 13 + TSS region transcription start site region 138698
Tssr138699 16 48872678 to 48872688 10 + TSS region transcription start site region 138699
Tssr138700 16 48872697 to 48872800 103 + TSS region transcription start site region 138700
Tssr138701 16 48872818 to 48872825 7 + TSS region transcription start site region 138701
Tssr138702 16 48872839 to 48872846 7 + TSS region transcription start site region 138702
Tssr138703 16 48872855 to 48872865 10 + TSS region transcription start site region 138703
Tssr138704 16 48872950 to 48872961 11 + TSS region transcription start site region 138704
Tssr141316 16 48872968 to 48872996 28 - TSS region transcription start site region 141316
Tssr4892 16 48873089 to 48873103 14 + TSS region transcription start site region 4892
Tssr138705 16 48873309 to 48873343 34 + TSS region transcription start site region 138705
Tssr138706 16 48873623 to 48873638 15 + TSS region transcription start site region 138706
Tssr4893 16 48874071 to 48874078 7 + TSS region transcription start site region 4893
Tssr4894 16 48874320 to 48874327 7 + TSS region transcription start site region 4894
Tssr4895 16 48874353 to 48874376 23 - TSS region transcription start site region 4895
Tssr4896 16 48874378 to 48874411 33 - TSS region transcription start site region 4896
Tssr141317 16 48874490 to 48874496 6 - TSS region transcription start site region 141317
Dzip3 16 48924228 to 48994153 69925 - protein coding gene DAZ interacting protein 3, zinc finger
Gm22576 16 48942999 to 48943102 103 - snRNA gene predicted gene, 22576
Cpgi8305 16 48993495 to 48994569 1074 CpG island CpG island 8305
Tssr141318 16 48993931 to 48993949 18 - TSS region transcription start site region 141318
Tssr141319 16 48994081 to 48994123 42 - TSS region transcription start site region 141319
Cip2a 16 48994188 to 49019705 25517 + protein coding gene cell proliferation regulating inhibitor of protein phosphatase 2A
Tssr138707 16 48994197 to 48994239 42 + TSS region transcription start site region 138707
Tssr138708 16 49057399 to 49057413 14 + TSS region transcription start site region 138708
Myh15 16 49057486 to 49199104 141618 + protein coding gene myosin, heavy chain 15
Tssr138709 16 49078886 to 49078894 8 + TSS region transcription start site region 138709
1700026J12Rik 16 49210641 to 49255772 45131 - lincRNA gene RIKEN cDNA 1700026J12 gene
Tssr141320 16 49255748 to 49255778 30 - TSS region transcription start site region 141320
Tssr141321 16 49255779 to 49255786 7 - TSS region transcription start site region 141321
Tssr141322 16 49255788 to 49255795 7 - TSS region transcription start site region 141322
Gm5407 16 49296651 to 49297898 1247 - pseudogene predicted gene 5407
D16Mit85 16 49344643 to 49344768 125 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 85
D16Ium61 16 49362747 to 49362937 190 DNA segment DNA segment, Chr 16, Indiana University Medical 61
Gm18694 16 49369052 to 49370277 1225 + pseudogene predicted gene, 18694
D16Mit91 16 49398727 to 49398872 145 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 91
Gm4802 16 49412261 to 49412630 369 - protein coding gene predicted gene 4802
Gm6931 16 49424806 to 49425814 1008 + pseudogene predicted gene 6931
Cypr1 16 49492432 to 49492570 138 QTL cytokine production 1
D16Mit15 16 49492432 to 49492570 138 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 15
Gm35938 16 49562934 to 49568000 5066 - protein coding gene predicted gene, 35938
Gm31494 16 49572319 to 49644652 72333 - lncRNA gene predicted gene, 31494
D16Mit42 16 49620462 to 49620585 123 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 42
D16Mit196 16 49662817 to 49662939 122 DNA segment DNA Segment, Chr 16, Massachusetts Institute of Technology 196
Cpgi8306 16 49698950 to 49699649 699 CpG island CpG island 8306
Tssr141323 16 49699007 to 49699022 15 - TSS region transcription start site region 141323
Tssr138710 16 49699198 to 49699299 101 + TSS region transcription start site region 138710
Ift57 16 49699294 to 49765126 65832 + protein coding gene intraflagellar transport 57
Tssr138711 16 49739223 to 49739226 3 + TSS region transcription start site region 138711
Tssr138712 16 49757364 to 49757369 5 + TSS region transcription start site region 138712
Gm15518 16 49759703 to 49775922 16219 - antisense lncRNA gene predicted gene 15518
Tssr141324 16 49768695 to 49768709 14 - TSS region transcription start site region 141324
Tssr141325 16 49768727 to 49768738 11 - TSS region transcription start site region 141325
Tssr141326 16 49768751 to 49768779 28 - TSS region transcription start site region 141326
Tssr141327 16 49768791 to 49768802 11 - TSS region transcription start site region 141327
Tssr141328 16 49769794 to 49769822 28 - TSS region transcription start site region 141328
Tssr138713 16 49770612 to 49770623 11 + TSS region transcription start site region 138713
Tssr141329 16 49770790 to 49770803 13 - TSS region transcription start site region 141329
Tssr141330 16 49770805 to 49770817 12 - TSS region transcription start site region 141330
Tssr141331 16 49770818 to 49770836 18 - TSS region transcription start site region 141331
Tssr141332 16 49770846 to 49770863 17 - TSS region transcription start site region 141332
Tssr141333 16 49771681 to 49771694 13 - TSS region transcription start site region 141333
Tssr141334 16 49771836 to 49771848 12 - TSS region transcription start site region 141334
Tssr141335 16 49772770 to 49772785 15 - TSS region transcription start site region 141335
Tssr138714 16 49772826 to 49772840 14 + TSS region transcription start site region 138714
Tssr4897 16 49775236 to 49775240 4 + TSS region transcription start site region 4897
D16Mit63 16 49777226 to 49777427 201 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 63
Tssr138715 16 49781808 to 49781827 19 + TSS region transcription start site region 138715
Tssr138716 16 49782030 to 49782045 15 + TSS region transcription start site region 138716
Tssr141336 16 49783439 to 49783446 7 - TSS region transcription start site region 141336
Tssr141337 16 49790951 to 49790973 22 - TSS region transcription start site region 141337
Tssr138717 16 49791159 to 49791169 10 + TSS region transcription start site region 138717
Tssr138718 16 49791171 to 49791185 14 + TSS region transcription start site region 138718
Tssr141338 16 49792515 to 49792528 13 - TSS region transcription start site region 141338
Tssr4898 16 49792597 to 49792615 18 - TSS region transcription start site region 4898
Tssr141339 16 49792780 to 49792784 4 - TSS region transcription start site region 141339