Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 16:4704289-5238962

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140 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Dnaja3 16 4684070 to 4707695 23625 + protein coding gene DnaJ heat shock protein family (Hsp40) member A3
Tssr136868 16 4707125 to 4707130 5 + TSS region transcription start site region 136868
Nmral1 16 4711317 to 4719356 8039 - protein coding gene NmrA-like family domain containing 1
Tssr139788 16 4719043 to 4719054 11 - TSS region transcription start site region 139788
Tssr139789 16 4719078 to 4719126 48 - TSS region transcription start site region 139789
Tssr139790 16 4719128 to 4719146 18 - TSS region transcription start site region 139790
Tssr139791 16 4719148 to 4719164 16 - TSS region transcription start site region 139791
Cpgi7919 16 4726099 to 4727282 1183 CpG island CpG island 7919
Tssr136869 16 4726284 to 4726290 6 + TSS region transcription start site region 136869
Tssr136870 16 4726357 to 4726370 13 + TSS region transcription start site region 136870
Hmox2 16 4726361 to 4766741 40380 + protein coding gene heme oxygenase 2
Tssr136871 16 4726374 to 4726439 65 + TSS region transcription start site region 136871
Gm15859 16 4729869 to 4730809 940 + antisense lncRNA gene predicted gene 15859
Tssr136872 16 4731215 to 4731217 2 + TSS region transcription start site region 136872
Tssr136873 16 4734972 to 4734976 4 + TSS region transcription start site region 136873
Tssr136874 16 4738722 to 4738723 1 + TSS region transcription start site region 136874
Tssr136875 16 4741543 to 4741592 49 + TSS region transcription start site region 136875
Tssr136876 16 4741594 to 4741630 36 + TSS region transcription start site region 136876
Tssr136877 16 4756879 to 4756881 2 + TSS region transcription start site region 136877
Cpgi7920 16 4756915 to 4757115 200 CpG island CpG island 7920
Tssr136878 16 4762616 to 4762631 15 + TSS region transcription start site region 136878
Cdip1 16 4765461 to 4790287 24826 - protein coding gene cell death inducing Trp53 target 1
Tssr139792 16 4769673 to 4769691 18 - TSS region transcription start site region 139792
Tssr139793 16 4769723 to 4769742 19 - TSS region transcription start site region 139793
Gm15835 16 4777743 to 4779454 1711 + lincRNA gene predicted gene 15835
Cpgi7921 16 4789315 to 4790510 1195 CpG island CpG island 7921
Tssr139794 16 4789865 to 4789885 20 - TSS region transcription start site region 139794
Tssr139795 16 4789887 to 4789949 62 - TSS region transcription start site region 139795
Tssr139796 16 4789984 to 4789995 11 - TSS region transcription start site region 139796
Tssr139797 16 4790000 to 4790009 9 - TSS region transcription start site region 139797
Tssr139798 16 4790187 to 4790203 16 - TSS region transcription start site region 139798
Tssr139799 16 4790205 to 4790216 11 - TSS region transcription start site region 139799
Tssr139800 16 4790220 to 4790300 80 - TSS region transcription start site region 139800
Tssr139801 16 4829283 to 4829319 36 - TSS region transcription start site region 139801
Tssr136879 16 4835406 to 4835422 16 + TSS region transcription start site region 136879
4930562C15Rik 16 4835416 to 4867686 32270 + protein coding gene RIKEN cDNA 4930562C15 gene
Tssr136880 16 4835432 to 4835457 25 + TSS region transcription start site region 136880
Gm10914 16 4869216 to 4870624 1408 - unclassified gene predicted gene 10914
Tssr139802 16 4870690 to 4870697 7 - TSS region transcription start site region 139802
Ubald1 16 4874779 to 4879851 5072 - protein coding gene UBA-like domain containing 1
Tssr139803 16 4875735 to 4875753 18 - TSS region transcription start site region 139803
Tssr139804 16 4875828 to 4875846 18 - TSS region transcription start site region 139804
Tssr139805 16 4878310 to 4878313 3 - TSS region transcription start site region 139805
Tssr139806 16 4878334 to 4878352 18 - TSS region transcription start site region 139806
Cpgi7922 16 4879006 to 4881106 2100 CpG island CpG island 7922
Tssr139807 16 4879042 to 4879053 11 - TSS region transcription start site region 139807
Tssr139808 16 4879789 to 4879803 14 - TSS region transcription start site region 139808
Tssr139809 16 4879810 to 4879836 26 - TSS region transcription start site region 139809
Tssr139810 16 4879849 to 4879864 15 - TSS region transcription start site region 139810
Tssr139811 16 4879872 to 4879892 20 - TSS region transcription start site region 139811
Tssr139812 16 4880160 to 4880178 18 - TSS region transcription start site region 139812
Tssr139813 16 4880264 to 4880275 11 - TSS region transcription start site region 139813
Tssr139814 16 4880284 to 4880302 18 - TSS region transcription start site region 139814
Tssr139815 16 4880447 to 4880479 32 - TSS region transcription start site region 139815
Tssr136881 16 4880674 to 4880710 36 + TSS region transcription start site region 136881
Cpgi7923 16 4885869 to 4886943 1074 CpG island CpG island 7923
Tssr136882 16 4886135 to 4886150 15 + TSS region transcription start site region 136882
Tssr136883 16 4886200 to 4886205 5 + TSS region transcription start site region 136883
Tssr136884 16 4886208 to 4886219 11 + TSS region transcription start site region 136884
Tssr136885 16 4886239 to 4886268 29 + TSS region transcription start site region 136885
Mgrn1 16 4886249 to 4938296 52047 + protein coding gene mahogunin, ring finger 1
Tssr136886 16 4886271 to 4886284 13 + TSS region transcription start site region 136886
Tssr136887 16 4886302 to 4886320 18 + TSS region transcription start site region 136887
Tssr136888 16 4908709 to 4908712 3 + TSS region transcription start site region 136888
Tssr136889 16 4913182 to 4913215 33 + TSS region transcription start site region 136889
Tssr136890 16 4927731 to 4927756 25 + TSS region transcription start site region 136890
Gm16861 16 4935164 to 4939585 4421 - antisense lncRNA gene predicted gene, 16861
Cpgi7924 16 4938967 to 4939696 729 CpG island CpG island 7924
Tssr136891 16 4939099 to 4939142 43 + TSS region transcription start site region 136891
Nudt16l1 16 4939111 to 4941028 1917 + protein coding gene nudix (nucleoside diphosphate linked moiety X)-type motif 16-like 1
Tssr139816 16 4939579 to 4939603 24 - TSS region transcription start site region 139816
Tssr139817 16 4939607 to 4939624 17 - TSS region transcription start site region 139817
Anks3 16 4941436 to 4964205 22769 - protein coding gene ankyrin repeat and sterile alpha motif domain containing 3
Gm36681 16 4951196 to 4955444 4248 + lncRNA gene predicted gene, 36681
Cpgi7925 16 4963829 to 4964845 1016 CpG island CpG island 7925
Tssr4780 16 4964012 to 4964017 5 - TSS region transcription start site region 4780
Tssr139818 16 4964168 to 4964220 52 - TSS region transcription start site region 139818
Tssr136892 16 4964250 to 4964272 22 + TSS region transcription start site region 136892
4930451G09Rik 16 4964289 to 4978962 14673 + protein coding gene RIKEN cDNA 4930451G09 gene
Tssr136893 16 4964564 to 4964605 41 + TSS region transcription start site region 136893
Sept12 16 4986858 to 4997852 10994 - protein coding gene septin 12
Tssr136894 16 4987449 to 4987465 16 + TSS region transcription start site region 136894
Tssr139819 16 4997782 to 4997831 49 - TSS region transcription start site region 139819
Tssr136895 16 5007283 to 5007293 10 + TSS region transcription start site region 136895
Smim22 16 5007288 to 5008309 1021 + protein coding gene small integral membrane protein 22
Tssr136896 16 5007306 to 5007341 35 + TSS region transcription start site region 136896
Tssr136897 16 5007363 to 5007376 13 + TSS region transcription start site region 136897
Tssr136898 16 5007534 to 5007550 16 + TSS region transcription start site region 136898
Tssr136899 16 5007563 to 5007593 30 + TSS region transcription start site region 136899
Tssr136900 16 5007659 to 5007693 34 + TSS region transcription start site region 136900
Gm42477 16 5008370 to 5013418 5048 + antisense lncRNA gene predicted gene 42477
Rogdi 16 5008730 to 5013553 4823 - protein coding gene rogdi homolog
Tssr139820 16 5009158 to 5009197 39 - TSS region transcription start site region 139820
Tssr139821 16 5010070 to 5010125 55 - TSS region transcription start site region 139821
Tssr139822 16 5010630 to 5010640 10 - TSS region transcription start site region 139822
Tssr139823 16 5010643 to 5010672 29 - TSS region transcription start site region 139823
Tssr139824 16 5011756 to 5011778 22 - TSS region transcription start site region 139824
Tssr139825 16 5012735 to 5012745 10 - TSS region transcription start site region 139825
Tssr139826 16 5012752 to 5012777 25 - TSS region transcription start site region 139826
Cpgi7926 16 5013026 to 5013831 805 CpG island CpG island 7926
Tssr139827 16 5013505 to 5013558 53 - TSS region transcription start site region 139827
Tssr139828 16 5013560 to 5013569 9 - TSS region transcription start site region 139828
Glyr1 16 5013909 to 5049863 35954 - protein coding gene glyoxylate reductase 1 homolog (Arabidopsis)
Tssr139829 16 5040544 to 5040548 4 - TSS region transcription start site region 139829
Cpgi7927 16 5049286 to 5051052 1766 CpG island CpG island 7927
Tssr4781 16 5049367 to 5049375 8 + TSS region transcription start site region 4781
Tssr139830 16 5049839 to 5049879 40 - TSS region transcription start site region 139830
Tssr139831 16 5049882 to 5049889 7 - TSS region transcription start site region 139831
Tssr136901 16 5050012 to 5050122 110 + TSS region transcription start site region 136901
Ubn1 16 5050057 to 5086289 36232 + protein coding gene ubinuclein 1
Tssr136902 16 5050199 to 5050210 11 + TSS region transcription start site region 136902
Tssr139832 16 5050781 to 5050795 14 - TSS region transcription start site region 139832
Gm23483 16 5060775 to 5060882 107 - snRNA gene predicted gene, 23483
Tssr136903 16 5080947 to 5080952 5 + TSS region transcription start site region 136903
Ppl 16 5086291 to 5132421 46130 - protein coding gene periplakin
Tssr139833 16 5089782 to 5089794 12 - TSS region transcription start site region 139833
Cpgi7928 16 5131622 to 5133098 1476 CpG island CpG island 7928
Tssr139834 16 5132458 to 5132483 25 - TSS region transcription start site region 139834
Tssr139835 16 5132488 to 5132513 25 - TSS region transcription start site region 139835
Tssr136904 16 5146941 to 5146959 18 + TSS region transcription start site region 136904
Tssr136905 16 5146960 to 5146981 21 + TSS region transcription start site region 136905
Tssr136906 16 5146985 to 5146996 11 + TSS region transcription start site region 136906
Sec14l5 16 5147109 to 5187271 40162 + protein coding gene SEC14-like lipid binding 5
D16Mit207 16 5193429 to 5193564 135 DNA segment DNA Segment, Chr 16, Massachusetts Institute of Technology-207
Nagpa 16 5195289 to 5204012 8723 - protein coding gene N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase
Tssr139836 16 5195597 to 5195622 25 - TSS region transcription start site region 139836
Tssr139837 16 5195935 to 5195949 14 - TSS region transcription start site region 139837
Tssr139838 16 5196491 to 5196493 2 - TSS region transcription start site region 139838
Cpgi7929 16 5203068 to 5204100 1032 CpG island CpG island 7929
Tssr139839 16 5203947 to 5203964 17 - TSS region transcription start site region 139839
Tssr139840 16 5203981 to 5204017 36 - TSS region transcription start site region 139840
AU021092 16 5211823 to 5222299 10476 - protein coding gene expressed sequence AU021092
Mir6364 16 5215789 to 5215874 85 - miRNA gene microRNA 6364
Tssr139841 16 5222257 to 5222299 42 - TSS region transcription start site region 139841
Gm23689 16 5223364 to 5223473 109 + miRNA gene predicted gene, 23689
Tssr139842 16 5227825 to 5227830 5 - TSS region transcription start site region 139842
Gm26095 16 5227920 to 5228029 109 + miRNA gene predicted gene, 26095
Cpgi7930 16 5233504 to 5234151 647 CpG island CpG island 7930
Tssr136907 16 5233615 to 5233653 38 + TSS region transcription start site region 136907
Alg1 16 5233621 to 5244909 11288 + protein coding gene asparagine-linked glycosylation 1 (beta-1,4-mannosyltransferase)