Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 16:47959918-49299922

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122 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm7275 16 48072997 to 48074182 1185 + pseudogene predicted gene 7275
Gm17804 16 48104461 to 48105619 1158 + pseudogene predicted gene, 17804
6430553K19Rik 16 48131142 to 48158499 27357 - lincRNA gene RIKEN cDNA 6430553K19 gene
Tssr138646 16 48218529 to 48218531 2 + TSS region transcription start site region 138646
Tssr164732 16 48218568 to 48218573 5 + TSS region transcription start site region 164732
Gm7204 16 48218605 to 48219201 596 + pseudogene predicted pseudogene 7204
Tssr138647 16 48219072 to 48219110 38 + TSS region transcription start site region 138647
Gm49770 16 48261814 to 48262774 960 + pseudogene predicted gene, 49770
Tssr138648 16 48281653 to 48281665 12 + TSS region transcription start site region 138648
Dppa4 16 48283733 to 48294237 10504 + protein coding gene developmental pluripotency associated 4
Tssr138649 16 48289028 to 48289032 4 + TSS region transcription start site region 138649
Tssr138650 16 48303863 to 48303896 33 + TSS region transcription start site region 138650
Tssr138651 16 48303914 to 48303925 11 + TSS region transcription start site region 138651
Tssr138652 16 48310165 to 48310188 23 + TSS region transcription start site region 138652
Dppa2 16 48310274 to 48319513 9239 + protein coding gene developmental pluripotency associated 2
Tssr138653 16 48310427 to 48310466 39 + TSS region transcription start site region 138653
D16Mit61 16 48330176 to 48330322 146 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 61
Gm49771 16 48368642 to 48368752 110 + pseudogene predicted gene, 49771
Gm5485 16 48399453 to 48412416 12963 - lncRNA gene predicted gene 5485
Tssr141303 16 48410120 to 48410150 30 - TSS region transcription start site region 141303
n-R5s36 16 48410306 to 48410424 118 - rRNA gene nuclear encoded rRNA 5S 36
Tssr141304 16 48412408 to 48412421 13 - TSS region transcription start site region 141304
Cpgi8303 16 48431118 to 48431390 272 CpG island CpG island 8303
Morc1 16 48431237 to 48630900 199663 + protein coding gene microrchidia 1
Tssr138654 16 48431281 to 48431323 42 + TSS region transcription start site region 138654
Tssr138655 16 48431330 to 48431339 9 + TSS region transcription start site region 138655
Tssr138656 16 48479560 to 48479577 17 + TSS region transcription start site region 138656
Tssr141305 16 48589346 to 48589348 2 - TSS region transcription start site region 141305
Tssr138657 16 48594605 to 48594620 15 + TSS region transcription start site region 138657
Tssr138658 16 48594627 to 48594680 53 + TSS region transcription start site region 138658
Tssr138659 16 48598883 to 48598886 3 + TSS region transcription start site region 138659
Gm41458 16 48600118 to 48614343 14225 - lncRNA gene predicted gene, 41458
Tssr138660 16 48611656 to 48611671 15 + TSS region transcription start site region 138660
Tssr138661 16 48611685 to 48611720 35 + TSS region transcription start site region 138661
Tssr138662 16 48611725 to 48611741 16 + TSS region transcription start site region 138662
Tssr138663 16 48611782 to 48611785 3 + TSS region transcription start site region 138663
Tssr138664 16 48611788 to 48611808 20 + TSS region transcription start site region 138664
Tssr138665 16 48611809 to 48611820 11 + TSS region transcription start site region 138665
Tssr138666 16 48611844 to 48611853 9 + TSS region transcription start site region 138666
Tssr138667 16 48612160 to 48612206 46 + TSS region transcription start site region 138667
Tssr141306 16 48613838 to 48613865 27 - TSS region transcription start site region 141306
Tssr138668 16 48629918 to 48629922 4 + TSS region transcription start site region 138668
Tssr138669 16 48629988 to 48630011 23 + TSS region transcription start site region 138669
Tssr138670 16 48630154 to 48630166 12 + TSS region transcription start site region 138670
D16Mit62 16 48684711 to 48684860 149 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 62
D16Mit170 16 48684719 to 48684843 124 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 170
Trat1 16 48730774 to 48772021 41247 - protein coding gene T cell receptor associated transmembrane adaptor 1
Gm8670 16 48749400 to 48750448 1048 - pseudogene predicted gene 8670
Cpgi8304 16 48750186 to 48750506 320 CpG island CpG island 8304
Tssr4889 16 48771967 to 48771976 9 - TSS region transcription start site region 4889
Tssr141307 16 48772009 to 48772030 21 - TSS region transcription start site region 141307
Tssr141308 16 48772036 to 48772051 15 - TSS region transcription start site region 141308
Tssr141309 16 48772052 to 48772069 17 - TSS region transcription start site region 141309
Tssr141310 16 48772102 to 48772143 41 - TSS region transcription start site region 141310
Tssr141311 16 48772145 to 48772157 12 - TSS region transcription start site region 141311
Tssr141312 16 48786405 to 48786414 9 - TSS region transcription start site region 141312
Tssr138671 16 48786559 to 48786577 18 + TSS region transcription start site region 138671
Tssr138672 16 48786602 to 48786613 11 + TSS region transcription start site region 138672
Tssr138673 16 48786649 to 48786678 29 + TSS region transcription start site region 138673
Tssr138674 16 48790203 to 48790212 9 + TSS region transcription start site region 138674
Tssr138675 16 48790238 to 48790255 17 + TSS region transcription start site region 138675
Tssr138676 16 48790269 to 48790281 12 + TSS region transcription start site region 138676
Tssr138677 16 48790301 to 48790307 6 + TSS region transcription start site region 138677
Retnlb 16 48816856 to 48818892 2036 + protein coding gene resistin like beta
Tssr138678 16 48816961 to 48816976 15 + TSS region transcription start site region 138678
Tssr4890 16 48818659 to 48818666 7 - TSS region transcription start site region 4890
Tssr141313 16 48818718 to 48818733 15 - TSS region transcription start site region 141313
Tssr138679 16 48818875 to 48818898 23 + TSS region transcription start site region 138679
Tssr138680 16 48842477 to 48842487 10 + TSS region transcription start site region 138680
Tssr138681 16 48842531 to 48842580 49 + TSS region transcription start site region 138681
Retnla 16 48842552 to 48844461 1909 + protein coding gene resistin like alpha
Tssr138682 16 48842608 to 48842631 23 + TSS region transcription start site region 138682
Tssr138683 16 48842654 to 48842661 7 + TSS region transcription start site region 138683
Tssr138684 16 48842671 to 48842695 24 + TSS region transcription start site region 138684
Tssr138685 16 48842719 to 48842736 17 + TSS region transcription start site region 138685
Tssr138686 16 48842843 to 48842855 12 + TSS region transcription start site region 138686
Tssr138687 16 48842884 to 48842897 13 + TSS region transcription start site region 138687
Tssr138688 16 48843543 to 48843595 52 + TSS region transcription start site region 138688
Tssr138689 16 48844171 to 48844183 12 + TSS region transcription start site region 138689
Tssr138690 16 48844229 to 48844240 11 + TSS region transcription start site region 138690
Tssr138691 16 48844266 to 48844293 27 + TSS region transcription start site region 138691
Tssr138692 16 48870941 to 48870949 8 + TSS region transcription start site region 138692
Tssr138693 16 48870969 to 48870979 10 + TSS region transcription start site region 138693
Tssr141314 16 48871898 to 48871909 11 - TSS region transcription start site region 141314
Tssr138694 16 48871994 to 48872009 15 + TSS region transcription start site region 138694
Tssr138695 16 48872024 to 48872049 25 + TSS region transcription start site region 138695
Tssr138696 16 48872050 to 48872070 20 + TSS region transcription start site region 138696
Tssr4891 16 48872431 to 48872448 17 - TSS region transcription start site region 4891
Tssr141315 16 48872466 to 48872491 25 - TSS region transcription start site region 141315
Tssr138697 16 48872613 to 48872626 13 + TSS region transcription start site region 138697
Retnlg 16 48872621 to 48874496 1875 + protein coding gene resistin like gamma
Tssr138698 16 48872637 to 48872650 13 + TSS region transcription start site region 138698
Tssr138699 16 48872678 to 48872688 10 + TSS region transcription start site region 138699
Tssr138700 16 48872697 to 48872800 103 + TSS region transcription start site region 138700
Tssr138701 16 48872818 to 48872825 7 + TSS region transcription start site region 138701
Tssr138702 16 48872839 to 48872846 7 + TSS region transcription start site region 138702
Tssr138703 16 48872855 to 48872865 10 + TSS region transcription start site region 138703
Tssr138704 16 48872950 to 48872961 11 + TSS region transcription start site region 138704
Tssr141316 16 48872968 to 48872996 28 - TSS region transcription start site region 141316
Tssr4892 16 48873089 to 48873103 14 + TSS region transcription start site region 4892
Tssr138705 16 48873309 to 48873343 34 + TSS region transcription start site region 138705
Tssr138706 16 48873623 to 48873638 15 + TSS region transcription start site region 138706
Tssr4893 16 48874071 to 48874078 7 + TSS region transcription start site region 4893
Tssr4894 16 48874320 to 48874327 7 + TSS region transcription start site region 4894
Tssr4895 16 48874353 to 48874376 23 - TSS region transcription start site region 4895
Tssr4896 16 48874378 to 48874411 33 - TSS region transcription start site region 4896
Tssr141317 16 48874490 to 48874496 6 - TSS region transcription start site region 141317
Dzip3 16 48924228 to 48994153 69925 - protein coding gene DAZ interacting protein 3, zinc finger
Gm22576 16 48942999 to 48943102 103 - snRNA gene predicted gene, 22576
Cpgi8305 16 48993495 to 48994569 1074 CpG island CpG island 8305
Tssr141318 16 48993931 to 48993949 18 - TSS region transcription start site region 141318
Tssr141319 16 48994081 to 48994123 42 - TSS region transcription start site region 141319
Cip2a 16 48994188 to 49019705 25517 + protein coding gene cell proliferation regulating inhibitor of protein phosphatase 2A
Tssr138707 16 48994197 to 48994239 42 + TSS region transcription start site region 138707
Tssr138708 16 49057399 to 49057413 14 + TSS region transcription start site region 138708
Myh15 16 49057486 to 49199104 141618 + protein coding gene myosin, heavy chain 15
Tssr138709 16 49078886 to 49078894 8 + TSS region transcription start site region 138709
1700026J12Rik 16 49210641 to 49255772 45131 - lincRNA gene RIKEN cDNA 1700026J12 gene
Tssr141320 16 49255748 to 49255778 30 - TSS region transcription start site region 141320
Tssr141321 16 49255779 to 49255786 7 - TSS region transcription start site region 141321
Tssr141322 16 49255788 to 49255795 7 - TSS region transcription start site region 141322
Gm5407 16 49296651 to 49297898 1247 - pseudogene predicted gene 5407