Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 16:47828914-48778925

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57 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
D16Mit45 16 47869322 to 47869434 112 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 45
D16Mit214 16 47877473 to 47877624 151 DNA segment DNA Segment, Chr 16 Massachusetts Institute of Technology 214
Gm7275 16 48072997 to 48074182 1185 + pseudogene predicted gene 7275
Gm17804 16 48104461 to 48105619 1158 + pseudogene predicted gene, 17804
6430553K19Rik 16 48131142 to 48158499 27357 - lincRNA gene RIKEN cDNA 6430553K19 gene
Tssr138646 16 48218529 to 48218531 2 + TSS region transcription start site region 138646
Tssr164732 16 48218568 to 48218573 5 + TSS region transcription start site region 164732
Gm7204 16 48218605 to 48219201 596 + pseudogene predicted pseudogene 7204
Tssr138647 16 48219072 to 48219110 38 + TSS region transcription start site region 138647
Gm49770 16 48261814 to 48262774 960 + pseudogene predicted gene, 49770
Tssr138648 16 48281653 to 48281665 12 + TSS region transcription start site region 138648
Dppa4 16 48283733 to 48294237 10504 + protein coding gene developmental pluripotency associated 4
Tssr138649 16 48289028 to 48289032 4 + TSS region transcription start site region 138649
Tssr138650 16 48303863 to 48303896 33 + TSS region transcription start site region 138650
Tssr138651 16 48303914 to 48303925 11 + TSS region transcription start site region 138651
Tssr138652 16 48310165 to 48310188 23 + TSS region transcription start site region 138652
Dppa2 16 48310274 to 48319513 9239 + protein coding gene developmental pluripotency associated 2
Tssr138653 16 48310427 to 48310466 39 + TSS region transcription start site region 138653
D16Mit61 16 48330176 to 48330322 146 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 61
Gm49771 16 48368642 to 48368752 110 + pseudogene predicted gene, 49771
Gm5485 16 48399453 to 48412416 12963 - lncRNA gene predicted gene 5485
Tssr141303 16 48410120 to 48410150 30 - TSS region transcription start site region 141303
n-R5s36 16 48410306 to 48410424 118 - rRNA gene nuclear encoded rRNA 5S 36
Tssr141304 16 48412408 to 48412421 13 - TSS region transcription start site region 141304
Cpgi8303 16 48431118 to 48431390 272 CpG island CpG island 8303
Morc1 16 48431237 to 48630900 199663 + protein coding gene microrchidia 1
Tssr138654 16 48431281 to 48431323 42 + TSS region transcription start site region 138654
Tssr138655 16 48431330 to 48431339 9 + TSS region transcription start site region 138655
Tssr138656 16 48479560 to 48479577 17 + TSS region transcription start site region 138656
Tssr141305 16 48589346 to 48589348 2 - TSS region transcription start site region 141305
Tssr138657 16 48594605 to 48594620 15 + TSS region transcription start site region 138657
Tssr138658 16 48594627 to 48594680 53 + TSS region transcription start site region 138658
Tssr138659 16 48598883 to 48598886 3 + TSS region transcription start site region 138659
Gm41458 16 48600118 to 48614343 14225 - lncRNA gene predicted gene, 41458
Tssr138660 16 48611656 to 48611671 15 + TSS region transcription start site region 138660
Tssr138661 16 48611685 to 48611720 35 + TSS region transcription start site region 138661
Tssr138662 16 48611725 to 48611741 16 + TSS region transcription start site region 138662
Tssr138663 16 48611782 to 48611785 3 + TSS region transcription start site region 138663
Tssr138664 16 48611788 to 48611808 20 + TSS region transcription start site region 138664
Tssr138665 16 48611809 to 48611820 11 + TSS region transcription start site region 138665
Tssr138666 16 48611844 to 48611853 9 + TSS region transcription start site region 138666
Tssr138667 16 48612160 to 48612206 46 + TSS region transcription start site region 138667
Tssr141306 16 48613838 to 48613865 27 - TSS region transcription start site region 141306
Tssr138668 16 48629918 to 48629922 4 + TSS region transcription start site region 138668
Tssr138669 16 48629988 to 48630011 23 + TSS region transcription start site region 138669
Tssr138670 16 48630154 to 48630166 12 + TSS region transcription start site region 138670
D16Mit62 16 48684711 to 48684860 149 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 62
D16Mit170 16 48684719 to 48684843 124 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 170
Trat1 16 48730774 to 48772021 41247 - protein coding gene T cell receptor associated transmembrane adaptor 1
Gm8670 16 48749400 to 48750448 1048 - pseudogene predicted gene 8670
Cpgi8304 16 48750186 to 48750506 320 CpG island CpG island 8304
Tssr4889 16 48771967 to 48771976 9 - TSS region transcription start site region 4889
Tssr141307 16 48772009 to 48772030 21 - TSS region transcription start site region 141307
Tssr141308 16 48772036 to 48772051 15 - TSS region transcription start site region 141308
Tssr141309 16 48772052 to 48772069 17 - TSS region transcription start site region 141309
Tssr141310 16 48772102 to 48772143 41 - TSS region transcription start site region 141310
Tssr141311 16 48772145 to 48772157 12 - TSS region transcription start site region 141311